Wall clock time and date at job start Wed Apr 1 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.52677 * 2 1 4 4 C 1.53194 * 109.50173 * 239.91483 * 2 1 3 5 5 N 1.46927 * 108.77383 * 294.69137 * 4 2 1 6 6 C 1.36940 * 120.62998 * 126.37010 * 5 4 2 7 7 H 1.08001 * 120.00015 * 332.81076 * 6 5 4 8 8 C 1.38813 * 119.99675 * 152.81722 * 6 5 4 9 9 N 1.31624 * 119.99446 * 159.74730 * 8 6 5 10 10 Si 1.86799 * 120.00281 * 339.74018 * 8 6 5 11 11 H 1.48506 * 109.46849 * 94.90466 * 10 8 6 12 12 H 1.48501 * 109.47274 * 214.90410 * 10 8 6 13 13 H 1.48498 * 109.47262 * 334.90552 * 10 8 6 14 14 C 1.46928 * 118.73759 * 306.38099 * 5 4 2 15 15 C 1.53193 * 108.77112 * 53.61535 * 14 5 4 16 16 C 1.53039 * 109.31323 * 305.36024 * 15 14 5 17 17 H 1.08994 * 109.46204 * 301.36019 * 16 15 14 18 18 N 1.46495 * 109.46119 * 181.38436 * 16 15 14 19 19 C 1.34777 * 119.99975 * 85.00136 * 18 16 15 20 20 O 1.21558 * 119.99948 * 0.02562 * 19 18 16 21 21 C 1.47835 * 120.00314 * 180.02562 * 19 18 16 22 22 C 1.39955 * 120.93718 * 180.02562 * 21 19 18 23 23 N 1.32147 * 118.91864 * 180.02562 * 22 21 19 24 24 C 1.31871 * 120.97185 * 359.97438 * 23 22 21 25 25 C 1.50700 * 118.95367 * 180.02562 * 24 23 22 26 26 C 1.52992 * 117.49704 * 239.99615 * 25 24 23 27 27 C 1.52995 * 117.49788 * 171.37333 * 25 24 23 28 28 N 1.31869 * 122.09181 * 0.27142 * 24 23 22 29 29 C 1.32154 * 120.96952 * 359.44625 * 28 24 23 30 30 H 1.08996 * 109.47155 * 299.92446 * 1 2 3 31 31 H 1.09001 * 109.46751 * 59.92305 * 1 2 3 32 32 H 1.08998 * 109.47116 * 179.91812 * 1 2 3 33 33 H 1.09008 * 109.47340 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47131 * 300.07772 * 3 2 1 35 35 H 1.08997 * 109.47462 * 60.07540 * 3 2 1 36 36 H 1.08994 * 109.59308 * 174.89688 * 4 2 1 37 37 H 1.09002 * 109.70155 * 54.54252 * 4 2 1 38 38 H 0.97007 * 119.99374 * 180.02562 * 9 8 6 39 39 H 1.08991 * 109.58692 * 293.82581 * 14 5 4 40 40 H 1.08999 * 109.58709 * 173.39982 * 14 5 4 41 41 H 1.09004 * 109.49528 * 185.41194 * 15 14 5 42 42 H 1.08998 * 109.52600 * 65.32944 * 15 14 5 43 43 H 0.96999 * 120.00776 * 265.00726 * 18 16 15 44 44 H 1.07992 * 120.53916 * 0.03969 * 22 21 19 45 45 H 1.09001 * 115.56083 * 25.68672 * 25 24 23 46 46 H 1.09000 * 117.50156 * 145.01999 * 26 25 24 47 47 H 1.09003 * 117.49832 * 0.02562 * 26 25 24 48 48 H 1.09006 * 117.49864 * 0.02562 * 27 25 24 49 49 H 1.08994 * 117.50022 * 214.97929 * 27 25 24 50 50 H 1.07998 * 120.53825 * 180.27291 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4419 0.0000 4 6 2.0414 -0.7239 -1.2495 5 7 1.6515 -2.1382 -1.1695 6 6 0.9631 -2.7312 -2.1941 7 1 0.3312 -2.1355 -2.8361 8 6 1.0775 -4.0981 -2.4073 9 7 0.1547 -4.7362 -3.0957 10 14 2.5410 -5.0319 -1.7175 11 1 2.1765 -5.6237 -0.4052 12 1 2.9260 -6.1140 -2.6588 13 1 3.6837 -4.1003 -1.5402 14 6 2.0140 -2.9041 0.0309 15 6 1.5029 -2.1558 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 3.1304 -0.7445 1.2352 18 7 1.5810 -0.0144 2.4452 19 6 2.2704 -0.1216 3.5984 20 8 3.2739 -0.8060 3.6452 21 6 1.8061 0.5931 4.8064 22 6 2.5072 0.4960 6.0138 23 7 2.0562 1.1514 7.0690 24 6 0.9647 1.8877 6.9951 25 6 0.4915 2.6163 8.2265 26 6 -0.9035 2.2774 8.7554 27 6 -0.6540 3.6166 8.0589 28 7 0.2716 2.0030 5.8792 29 6 0.6537 1.3864 4.7746 30 1 -0.3633 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0276 -0.0015 33 1 3.1314 1.4409 -0.0005 34 1 1.6774 1.9565 -0.8893 35 1 1.6797 1.9558 0.8906 36 1 3.1275 -0.6464 -1.2980 37 1 1.6029 -0.2739 -2.1402 38 1 0.2345 -5.6914 -3.2444 39 1 3.0978 -3.0044 0.0868 40 1 1.5553 -3.8919 -0.0136 41 1 1.8479 -2.6628 2.1672 42 1 0.4132 -2.1354 1.2547 43 1 0.7804 0.5320 2.4079 44 1 3.4021 -0.1045 6.0819 45 1 1.2635 2.8532 8.9586 46 1 -1.0494 2.2912 9.8355 47 1 -1.4789 1.5271 8.2129 48 1 -1.0656 3.7474 7.0581 49 1 -0.6356 4.5115 8.6808 50 1 0.0831 1.4891 3.8634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941080584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:23 Heat of formation + Delta-G solvation = 45.457060 kcal Electronic energy + Delta-G solvation = -30625.529826 eV Core-core repulsion = 26653.684353 eV Total energy + Delta-G solvation = -3971.845473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.50198 -41.31901 -39.66667 -37.95339 -36.55115 -35.17412 -34.50721 -33.68438 -33.21104 -31.65797 -28.17599 -27.90222 -27.54908 -26.22133 -25.70097 -23.97125 -23.23443 -22.93492 -22.65232 -21.62624 -20.13042 -19.08792 -18.92549 -18.54324 -17.78112 -17.40234 -16.74695 -16.53562 -16.09699 -15.99985 -15.78919 -15.62465 -15.51920 -15.26016 -14.99854 -14.86466 -14.57723 -14.34353 -13.99457 -13.90899 -13.34335 -13.33567 -13.01726 -12.76913 -12.74541 -12.62977 -12.44298 -12.35802 -12.17140 -12.08848 -12.02871 -11.92023 -11.86473 -11.54470 -11.44260 -11.42622 -11.28655 -11.06772 -10.72092 -10.51174 -10.44801 -10.07393 -8.93126 -8.15625 -5.46085 -0.77026 -0.13293 1.28494 1.39977 1.47345 1.63660 1.91418 2.40794 2.48146 2.60165 2.82747 3.05391 3.12886 3.28811 3.33180 3.53702 3.61147 3.78578 3.85353 3.85597 3.92963 3.99699 4.08179 4.22533 4.30280 4.33229 4.46814 4.49297 4.60979 4.71817 4.76122 4.79893 4.86317 4.89927 4.91718 4.92331 5.02372 5.08350 5.10165 5.16091 5.17600 5.21585 5.28346 5.31952 5.38407 5.43884 5.67242 5.69980 5.88035 6.14563 6.38589 6.83275 6.91264 7.04697 7.62832 8.03891 9.03877 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.002468 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.717587 B =11343.153150 C =11689.988150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.131 4.131 4 C 0.155 3.845 5 N -0.613 5.613 6 C -0.233 4.233 7 H 0.062 0.938 8 C -0.033 4.033 9 N -0.955 5.955 10 Si 0.935 3.065 11 H -0.284 1.284 12 H -0.313 1.313 13 H -0.263 1.263 14 C 0.126 3.874 15 C -0.135 4.135 16 C 0.174 3.826 17 H 0.072 0.928 18 N -0.697 5.697 19 C 0.572 3.428 20 O -0.568 6.568 21 C -0.252 4.252 22 C 0.206 3.794 23 N -0.533 5.533 24 C 0.359 3.641 25 C -0.128 4.128 26 C -0.146 4.146 27 C -0.140 4.140 28 N -0.524 5.524 29 C 0.198 3.802 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.029 0.971 37 H 0.066 0.934 38 H 0.260 0.740 39 H 0.025 0.975 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.411 0.589 44 H 0.185 0.815 45 H 0.140 0.860 46 H 0.125 0.875 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.123 0.877 50 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 20.141 22.182 29.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 C -0.189 4.189 4 C 0.030 3.970 5 N -0.336 5.336 6 C -0.363 4.363 7 H 0.080 0.920 8 C -0.228 4.228 9 N -0.601 5.601 10 Si 0.766 3.234 11 H -0.211 1.211 12 H -0.242 1.242 13 H -0.187 1.187 14 C 0.000 4.000 15 C -0.175 4.175 16 C 0.070 3.930 17 H 0.090 0.910 18 N -0.349 5.349 19 C 0.358 3.642 20 O -0.447 6.447 21 C -0.260 4.260 22 C 0.040 3.960 23 N -0.246 5.246 24 C 0.095 3.905 25 C -0.148 4.148 26 C -0.185 4.185 27 C -0.178 4.178 28 N -0.237 5.237 29 C 0.030 3.970 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.250 0.750 44 H 0.201 0.799 45 H 0.157 0.843 46 H 0.143 0.857 47 H 0.105 0.895 48 H 0.121 0.879 49 H 0.141 0.859 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.593 20.020 22.937 30.451 hybrid contribution 0.798 -1.762 -1.119 2.234 sum 0.205 18.259 21.818 28.451 Atomic orbital electron populations 1.21765 0.93319 1.01739 1.01893 1.21204 0.97180 0.96106 0.93613 1.21769 1.00896 0.93209 1.03040 1.21177 0.96800 0.82637 0.96429 1.44438 1.65626 1.08258 1.15302 1.18851 1.18155 0.91622 1.07678 0.92042 1.25794 0.99836 0.97895 0.99241 1.69943 1.34661 1.08971 1.46560 0.86086 0.82859 0.78128 0.76350 1.21132 1.24228 1.18736 1.21265 0.96865 0.95084 0.86810 1.22310 1.01721 0.96244 0.97231 1.20711 0.98600 0.90240 0.83487 0.91021 1.45886 1.29794 1.50092 1.09114 1.17948 0.82931 0.80310 0.82990 1.90801 1.26952 1.41972 1.85023 1.21633 1.01675 1.05792 0.96875 1.23647 0.96636 0.89834 0.85906 1.68350 1.15174 1.09728 1.31364 1.22961 0.85787 0.88635 0.93136 1.20896 0.94367 1.04972 0.94548 1.23082 0.93678 0.99603 1.02095 1.23122 0.97663 0.93645 1.03337 1.68262 1.32757 1.23121 0.99609 1.23921 0.90117 0.85621 0.97322 0.90910 0.92474 0.93827 0.92941 0.91241 0.90903 0.95286 0.91503 0.93145 0.95684 0.93284 0.92351 0.90896 0.74998 0.79857 0.84263 0.85725 0.89478 0.87885 0.85864 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 7.83 71.98 0.56 -2.70 16 2 C -0.08 -2.06 0.56 -52.10 -0.03 -2.09 16 3 C -0.13 -2.53 8.31 71.98 0.60 -1.93 16 4 C 0.15 5.45 5.20 86.36 0.45 5.90 16 5 N -0.61 -27.35 2.21 -699.10 -1.55 -28.89 16 6 C -0.23 -12.68 10.04 84.03 0.84 -11.83 16 7 H 0.06 3.60 8.05 -2.91 -0.02 3.57 16 8 C -0.03 -1.90 5.24 84.86 0.44 -1.46 16 9 N -0.95 -59.35 13.97 21.65 0.30 -59.05 16 10 Si 0.94 47.22 24.35 68.60 1.67 48.89 16 11 H -0.28 -13.90 6.70 99.48 0.67 -13.23 16 12 H -0.31 -16.14 7.11 99.48 0.71 -15.43 16 13 H -0.26 -12.80 6.46 99.48 0.64 -12.16 16 14 C 0.13 5.35 4.19 86.36 0.36 5.71 16 15 C -0.13 -4.59 5.31 30.67 0.16 -4.43 16 16 C 0.17 4.86 1.57 45.02 0.07 4.93 16 17 H 0.07 2.28 7.57 -2.39 -0.02 2.27 16 18 N -0.70 -14.60 4.25 -445.29 -1.89 -16.49 16 19 C 0.57 13.76 7.75 86.78 0.67 14.43 16 20 O -0.57 -18.26 16.11 -3.90 -0.06 -18.32 16 21 C -0.25 -4.96 5.91 -19.91 -0.12 -5.08 16 22 C 0.21 4.34 10.88 85.06 0.93 5.26 16 23 N -0.53 -11.35 10.31 -186.80 -1.93 -13.28 16 24 C 0.36 6.81 7.31 138.70 1.01 7.83 16 25 C -0.13 -1.72 6.23 -11.54 -0.07 -1.79 16 26 C -0.15 -1.50 10.23 30.59 0.31 -1.18 16 27 C -0.14 -1.35 10.01 30.59 0.31 -1.04 16 28 N -0.52 -9.28 9.32 -186.80 -1.74 -11.02 16 29 C 0.20 3.07 10.81 85.06 0.92 3.99 16 30 H 0.07 1.25 6.58 -2.39 -0.02 1.23 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.42 5.97 -2.39 -0.01 1.41 16 33 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.07 7.36 -2.39 -0.02 1.06 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 2.36 7.93 -2.39 -0.02 2.35 16 38 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 39 H 0.03 1.09 6.98 -2.39 -0.02 1.07 16 40 H 0.05 2.34 4.49 -2.39 -0.01 2.33 16 41 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.07 2.46 6.34 -2.39 -0.02 2.45 16 43 H 0.41 5.92 4.80 -92.71 -0.44 5.47 16 44 H 0.18 3.65 7.74 -2.91 -0.02 3.62 16 45 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.10 1.20 7.53 -2.38 -0.02 1.19 16 49 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.20 1.67 6.54 -2.91 -0.02 1.65 16 Total: -1.00 -72.07 387.63 2.65 -69.42 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.42 Total: 14.24 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 7.43 Total: 14.51 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -6.80 Total: -128.73 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.06 Total: -18.32 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.67 Total: 48.89 kcal Total: -72.07 2.65 -69.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941080584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.876 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds