Wall clock time and date at job start Wed Apr 1 2020 04:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.52398 * 2 1 4 4 C 1.53197 * 109.48335 * 239.91185 * 2 1 3 5 5 N 1.46923 * 108.76128 * 185.39931 * 4 2 1 6 6 C 1.36934 * 120.62898 * 233.59175 * 5 4 2 7 7 H 1.08007 * 119.99662 * 151.85406 * 6 5 4 8 8 C 1.38809 * 120.00377 * 331.84816 * 6 5 4 9 9 N 1.31623 * 119.99862 * 343.06921 * 8 6 5 10 10 Si 1.86797 * 120.00232 * 163.06126 * 8 6 5 11 11 H 1.48499 * 109.47110 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46808 * 120.00254 * 10 8 6 13 13 H 1.48495 * 109.47402 * 240.00441 * 10 8 6 14 14 C 1.46928 * 118.73806 * 53.61809 * 5 4 2 15 15 C 1.53192 * 108.77466 * 306.38586 * 14 5 4 16 16 C 1.53037 * 109.31007 * 54.64137 * 15 14 5 17 17 H 1.08997 * 109.46700 * 58.63659 * 16 15 14 18 18 N 1.46507 * 109.45963 * 178.61565 * 16 15 14 19 19 C 1.34777 * 119.99495 * 275.02437 * 18 16 15 20 20 O 1.21478 * 120.00146 * 359.97438 * 19 18 16 21 21 C 1.48458 * 119.99954 * 180.02562 * 19 18 16 22 22 C 1.39528 * 120.55128 * 180.02562 * 21 19 18 23 23 C 1.38765 * 118.26639 * 179.97438 * 22 21 19 24 24 N 1.32202 * 119.14497 * 0.02562 * 23 22 21 25 25 C 1.31890 * 121.03618 * 359.97438 * 24 23 22 26 26 C 1.50699 * 119.04059 * 180.28154 * 25 24 23 27 27 C 1.53000 * 117.49958 * 8.47997 * 26 25 24 28 28 C 1.53001 * 117.49985 * 299.81940 * 26 25 24 29 29 N 1.31584 * 121.91780 * 0.02562 * 25 24 23 30 30 H 1.09005 * 109.47319 * 299.91932 * 1 2 3 31 31 H 1.09000 * 109.47327 * 59.91732 * 1 2 3 32 32 H 1.08997 * 109.47683 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46851 * 180.08489 * 3 2 1 34 34 H 1.09003 * 109.47176 * 300.07909 * 3 2 1 35 35 H 1.09000 * 109.47564 * 60.07944 * 3 2 1 36 36 H 1.08993 * 109.58491 * 65.61744 * 4 2 1 37 37 H 1.09000 * 109.71504 * 305.25316 * 4 2 1 38 38 H 0.97002 * 119.99867 * 179.97438 * 9 8 6 39 39 H 1.09005 * 109.58460 * 186.59883 * 14 5 4 40 40 H 1.08998 * 109.70340 * 66.24859 * 14 5 4 41 41 H 1.08993 * 109.49819 * 294.68313 * 15 14 5 42 42 H 1.09004 * 109.52068 * 174.60394 * 15 14 5 43 43 H 0.96996 * 120.00332 * 95.02424 * 18 16 15 44 44 H 1.08001 * 120.86776 * 0.02562 * 22 21 19 45 45 H 1.07992 * 120.42846 * 179.97438 * 23 22 21 46 46 H 1.09006 * 115.55021 * 154.14798 * 26 25 24 47 47 H 1.08995 * 117.49850 * 359.97438 * 27 26 25 48 48 H 1.09006 * 117.50101 * 145.02107 * 27 26 25 49 49 H 1.09004 * 117.49906 * 214.97938 * 28 26 25 50 50 H 1.08995 * 117.49900 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0410 -0.7240 -1.2496 5 7 3.5043 -0.8291 -1.1698 6 6 4.2930 -0.3792 -2.1948 7 1 5.2956 -0.0324 -1.9925 8 6 3.8040 -0.3690 -3.4939 9 7 2.7408 -1.0810 -3.8024 10 14 4.6546 0.6552 -4.8041 11 1 5.8181 1.3575 -4.2055 12 1 5.1224 -0.2319 -5.8994 13 1 3.7001 1.6536 -5.3491 14 6 4.1052 -1.4264 0.0306 15 6 3.5708 -0.6947 1.2658 16 6 2.0408 -0.7231 1.2483 17 1 1.6968 -1.7573 1.2351 18 7 1.5265 -0.0529 2.4453 19 6 1.3980 -0.7383 3.5986 20 8 1.7081 -1.9119 3.6455 21 6 0.8763 -0.0594 4.8114 22 6 0.7391 -0.7578 6.0115 23 6 0.2472 -0.0764 7.1158 24 7 -0.0726 1.2006 6.9945 25 6 0.0696 1.8310 5.8448 26 6 -0.3029 3.2886 5.7587 27 6 -0.6405 4.0098 7.0652 28 6 -1.7523 3.6670 6.0704 29 7 0.5319 1.2254 4.7719 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1313 1.4409 -0.0015 34 1 1.6773 1.9566 -0.8893 35 1 1.6797 1.9558 0.8907 36 1 1.7632 -0.1583 -2.1389 37 1 1.6053 -1.7219 -1.3004 38 1 2.3988 -1.0736 -4.7102 39 1 5.1895 -1.3242 -0.0141 40 1 3.8398 -2.4821 0.0879 41 1 3.9157 0.3392 1.2537 42 1 3.9336 -1.1888 2.1671 43 1 1.2785 0.8841 2.4077 44 1 1.0094 -1.8012 6.0794 45 1 0.1264 -0.5830 8.0618 46 1 0.2117 3.8606 4.9866 47 1 -0.5936 3.4298 7.9868 48 1 -0.3485 5.0564 7.1524 49 1 -2.1911 4.4881 5.5035 50 1 -2.4365 2.8616 6.3372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941075732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:19 Heat of formation + Delta-G solvation = 43.294833 kcal Electronic energy + Delta-G solvation = -30804.677159 eV Core-core repulsion = 26832.737925 eV Total energy + Delta-G solvation = -3971.939235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.44888 -41.24621 -39.59586 -37.91384 -36.35395 -35.13404 -34.19675 -33.80257 -32.88387 -31.20558 -28.18401 -27.65317 -27.55972 -26.18673 -26.03810 -24.16410 -23.20714 -22.69844 -22.31167 -21.41491 -19.94491 -19.23483 -18.90411 -18.34680 -17.08681 -16.86757 -16.76726 -16.66218 -16.50273 -15.83923 -15.70186 -15.56219 -15.33144 -15.11868 -14.95686 -14.92859 -14.74331 -14.32348 -13.87995 -13.28362 -13.22270 -13.08625 -12.91642 -12.74952 -12.65176 -12.42993 -12.39285 -12.35754 -12.06207 -11.96919 -11.92686 -11.88715 -11.84821 -11.72303 -11.55853 -11.36753 -11.33741 -11.14811 -10.53962 -10.44267 -10.37924 -10.07856 -8.67452 -7.85960 -5.30942 -0.65890 -0.17492 1.46813 1.49549 1.58130 1.59328 1.83807 2.51680 2.52255 2.56861 2.89346 3.16499 3.29359 3.46342 3.63679 3.66077 3.69876 3.91753 3.93336 3.94487 4.07483 4.12585 4.16939 4.31004 4.42075 4.48845 4.53194 4.61016 4.63325 4.77133 4.82394 4.83371 4.92057 4.93547 4.98533 5.01852 5.07043 5.13172 5.21614 5.23085 5.28441 5.30915 5.34512 5.40335 5.44336 5.60684 5.68863 5.71575 5.74630 6.36586 6.41158 6.85849 6.99699 7.16197 7.85484 8.38799 9.20953 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.002613 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.437538 B =10711.050902 C =11514.981297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.120 4.120 4 C 0.197 3.803 5 N -0.603 5.603 6 C -0.255 4.255 7 H 0.066 0.934 8 C -0.047 4.047 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.296 1.296 13 H -0.289 1.289 14 C 0.145 3.855 15 C -0.129 4.129 16 C 0.172 3.828 17 H 0.062 0.938 18 N -0.684 5.684 19 C 0.565 3.435 20 O -0.557 6.557 21 C 0.120 3.880 22 C -0.179 4.179 23 C 0.165 3.835 24 N -0.510 5.510 25 C 0.339 3.661 26 C -0.124 4.124 27 C -0.140 4.140 28 C -0.147 4.147 29 N -0.505 5.505 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.064 0.936 37 H -0.011 1.011 38 H 0.249 0.751 39 H 0.059 0.941 40 H 0.008 0.992 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.415 0.585 44 H 0.170 0.830 45 H 0.220 0.780 46 H 0.135 0.865 47 H 0.104 0.896 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 9.248 23.862 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.177 4.177 4 C 0.070 3.930 5 N -0.325 5.325 6 C -0.385 4.385 7 H 0.084 0.916 8 C -0.242 4.242 9 N -0.580 5.580 10 Si 0.791 3.209 11 H -0.191 1.191 12 H -0.223 1.223 13 H -0.216 1.216 14 C 0.019 3.981 15 C -0.169 4.169 16 C 0.068 3.932 17 H 0.080 0.920 18 N -0.335 5.335 19 C 0.349 3.651 20 O -0.435 6.435 21 C -0.027 4.027 22 C -0.201 4.201 23 C -0.002 4.002 24 N -0.225 5.225 25 C 0.072 3.928 26 C -0.144 4.144 27 C -0.178 4.178 28 C -0.186 4.186 29 N -0.221 5.221 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.007 0.993 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.254 0.746 44 H 0.188 0.812 45 H 0.236 0.764 46 H 0.153 0.847 47 H 0.122 0.878 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.981 9.329 23.599 26.918 hybrid contribution 0.643 -0.750 -1.356 1.678 sum -8.339 8.580 22.242 25.256 Atomic orbital electron populations 1.21718 0.93536 1.01369 1.02055 1.21347 0.95901 0.96955 0.94683 1.21660 1.01362 0.93856 1.00841 1.20589 0.82600 0.95211 0.94575 1.44264 1.02080 1.69587 1.16589 1.19475 0.98197 1.34422 0.86412 0.91598 1.25734 0.99415 1.00214 0.98874 1.70186 1.27227 1.41812 1.18788 0.85276 0.78169 0.78296 0.79120 1.19133 1.22294 1.21581 1.20948 0.96921 0.93885 0.86351 1.22267 0.94897 1.01652 0.98062 1.20779 0.93559 0.95874 0.83008 0.91988 1.46010 1.63220 1.15351 1.08911 1.18133 0.78130 0.85731 0.83124 1.90781 1.51473 1.16458 1.84742 1.21542 0.95908 0.90603 0.94617 1.23190 0.99715 1.04196 0.93046 1.24024 0.87847 0.88739 0.99616 1.68159 1.16941 1.10894 1.26468 1.22565 0.90137 0.96603 0.83502 1.20808 1.02313 0.87218 1.04051 1.23105 1.00713 1.01377 0.92586 1.23069 0.89227 1.03514 1.02747 1.68019 1.12232 1.09246 1.32637 0.91410 0.92305 0.93700 0.92835 0.93469 0.91745 0.91749 0.99251 0.94141 0.92222 0.97369 0.91016 0.92058 0.74607 0.81207 0.76350 0.84724 0.87788 0.86199 0.86102 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 8.31 71.98 0.60 -3.45 16 2 C -0.09 -3.12 0.56 -52.10 -0.03 -3.15 16 3 C -0.12 -3.99 7.83 71.98 0.56 -3.43 16 4 C 0.20 9.31 3.98 86.36 0.34 9.66 16 5 N -0.60 -29.87 2.43 -699.09 -1.70 -31.56 16 6 C -0.25 -13.77 9.58 84.03 0.81 -12.96 16 7 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 8 C -0.05 -2.59 4.92 84.86 0.42 -2.17 16 9 N -0.93 -54.70 11.20 21.65 0.24 -54.46 16 10 Si 0.96 44.45 29.59 68.60 2.03 46.48 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 14 C 0.15 6.24 6.52 86.36 0.56 6.80 16 15 C -0.13 -4.64 5.31 30.67 0.16 -4.48 16 16 C 0.17 5.99 1.57 45.02 0.07 6.06 16 17 H 0.06 2.46 7.58 -2.39 -0.02 2.45 16 18 N -0.68 -20.02 4.28 -444.69 -1.90 -21.93 16 19 C 0.56 16.96 7.79 86.97 0.68 17.64 16 20 O -0.56 -19.85 16.09 -3.65 -0.06 -19.91 16 21 C 0.12 2.98 6.79 41.99 0.29 3.26 16 22 C -0.18 -3.38 9.72 22.71 0.22 -3.16 16 23 C 0.17 2.36 11.31 84.76 0.96 3.32 16 24 N -0.51 -9.19 9.32 -187.89 -1.75 -10.95 16 25 C 0.34 6.91 7.31 138.78 1.01 7.92 16 26 C -0.12 -1.91 6.23 -11.54 -0.07 -1.98 16 27 C -0.14 -1.56 10.01 30.62 0.31 -1.25 16 28 C -0.15 -1.73 10.24 30.62 0.31 -1.42 16 29 N -0.50 -11.89 9.60 -177.07 -1.70 -13.59 16 30 H 0.07 1.81 7.36 -2.38 -0.02 1.79 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.98 5.97 -2.39 -0.01 1.97 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.72 6.58 -2.39 -0.02 1.70 16 36 H 0.06 3.43 6.06 -2.39 -0.01 3.42 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 39 H 0.06 2.49 7.93 -2.38 -0.02 2.47 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.07 2.51 6.33 -2.39 -0.02 2.50 16 42 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.42 10.92 6.05 -92.71 -0.56 10.36 16 44 H 0.17 2.85 7.74 -2.91 -0.02 2.83 16 45 H 0.22 1.09 8.06 -2.91 -0.02 1.07 16 46 H 0.13 1.94 8.14 -2.38 -0.02 1.92 16 47 H 0.10 1.30 7.53 -2.39 -0.02 1.28 16 48 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 50 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -67.75 396.60 2.75 -65.00 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.39 Total: 23.71 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 7.20 Total: 17.21 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -6.81 Total: -132.49 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.06 Total: -19.91 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -67.75 2.75 -65.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941075732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.292 kcal (2) G-P(sol) polarization free energy of solvation -67.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds