Wall clock time and date at job start Wed Apr 1 2020 04:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.52393 * 2 1 4 4 C 1.53191 * 109.49268 * 239.92001 * 2 1 3 5 5 N 1.46923 * 108.77884 * 294.68063 * 4 2 1 6 6 C 1.36935 * 120.63176 * 126.37027 * 5 4 2 7 7 H 1.07998 * 119.99906 * 329.21650 * 6 5 4 8 8 C 1.38813 * 120.00186 * 149.21053 * 6 5 4 9 9 N 1.31625 * 119.99865 * 348.72267 * 8 6 5 10 10 Si 1.86801 * 120.00140 * 168.71880 * 8 6 5 11 11 H 1.48498 * 109.46779 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46772 * 120.00492 * 10 8 6 13 13 H 1.48498 * 109.47017 * 240.00443 * 10 8 6 14 14 C 1.46924 * 118.73993 * 306.39463 * 5 4 2 15 15 C 1.53196 * 108.77807 * 53.60696 * 14 5 4 16 16 C 1.53043 * 109.49913 * 120.08368 * 2 1 3 17 17 H 1.08998 * 109.44904 * 178.59936 * 16 2 1 18 18 N 1.46506 * 109.45802 * 298.56633 * 16 2 1 19 19 C 1.34779 * 119.99607 * 205.06678 * 18 16 2 20 20 O 1.21548 * 120.00129 * 0.02562 * 19 18 16 21 21 C 1.47828 * 119.99837 * 179.97438 * 19 18 16 22 22 C 1.39972 * 120.93821 * 3.94312 * 21 19 18 23 23 N 1.32137 * 118.92363 * 179.72338 * 22 21 19 24 24 C 1.31882 * 120.96342 * 0.27431 * 23 22 21 25 25 N 1.31853 * 122.09992 * 0.02562 * 24 23 22 26 26 C 1.32164 * 120.96694 * 359.97438 * 25 24 23 27 27 C 1.50696 * 120.53936 * 179.97438 * 26 25 24 28 28 C 1.53000 * 117.49941 * 357.17172 * 27 26 25 29 29 C 1.53000 * 117.50382 * 288.51287 * 27 26 25 30 30 H 1.08997 * 109.46931 * 299.91451 * 1 2 3 31 31 H 1.08992 * 109.47029 * 59.91745 * 1 2 3 32 32 H 1.09001 * 109.46992 * 179.91642 * 1 2 3 33 33 H 1.08995 * 109.46931 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47475 * 300.08644 * 3 2 1 35 35 H 1.09001 * 109.46892 * 60.08343 * 3 2 1 36 36 H 1.09002 * 109.58475 * 174.89691 * 4 2 1 37 37 H 1.08998 * 109.70931 * 54.54107 * 4 2 1 38 38 H 0.96998 * 119.99511 * 179.97438 * 9 8 6 39 39 H 1.08997 * 109.59043 * 293.81888 * 14 5 4 40 40 H 1.09007 * 109.70690 * 173.46454 * 14 5 4 41 41 H 1.08993 * 109.50011 * 185.41230 * 15 14 5 42 42 H 1.09003 * 109.51988 * 65.32869 * 15 14 5 43 43 H 0.96997 * 120.00011 * 25.06944 * 18 16 2 44 44 H 1.07995 * 120.54123 * 359.97438 * 22 21 19 45 45 H 1.08006 * 118.95057 * 179.97438 * 24 23 22 46 46 H 1.09000 * 115.54926 * 142.83811 * 27 26 25 47 47 H 1.08999 * 117.49778 * 359.97438 * 28 27 26 48 48 H 1.09001 * 117.49825 * 145.01423 * 28 27 26 49 49 H 1.08994 * 117.50165 * 214.98028 * 29 27 26 50 50 H 1.09002 * 117.49448 * 359.97191 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0412 -0.7238 -1.2496 5 7 1.6515 -2.1381 -1.1696 6 6 0.9631 -2.7311 -2.1941 7 1 0.2863 -2.1465 -2.7995 8 6 1.1351 -4.0837 -2.4545 9 7 2.1123 -4.7468 -1.8733 10 14 -0.0204 -4.9630 -3.6298 11 1 -1.0265 -4.0010 -4.1469 12 1 0.7584 -5.5218 -4.7640 13 1 -0.7112 -6.0649 -2.9130 14 6 2.0140 -2.9040 0.0306 15 6 1.5031 -2.1559 1.2660 16 6 2.0409 -0.7232 1.2483 17 1 3.1306 -0.7445 1.2350 18 7 1.5811 -0.0145 2.4453 19 6 2.2706 -0.1218 3.5984 20 8 3.2741 -0.8061 3.6451 21 6 1.8071 0.5937 4.8061 22 6 0.6114 1.3214 4.7969 23 7 0.2321 1.9413 5.9005 24 6 0.9643 1.8855 6.9959 25 7 2.0995 1.2168 7.0466 26 6 2.5542 0.5676 5.9890 27 6 3.8532 -0.1931 6.0575 28 6 4.6434 -0.1255 7.3659 29 6 5.1463 0.6217 6.1283 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1313 1.4410 -0.0005 34 1 1.6773 1.9567 -0.8892 35 1 1.6797 1.9557 0.8907 36 1 3.1274 -0.6463 -1.2981 37 1 1.6027 -0.2738 -2.1403 38 1 2.2323 -5.6920 -2.0550 39 1 3.0979 -3.0044 0.0866 40 1 1.5573 -3.8929 -0.0125 41 1 1.8481 -2.6630 2.1670 42 1 0.4133 -2.1356 1.2546 43 1 0.7806 0.5319 2.4080 44 1 0.0067 1.3720 3.9036 45 1 0.6235 2.4048 7.8795 46 1 3.8789 -1.1306 5.5020 47 1 4.2238 0.4696 8.1770 48 1 5.1891 -1.0184 7.6710 49 1 6.0227 0.2202 5.6196 50 1 5.0573 1.7080 6.1248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941194376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:30 Heat of formation + Delta-G solvation = 45.625264 kcal Electronic energy + Delta-G solvation = -31224.779662 eV Core-core repulsion = 27252.941482 eV Total energy + Delta-G solvation = -3971.838179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.49007 -41.13339 -39.47525 -38.20268 -36.34015 -34.84307 -34.31365 -33.42006 -33.07146 -31.44238 -28.12948 -27.44919 -27.35067 -26.35602 -25.90766 -23.92275 -23.24302 -22.44032 -22.40155 -21.73272 -19.90531 -18.93216 -18.86720 -18.37822 -17.90161 -17.01260 -16.63074 -16.60301 -16.15326 -15.90233 -15.63605 -15.54002 -15.26442 -15.06609 -15.04562 -14.76215 -14.49845 -14.30042 -13.83173 -13.15056 -13.10106 -13.04794 -12.85030 -12.79016 -12.74220 -12.52695 -12.49520 -12.36349 -12.28519 -12.24720 -12.07845 -11.92140 -11.63375 -11.53740 -11.36477 -11.32362 -11.12408 -10.65469 -10.59340 -10.54973 -10.40192 -9.97802 -8.61668 -7.84142 -5.34388 -0.66792 -0.14877 1.47047 1.48994 1.58845 1.76790 1.99064 2.51975 2.56754 2.80866 2.95131 3.02974 3.26705 3.32636 3.55161 3.65349 3.70706 3.76840 3.97813 3.99090 4.04921 4.06829 4.11787 4.32056 4.41745 4.46330 4.62764 4.66935 4.72017 4.74257 4.85017 4.86182 4.93436 4.95346 5.04135 5.06244 5.11946 5.15938 5.19990 5.22810 5.29093 5.30502 5.41748 5.45376 5.54295 5.66378 5.67956 5.76324 5.77830 6.42830 6.46400 6.89397 7.14537 7.17237 7.86849 8.40436 9.22057 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.002795 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.215650 B =10017.165511 C =10596.276024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 C -0.131 4.131 4 C 0.156 3.844 5 N -0.602 5.602 6 C -0.251 4.251 7 H 0.072 0.928 8 C -0.053 4.053 9 N -0.939 5.939 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.296 1.296 13 H -0.294 1.294 14 C 0.185 3.815 15 C -0.134 4.134 16 C 0.179 3.821 17 H 0.059 0.941 18 N -0.698 5.698 19 C 0.566 3.434 20 O -0.555 6.555 21 C -0.249 4.249 22 C 0.195 3.805 23 N -0.534 5.534 24 C 0.318 3.682 25 N -0.532 5.532 26 C 0.256 3.744 27 C -0.144 4.144 28 C -0.147 4.147 29 C -0.146 4.146 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.005 0.995 37 H 0.063 0.937 38 H 0.247 0.753 39 H -0.014 1.014 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.409 0.591 44 H 0.199 0.801 45 H 0.237 0.763 46 H 0.129 0.871 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.105 0.895 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 17.075 16.842 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.081 4.081 3 C -0.188 4.188 4 C 0.029 3.971 5 N -0.324 5.324 6 C -0.381 4.381 7 H 0.089 0.911 8 C -0.248 4.248 9 N -0.586 5.586 10 Si 0.795 3.205 11 H -0.186 1.186 12 H -0.223 1.223 13 H -0.221 1.221 14 C 0.059 3.941 15 C -0.174 4.174 16 C 0.074 3.926 17 H 0.077 0.923 18 N -0.350 5.350 19 C 0.352 3.648 20 O -0.435 6.435 21 C -0.257 4.257 22 C 0.028 3.972 23 N -0.247 5.247 24 C 0.032 3.968 25 N -0.246 5.246 26 C 0.110 3.890 27 C -0.162 4.162 28 C -0.184 4.184 29 C -0.184 4.184 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.023 0.977 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.004 0.996 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.248 0.752 44 H 0.216 0.784 45 H 0.253 0.747 46 H 0.147 0.853 47 H 0.128 0.872 48 H 0.128 0.872 49 H 0.123 0.877 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.194 16.938 17.642 24.555 hybrid contribution -0.191 -1.494 -1.638 2.225 sum -2.385 15.444 16.004 22.368 Atomic orbital electron populations 1.21746 0.92995 1.01834 1.01884 1.21203 0.97410 0.95714 0.93742 1.21760 1.00531 0.93620 1.02915 1.21082 0.95583 0.84410 0.95975 1.44193 1.65011 1.06944 1.16265 1.19529 1.16820 0.92946 1.08841 0.91083 1.25904 0.98729 0.99336 1.00816 1.70170 1.32159 1.08544 1.47685 0.85217 0.78593 0.78438 0.78275 1.18624 1.22316 1.22078 1.20438 0.94573 0.94985 0.84141 1.22390 1.01051 0.95991 0.97993 1.20647 0.97906 0.90594 0.83426 0.92302 1.45921 1.29745 1.50205 1.09150 1.17993 0.83146 0.80587 0.83034 1.90735 1.26615 1.41723 1.84391 1.21501 1.00892 1.06638 0.96673 1.23889 0.90365 0.85563 0.97432 1.68565 1.34213 1.21440 1.00524 1.25974 0.84720 0.89400 0.96685 1.68335 1.16277 1.10415 1.29543 1.21103 0.93268 0.87690 0.86969 1.21301 0.88016 1.01918 1.05005 1.23070 1.01260 1.03131 0.90917 1.22922 0.95063 0.98511 1.01896 0.91098 0.92152 0.93555 0.93622 0.91136 0.91017 0.97663 0.91857 0.94332 0.99598 0.92600 0.93700 0.91373 0.75242 0.78437 0.74742 0.85310 0.87176 0.87209 0.87654 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 7.83 71.98 0.56 -2.74 16 2 C -0.08 -2.27 0.56 -52.10 -0.03 -2.30 16 3 C -0.13 -2.90 8.31 71.98 0.60 -2.30 16 4 C 0.16 6.06 5.19 86.36 0.45 6.51 16 5 N -0.60 -29.04 2.42 -699.10 -1.69 -30.73 16 6 C -0.25 -13.27 9.59 84.03 0.81 -12.47 16 7 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 8 C -0.05 -2.92 5.04 84.86 0.43 -2.49 16 9 N -0.94 -55.84 11.04 21.65 0.24 -55.60 16 10 Si 0.97 44.39 29.57 68.60 2.03 46.42 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 12 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 14 C 0.19 9.08 5.26 86.36 0.45 9.53 16 15 C -0.13 -5.14 5.31 30.67 0.16 -4.98 16 16 C 0.18 5.68 1.57 45.02 0.07 5.75 16 17 H 0.06 2.22 7.57 -2.39 -0.02 2.20 16 18 N -0.70 -16.79 4.25 -445.28 -1.89 -18.68 16 19 C 0.57 15.40 7.72 86.78 0.67 16.07 16 20 O -0.56 -19.25 13.17 -3.87 -0.05 -19.30 16 21 C -0.25 -5.60 5.91 -19.91 -0.12 -5.72 16 22 C 0.19 3.31 10.81 85.07 0.92 4.23 16 23 N -0.53 -9.17 10.42 -198.97 -2.07 -11.24 16 24 C 0.32 5.01 12.27 180.84 2.22 7.23 16 25 N -0.53 -10.71 9.45 -187.06 -1.77 -12.48 16 26 C 0.26 5.99 6.53 42.92 0.28 6.27 16 27 C -0.14 -3.45 4.81 -11.54 -0.06 -3.51 16 28 C -0.15 -2.74 10.04 30.62 0.31 -2.43 16 29 C -0.15 -2.96 10.24 30.62 0.31 -2.65 16 30 H 0.07 1.29 6.58 -2.39 -0.02 1.27 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.51 5.97 -2.39 -0.01 1.50 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.25 7.36 -2.39 -0.02 1.23 16 36 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 38 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 39 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.06 3.12 6.08 -2.38 -0.01 3.11 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 2.51 6.34 -2.39 -0.02 2.49 16 43 H 0.41 7.00 4.81 -92.71 -0.45 6.55 16 44 H 0.20 2.02 6.56 -2.91 -0.02 2.00 16 45 H 0.24 1.74 8.06 -2.91 -0.02 1.71 16 46 H 0.13 3.76 6.03 -2.39 -0.01 3.74 16 47 H 0.11 1.96 7.58 -2.39 -0.02 1.95 16 48 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -69.45 388.97 3.35 -66.11 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.52 Total: 21.49 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 8.04 Total: 14.01 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -7.19 Total: -128.74 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -69.45 3.35 -66.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941194376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.731 kcal (2) G-P(sol) polarization free energy of solvation -69.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds