Wall clock time and date at job start Wed Apr 1 2020 04:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.52398 * 2 1 4 4 C 1.53197 * 109.48335 * 239.91185 * 2 1 3 5 5 N 1.46923 * 108.76128 * 185.39931 * 4 2 1 6 6 C 1.36934 * 120.62898 * 233.59175 * 5 4 2 7 7 H 1.08007 * 119.99662 * 151.85406 * 6 5 4 8 8 C 1.38809 * 120.00377 * 331.84816 * 6 5 4 9 9 N 1.31623 * 119.99862 * 343.06921 * 8 6 5 10 10 Si 1.86797 * 120.00232 * 163.06126 * 8 6 5 11 11 H 1.48499 * 109.47110 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46808 * 120.00254 * 10 8 6 13 13 H 1.48495 * 109.47402 * 240.00441 * 10 8 6 14 14 C 1.46928 * 118.73806 * 53.61809 * 5 4 2 15 15 C 1.53192 * 108.77466 * 306.38586 * 14 5 4 16 16 C 1.53037 * 109.31007 * 54.64137 * 15 14 5 17 17 H 1.08997 * 109.46700 * 58.63659 * 16 15 14 18 18 N 1.46507 * 109.45963 * 178.61565 * 16 15 14 19 19 C 1.34777 * 119.99495 * 275.02437 * 18 16 15 20 20 O 1.21478 * 120.00146 * 359.97438 * 19 18 16 21 21 C 1.48458 * 119.99954 * 180.02562 * 19 18 16 22 22 C 1.39528 * 120.55128 * 180.02562 * 21 19 18 23 23 C 1.38765 * 118.26639 * 179.97438 * 22 21 19 24 24 N 1.32202 * 119.14497 * 0.02562 * 23 22 21 25 25 C 1.31890 * 121.03618 * 359.97438 * 24 23 22 26 26 C 1.50699 * 119.04059 * 180.28154 * 25 24 23 27 27 C 1.53000 * 117.49958 * 8.47997 * 26 25 24 28 28 C 1.53001 * 117.49985 * 299.81940 * 26 25 24 29 29 N 1.31584 * 121.91780 * 0.02562 * 25 24 23 30 30 H 1.09005 * 109.47319 * 299.91932 * 1 2 3 31 31 H 1.09000 * 109.47327 * 59.91732 * 1 2 3 32 32 H 1.08997 * 109.47683 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46851 * 180.08489 * 3 2 1 34 34 H 1.09003 * 109.47176 * 300.07909 * 3 2 1 35 35 H 1.09000 * 109.47564 * 60.07944 * 3 2 1 36 36 H 1.08993 * 109.58491 * 65.61744 * 4 2 1 37 37 H 1.09000 * 109.71504 * 305.25316 * 4 2 1 38 38 H 0.97002 * 119.99867 * 179.97438 * 9 8 6 39 39 H 1.09005 * 109.58460 * 186.59883 * 14 5 4 40 40 H 1.08998 * 109.70340 * 66.24859 * 14 5 4 41 41 H 1.08993 * 109.49819 * 294.68313 * 15 14 5 42 42 H 1.09004 * 109.52068 * 174.60394 * 15 14 5 43 43 H 0.96996 * 120.00332 * 95.02424 * 18 16 15 44 44 H 1.08001 * 120.86776 * 0.02562 * 22 21 19 45 45 H 1.07992 * 120.42846 * 179.97438 * 23 22 21 46 46 H 1.09006 * 115.55021 * 154.14798 * 26 25 24 47 47 H 1.08995 * 117.49850 * 359.97438 * 27 26 25 48 48 H 1.09006 * 117.50101 * 145.02107 * 27 26 25 49 49 H 1.09004 * 117.49906 * 214.97938 * 28 26 25 50 50 H 1.08995 * 117.49900 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0410 -0.7240 -1.2496 5 7 3.5043 -0.8291 -1.1698 6 6 4.2930 -0.3792 -2.1948 7 1 5.2956 -0.0324 -1.9925 8 6 3.8040 -0.3690 -3.4939 9 7 2.7408 -1.0810 -3.8024 10 14 4.6546 0.6552 -4.8041 11 1 5.8181 1.3575 -4.2055 12 1 5.1224 -0.2319 -5.8994 13 1 3.7001 1.6536 -5.3491 14 6 4.1052 -1.4264 0.0306 15 6 3.5708 -0.6947 1.2658 16 6 2.0408 -0.7231 1.2483 17 1 1.6968 -1.7573 1.2351 18 7 1.5265 -0.0529 2.4453 19 6 1.3980 -0.7383 3.5986 20 8 1.7081 -1.9119 3.6455 21 6 0.8763 -0.0594 4.8114 22 6 0.7391 -0.7578 6.0115 23 6 0.2472 -0.0764 7.1158 24 7 -0.0726 1.2006 6.9945 25 6 0.0696 1.8310 5.8448 26 6 -0.3029 3.2886 5.7587 27 6 -0.6405 4.0098 7.0652 28 6 -1.7523 3.6670 6.0704 29 7 0.5319 1.2254 4.7719 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1313 1.4409 -0.0015 34 1 1.6773 1.9566 -0.8893 35 1 1.6797 1.9558 0.8907 36 1 1.7632 -0.1583 -2.1389 37 1 1.6053 -1.7219 -1.3004 38 1 2.3988 -1.0736 -4.7102 39 1 5.1895 -1.3242 -0.0141 40 1 3.8398 -2.4821 0.0879 41 1 3.9157 0.3392 1.2537 42 1 3.9336 -1.1888 2.1671 43 1 1.2785 0.8841 2.4077 44 1 1.0094 -1.8012 6.0794 45 1 0.1264 -0.5830 8.0618 46 1 0.2117 3.8606 4.9866 47 1 -0.5936 3.4298 7.9868 48 1 -0.3485 5.0564 7.1524 49 1 -2.1911 4.4881 5.5035 50 1 -2.4365 2.8616 6.3372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941075732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:20 Heat of formation + Delta-G solvation = 60.133356 kcal Electronic energy + Delta-G solvation = -30803.946986 eV Core-core repulsion = 26832.737925 eV Total energy + Delta-G solvation = -3971.209061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.58899 -39.92372 -38.18108 -37.26970 -34.72241 -34.15299 -32.78849 -32.12721 -31.93676 -29.46683 -26.76792 -26.37518 -25.86428 -25.34654 -24.68413 -22.76709 -22.66138 -21.63871 -20.61022 -20.29042 -18.69175 -18.13909 -17.60410 -16.75971 -16.05759 -15.78067 -15.66769 -15.59256 -14.96548 -14.81666 -14.55792 -14.32495 -14.03490 -13.84977 -13.61790 -13.35268 -13.17412 -12.70399 -12.59073 -12.32278 -11.88157 -11.63863 -11.50746 -11.33850 -11.33360 -11.26510 -11.07465 -11.06642 -10.88846 -10.83408 -10.70252 -10.61162 -10.38085 -10.19474 -10.09345 -9.97706 -9.69252 -9.66618 -9.60666 -9.39200 -8.73347 -8.46265 -6.67650 -5.79976 -3.22006 0.24286 0.57569 2.63440 2.97576 3.30853 3.35812 3.37293 3.44753 3.46491 3.64247 3.85118 4.37274 4.47569 4.48767 4.52526 4.64971 4.66486 4.82249 5.14986 5.17855 5.27462 5.31156 5.35661 5.40752 5.49127 5.54235 5.58636 5.72671 5.83753 5.84813 5.94154 5.95488 6.07682 6.11392 6.18952 6.30929 6.39768 6.43837 6.46651 6.51896 6.64813 6.69570 6.81436 6.90102 6.97132 7.04393 7.31137 7.52106 7.63498 7.73078 7.80083 8.19138 8.44055 9.20257 9.83376 10.40427 11.28721 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.002613 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.437538 B =10711.050902 C =11514.981297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.128 4.128 4 C 0.187 3.813 5 N -0.589 5.589 6 C -0.249 4.249 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.148 3.852 15 C -0.143 4.143 16 C 0.160 3.840 17 H 0.084 0.916 18 N -0.692 5.692 19 C 0.563 3.437 20 O -0.527 6.527 21 C 0.143 3.857 22 C -0.180 4.180 23 C 0.153 3.847 24 N -0.507 5.507 25 C 0.348 3.652 26 C -0.104 4.104 27 C -0.153 4.153 28 C -0.154 4.154 29 N -0.490 5.490 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.093 0.907 37 H 0.020 0.980 38 H 0.253 0.747 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.408 0.592 44 H 0.161 0.839 45 H 0.177 0.823 46 H 0.132 0.868 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 7.304 21.319 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 C -0.185 4.185 4 C 0.060 3.940 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.546 5.546 10 Si 0.730 3.270 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.021 3.979 15 C -0.183 4.183 16 C 0.057 3.943 17 H 0.102 0.898 18 N -0.342 5.342 19 C 0.345 3.655 20 O -0.403 6.403 21 C -0.006 4.006 22 C -0.203 4.203 23 C -0.014 4.014 24 N -0.222 5.222 25 C 0.081 3.919 26 C -0.124 4.124 27 C -0.190 4.190 28 C -0.193 4.193 29 N -0.206 5.206 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.112 0.888 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.245 0.755 44 H 0.179 0.821 45 H 0.194 0.806 46 H 0.150 0.850 47 H 0.128 0.872 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.456 7.358 21.027 23.829 hybrid contribution 0.487 -0.083 -0.672 0.834 sum -7.970 7.275 20.355 23.039 Atomic orbital electron populations 1.21775 0.95341 1.01328 1.00857 1.21571 0.94532 0.96905 0.96855 1.21753 1.02588 0.94614 0.99573 1.20826 0.83099 0.96795 0.93278 1.44054 1.01653 1.69206 1.16204 1.19192 0.97931 1.35083 0.85656 0.91662 1.25030 0.98511 0.99016 0.96981 1.70033 1.25672 1.40237 1.18696 0.86265 0.78942 0.79976 0.81861 1.20278 1.21784 1.21594 1.20869 0.96694 0.94265 0.86106 1.22462 0.94478 1.01807 0.99584 1.21155 0.94079 0.96871 0.82188 0.89827 1.46255 1.63173 1.15182 1.09594 1.17796 0.79009 0.86088 0.82607 1.90800 1.50214 1.15113 1.84142 1.21857 0.93937 0.89844 0.94935 1.22989 1.00106 1.03739 0.93446 1.23322 0.90021 0.89379 0.98724 1.68042 1.16969 1.10213 1.26930 1.22093 0.90527 0.95613 0.83620 1.20664 1.00940 0.88216 1.02569 1.23045 1.01585 1.00742 0.93663 1.23006 0.90057 1.03417 1.02784 1.68076 1.11388 1.09458 1.31726 0.93756 0.92460 0.93078 0.91081 0.92833 0.94974 0.88844 0.96181 0.93684 0.92505 0.96186 0.91677 0.92761 0.75522 0.82096 0.80586 0.85014 0.87215 0.88046 0.87734 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.31 37.16 0.31 -1.85 16 2 C -0.10 -1.73 0.56 -154.39 -0.09 -1.81 16 3 C -0.13 -2.19 7.83 37.16 0.29 -1.90 16 4 C 0.19 4.25 3.98 -3.71 -0.01 4.24 16 5 N -0.59 -14.21 2.43 -172.32 -0.42 -14.63 16 6 C -0.25 -6.61 9.58 -15.06 -0.14 -6.76 16 7 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 9 N -0.90 -25.58 11.20 55.49 0.62 -24.96 16 10 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 15 C -0.14 -2.59 5.31 -26.61 -0.14 -2.73 16 16 C 0.16 2.79 1.57 -67.89 -0.11 2.68 16 17 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 18 N -0.69 -10.46 4.28 -54.51 -0.23 -10.70 16 19 C 0.56 8.66 7.79 -12.05 -0.09 8.57 16 20 O -0.53 -9.44 16.09 5.38 0.09 -9.35 16 21 C 0.14 1.86 6.79 -82.64 -0.56 1.30 16 22 C -0.18 -1.88 9.72 -38.91 -0.38 -2.26 16 23 C 0.15 1.32 11.31 -17.20 -0.19 1.13 16 24 N -0.51 -5.22 9.32 -10.74 -0.10 -5.32 16 25 C 0.35 3.89 7.31 -157.29 -1.15 2.74 16 26 C -0.10 -0.91 6.23 -91.77 -0.57 -1.48 16 27 C -0.15 -1.05 10.01 -26.69 -0.27 -1.32 16 28 C -0.15 -1.09 10.24 -26.69 -0.27 -1.37 16 29 N -0.49 -6.17 9.60 -7.32 -0.07 -6.24 16 30 H 0.04 0.63 7.36 -51.93 -0.38 0.25 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.46 6.58 -51.93 -0.34 0.12 16 36 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.17 6.33 -51.93 -0.33 0.84 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.41 5.73 6.05 -40.82 -0.25 5.48 16 44 H 0.16 1.50 7.74 -52.49 -0.41 1.09 16 45 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.11 0.82 7.53 -51.93 -0.39 0.43 16 48 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -30.48 396.60 -10.39 -40.87 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.73 Total: 5.79 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -3.49 Total: 2.26 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.20 Total: -61.84 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.48 -10.39 -40.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941075732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.002 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds