Wall clock time and date at job start Wed Apr 1 2020 04:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.52677 * 2 1 4 4 C 1.53194 * 109.50173 * 239.91483 * 2 1 3 5 5 N 1.46927 * 108.77383 * 294.69137 * 4 2 1 6 6 C 1.36940 * 120.62998 * 126.37010 * 5 4 2 7 7 H 1.08001 * 120.00015 * 332.81076 * 6 5 4 8 8 C 1.38813 * 119.99675 * 152.81722 * 6 5 4 9 9 N 1.31624 * 119.99446 * 159.74730 * 8 6 5 10 10 Si 1.86799 * 120.00281 * 339.74018 * 8 6 5 11 11 H 1.48506 * 109.46849 * 94.90466 * 10 8 6 12 12 H 1.48501 * 109.47274 * 214.90410 * 10 8 6 13 13 H 1.48498 * 109.47262 * 334.90552 * 10 8 6 14 14 C 1.46928 * 118.73759 * 306.38099 * 5 4 2 15 15 C 1.53193 * 108.77112 * 53.61535 * 14 5 4 16 16 C 1.53039 * 109.31323 * 305.36024 * 15 14 5 17 17 H 1.08994 * 109.46204 * 301.36019 * 16 15 14 18 18 N 1.46495 * 109.46119 * 181.38436 * 16 15 14 19 19 C 1.34777 * 119.99975 * 85.00136 * 18 16 15 20 20 O 1.21558 * 119.99948 * 0.02562 * 19 18 16 21 21 C 1.47835 * 120.00314 * 180.02562 * 19 18 16 22 22 C 1.39955 * 120.93718 * 180.02562 * 21 19 18 23 23 N 1.32147 * 118.91864 * 180.02562 * 22 21 19 24 24 C 1.31871 * 120.97185 * 359.97438 * 23 22 21 25 25 C 1.50700 * 118.95367 * 180.02562 * 24 23 22 26 26 C 1.52992 * 117.49704 * 239.99615 * 25 24 23 27 27 C 1.52995 * 117.49788 * 171.37333 * 25 24 23 28 28 N 1.31869 * 122.09181 * 0.27142 * 24 23 22 29 29 C 1.32154 * 120.96952 * 359.44625 * 28 24 23 30 30 H 1.08996 * 109.47155 * 299.92446 * 1 2 3 31 31 H 1.09001 * 109.46751 * 59.92305 * 1 2 3 32 32 H 1.08998 * 109.47116 * 179.91812 * 1 2 3 33 33 H 1.09008 * 109.47340 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47131 * 300.07772 * 3 2 1 35 35 H 1.08997 * 109.47462 * 60.07540 * 3 2 1 36 36 H 1.08994 * 109.59308 * 174.89688 * 4 2 1 37 37 H 1.09002 * 109.70155 * 54.54252 * 4 2 1 38 38 H 0.97007 * 119.99374 * 180.02562 * 9 8 6 39 39 H 1.08991 * 109.58692 * 293.82581 * 14 5 4 40 40 H 1.08999 * 109.58709 * 173.39982 * 14 5 4 41 41 H 1.09004 * 109.49528 * 185.41194 * 15 14 5 42 42 H 1.08998 * 109.52600 * 65.32944 * 15 14 5 43 43 H 0.96999 * 120.00776 * 265.00726 * 18 16 15 44 44 H 1.07992 * 120.53916 * 0.03969 * 22 21 19 45 45 H 1.09001 * 115.56083 * 25.68672 * 25 24 23 46 46 H 1.09000 * 117.50156 * 145.01999 * 26 25 24 47 47 H 1.09003 * 117.49832 * 0.02562 * 26 25 24 48 48 H 1.09006 * 117.49864 * 0.02562 * 27 25 24 49 49 H 1.08994 * 117.50022 * 214.97929 * 27 25 24 50 50 H 1.07998 * 120.53825 * 180.27291 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4419 0.0000 4 6 2.0414 -0.7239 -1.2495 5 7 1.6515 -2.1382 -1.1695 6 6 0.9631 -2.7312 -2.1941 7 1 0.3312 -2.1355 -2.8361 8 6 1.0775 -4.0981 -2.4073 9 7 0.1547 -4.7362 -3.0957 10 14 2.5410 -5.0319 -1.7175 11 1 2.1765 -5.6237 -0.4052 12 1 2.9260 -6.1140 -2.6588 13 1 3.6837 -4.1003 -1.5402 14 6 2.0140 -2.9041 0.0309 15 6 1.5029 -2.1558 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 3.1304 -0.7445 1.2352 18 7 1.5810 -0.0144 2.4452 19 6 2.2704 -0.1216 3.5984 20 8 3.2739 -0.8060 3.6452 21 6 1.8061 0.5931 4.8064 22 6 2.5072 0.4960 6.0138 23 7 2.0562 1.1514 7.0690 24 6 0.9647 1.8877 6.9951 25 6 0.4915 2.6163 8.2265 26 6 -0.9035 2.2774 8.7554 27 6 -0.6540 3.6166 8.0589 28 7 0.2716 2.0030 5.8792 29 6 0.6537 1.3864 4.7746 30 1 -0.3633 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0276 -0.0015 33 1 3.1314 1.4409 -0.0005 34 1 1.6774 1.9565 -0.8893 35 1 1.6797 1.9558 0.8906 36 1 3.1275 -0.6464 -1.2980 37 1 1.6029 -0.2739 -2.1402 38 1 0.2345 -5.6914 -3.2444 39 1 3.0978 -3.0044 0.0868 40 1 1.5553 -3.8919 -0.0136 41 1 1.8479 -2.6628 2.1672 42 1 0.4132 -2.1354 1.2547 43 1 0.7804 0.5320 2.4079 44 1 3.4021 -0.1045 6.0819 45 1 1.2635 2.8532 8.9586 46 1 -1.0494 2.2912 9.8355 47 1 -1.4789 1.5271 8.2129 48 1 -1.0656 3.7474 7.0581 49 1 -0.6356 4.5115 8.6808 50 1 0.0831 1.4891 3.8634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941080584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:24 Heat of formation + Delta-G solvation = 65.394358 kcal Electronic energy + Delta-G solvation = -30624.665280 eV Core-core repulsion = 26653.684353 eV Total energy + Delta-G solvation = -3970.980927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.68921 -40.16074 -38.43083 -37.36398 -35.03473 -34.24993 -33.33603 -32.37566 -31.69555 -30.16366 -27.06965 -26.66482 -26.29802 -25.07725 -24.68422 -22.77727 -22.57609 -21.81397 -21.26875 -20.60226 -19.01412 -18.21949 -17.73977 -17.07603 -16.69469 -16.03499 -15.66487 -15.44610 -15.12500 -14.74460 -14.53902 -14.44328 -14.42097 -14.05187 -13.94364 -13.70704 -13.29265 -12.84772 -12.68092 -12.42884 -12.13269 -12.03083 -11.86294 -11.84695 -11.73752 -11.41025 -11.33792 -11.32110 -11.25991 -10.93529 -10.88845 -10.62204 -10.46702 -10.22613 -10.09270 -9.98216 -9.75218 -9.73859 -9.66926 -9.51592 -8.91461 -8.64302 -7.01607 -5.97240 -3.33652 0.03760 0.63558 2.56976 2.95244 3.20995 3.27569 3.32796 3.49177 3.51826 3.53970 3.75805 4.05810 4.35749 4.40978 4.51448 4.53919 4.57209 4.61164 4.85351 4.86086 4.90047 5.14151 5.16081 5.22840 5.33613 5.37507 5.37846 5.62028 5.63187 5.64074 5.74247 5.77279 5.81083 5.85934 5.92717 5.99445 6.11162 6.15810 6.23352 6.32383 6.35961 6.46342 6.54846 6.57321 6.62285 6.63808 6.70209 6.93003 7.37426 7.60423 7.92074 8.04504 8.29647 8.90224 9.69295 10.05957 11.18376 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.002468 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.717587 B =11343.153150 C =11689.988150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.137 4.137 4 C 0.162 3.838 5 N -0.603 5.603 6 C -0.259 4.259 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.881 3.119 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.269 1.269 14 C 0.129 3.871 15 C -0.145 4.145 16 C 0.163 3.837 17 H 0.086 0.914 18 N -0.712 5.712 19 C 0.566 3.434 20 O -0.530 6.530 21 C -0.244 4.244 22 C 0.212 3.788 23 N -0.517 5.517 24 C 0.365 3.635 25 C -0.109 4.109 26 C -0.153 4.153 27 C -0.151 4.151 28 N -0.518 5.518 29 C 0.187 3.813 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.262 0.738 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.395 0.605 44 H 0.183 0.817 45 H 0.132 0.868 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 17.230 19.939 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 C -0.195 4.195 4 C 0.036 3.964 5 N -0.326 5.326 6 C -0.387 4.387 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.711 3.289 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.194 1.194 14 C 0.003 3.997 15 C -0.185 4.185 16 C 0.060 3.940 17 H 0.104 0.896 18 N -0.363 5.363 19 C 0.350 3.650 20 O -0.407 6.407 21 C -0.252 4.252 22 C 0.045 3.955 23 N -0.229 5.229 24 C 0.100 3.900 25 C -0.129 4.129 26 C -0.191 4.191 27 C -0.189 4.189 28 N -0.232 5.232 29 C 0.020 3.980 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.200 0.800 45 H 0.150 0.850 46 H 0.123 0.877 47 H 0.116 0.884 48 H 0.130 0.870 49 H 0.120 0.880 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.294 17.046 20.653 26.780 hybrid contribution 0.747 -0.964 -0.473 1.308 sum 0.454 16.082 20.180 25.808 Atomic orbital electron populations 1.21811 0.93947 1.03422 0.99846 1.21369 0.96853 0.94815 0.96217 1.21810 1.00941 0.95535 1.01228 1.20940 0.96461 0.84836 0.94210 1.44358 1.65721 1.06592 1.15906 1.18883 1.19726 0.92023 1.08037 0.89597 1.25268 0.97776 0.96720 0.97757 1.69833 1.32797 1.08870 1.43571 0.86983 0.85412 0.79426 0.77055 1.21723 1.23207 1.19366 1.21317 0.97277 0.95652 0.85489 1.22477 1.01739 0.94830 0.99462 1.21049 0.99535 0.91409 0.82004 0.89591 1.46201 1.29359 1.50427 1.10286 1.17741 0.83675 0.81036 0.82541 1.90811 1.25184 1.40236 1.84446 1.21891 1.00591 1.04689 0.98005 1.23531 0.96460 0.89912 0.85612 1.68288 1.14397 1.08984 1.31268 1.22400 0.86225 0.89204 0.92175 1.20711 0.93414 1.03799 0.94966 1.23009 0.95313 0.99778 1.01014 1.23056 0.99383 0.93066 1.03412 1.68138 1.32782 1.22806 0.99450 1.23447 0.90935 0.87159 0.96478 0.94759 0.92616 0.90344 0.92808 0.92310 0.93407 0.95697 0.91280 0.92780 0.95362 0.90753 0.92325 0.91076 0.76902 0.79966 0.85027 0.87687 0.88406 0.87025 0.87963 0.81136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.83 37.16 0.29 -1.56 16 2 C -0.09 -1.29 0.56 -154.39 -0.09 -1.37 16 3 C -0.14 -1.59 8.31 37.15 0.31 -1.28 16 4 C 0.16 2.95 5.20 -3.71 -0.02 2.93 16 5 N -0.60 -13.46 2.21 -172.32 -0.38 -13.84 16 6 C -0.26 -6.88 10.04 -15.06 -0.15 -7.03 16 7 H 0.09 2.44 8.05 -52.49 -0.42 2.01 16 8 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 9 N -0.91 -27.30 13.97 55.49 0.78 -26.52 16 10 Si 0.88 22.24 24.35 -169.99 -4.14 18.10 16 11 H -0.29 -7.15 6.70 56.52 0.38 -6.77 16 12 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 13 H -0.27 -6.68 6.46 56.52 0.36 -6.31 16 14 C 0.13 2.75 4.19 -3.71 -0.02 2.74 16 15 C -0.14 -2.54 5.31 -26.61 -0.14 -2.68 16 16 C 0.16 2.44 1.57 -67.89 -0.11 2.34 16 17 H 0.09 1.45 7.57 -51.93 -0.39 1.05 16 18 N -0.71 -8.54 4.25 -54.71 -0.23 -8.77 16 19 C 0.57 7.40 7.75 -12.33 -0.10 7.30 16 20 O -0.53 -8.79 16.11 5.31 0.09 -8.70 16 21 C -0.24 -2.67 5.91 -104.69 -0.62 -3.28 16 22 C 0.21 2.34 10.88 -16.77 -0.18 2.16 16 23 N -0.52 -5.83 10.31 -10.39 -0.11 -5.93 16 24 C 0.37 3.80 7.31 -157.06 -1.15 2.65 16 25 C -0.11 -0.85 6.23 -91.78 -0.57 -1.42 16 26 C -0.15 -0.96 10.23 -26.74 -0.27 -1.24 16 27 C -0.15 -0.94 10.01 -26.74 -0.27 -1.20 16 28 N -0.52 -5.26 9.32 -10.39 -0.10 -5.35 16 29 C 0.19 1.75 10.81 -16.77 -0.18 1.57 16 30 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.34 5.97 -51.93 -0.31 1.03 16 33 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.48 7.36 -51.93 -0.38 0.09 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.03 0.62 6.98 -51.93 -0.36 0.26 16 40 H 0.07 1.76 4.49 -51.93 -0.23 1.52 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.24 6.34 -51.93 -0.33 0.91 16 43 H 0.39 3.73 4.80 -40.82 -0.20 3.53 16 44 H 0.18 1.84 7.74 -52.49 -0.41 1.43 16 45 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.11 0.79 7.53 -51.93 -0.39 0.40 16 49 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.17 1.11 6.54 -52.49 -0.34 0.77 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -32.06 387.63 -9.13 -41.18 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.52 Total: 2.79 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.35 Total: 1.20 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.04 Total: -60.42 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.06 -9.13 -41.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941080584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.578 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds