Wall clock time and date at job start Wed Apr 1 2020 04:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.52157 * 2 1 4 4 C 1.52761 * 109.56500 * 240.04430 * 2 1 3 5 5 N 1.46930 * 109.00722 * 185.55178 * 4 2 1 6 6 C 1.36934 * 120.63055 * 233.58789 * 5 4 2 7 7 H 1.08001 * 120.00012 * 149.78155 * 6 5 4 8 8 C 1.38810 * 119.99768 * 329.77474 * 6 5 4 9 9 N 1.31621 * 120.00283 * 333.78322 * 8 6 5 10 10 Si 1.86806 * 119.99926 * 153.77925 * 8 6 5 11 11 H 1.48498 * 109.47082 * 59.99921 * 10 8 6 12 12 H 1.48499 * 109.47230 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47093 * 300.00256 * 10 8 6 14 14 C 1.46928 * 118.73663 * 53.30749 * 5 4 2 15 15 C 1.53192 * 108.77728 * 306.64336 * 14 5 4 16 16 C 1.53038 * 109.31283 * 54.63503 * 15 14 5 17 17 H 1.09006 * 109.45822 * 58.65608 * 16 15 14 18 18 N 1.46499 * 109.46145 * 178.62823 * 16 15 14 19 19 C 1.34783 * 120.00028 * 274.99987 * 18 16 15 20 20 O 1.21558 * 119.99467 * 359.97438 * 19 18 16 21 21 C 1.47826 * 119.99998 * 180.02562 * 19 18 16 22 22 C 1.39966 * 120.93827 * 354.85511 * 21 19 18 23 23 N 1.32142 * 118.92082 * 179.72181 * 22 21 19 24 24 C 1.31879 * 120.96168 * 0.56842 * 23 22 21 25 25 N 1.31853 * 122.10376 * 359.70410 * 24 23 22 26 26 C 1.32166 * 120.96118 * 359.97438 * 25 24 23 27 27 C 1.50706 * 120.53356 * 180.02562 * 26 25 24 28 28 C 1.52994 * 117.49895 * 358.27441 * 27 26 25 29 29 C 1.52996 * 60.00055 * 252.50613 * 28 27 26 30 30 H 1.08991 * 109.47526 * 299.92284 * 1 2 3 31 31 H 1.09004 * 109.46911 * 59.92564 * 1 2 3 32 32 H 1.09001 * 109.47073 * 179.91655 * 1 2 3 33 33 H 1.08998 * 109.46679 * 180.08432 * 3 2 1 34 34 H 1.09003 * 109.46884 * 300.07696 * 3 2 1 35 35 H 1.08998 * 109.47512 * 60.07851 * 3 2 1 36 36 H 1.08998 * 109.51100 * 65.67021 * 4 2 1 37 37 H 1.08998 * 109.43419 * 305.38384 * 4 2 1 38 38 H 0.96993 * 119.99837 * 354.67459 * 9 8 6 39 39 H 1.08994 * 109.58537 * 66.43327 * 14 5 4 40 40 H 1.09001 * 109.58256 * 186.71353 * 14 5 4 41 41 H 1.08993 * 109.49912 * 174.58511 * 15 14 5 42 42 H 1.08998 * 109.49729 * 294.68415 * 15 14 5 43 43 H 0.96992 * 120.00347 * 94.99920 * 18 16 15 44 44 H 1.08002 * 120.54391 * 359.97438 * 22 21 19 45 45 H 1.08005 * 118.94851 * 179.72916 * 24 23 22 46 46 H 1.09003 * 115.54653 * 143.97650 * 27 26 25 47 47 H 1.09001 * 117.50390 * 359.97438 * 28 27 26 48 48 H 1.09003 * 117.50023 * 145.01902 * 28 27 26 49 49 H 1.08996 * 117.50536 * 252.50998 * 29 28 27 50 50 H 1.09004 * 117.49669 * 107.48760 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0416 -0.7187 -1.2471 5 7 3.5047 -0.8291 -1.1695 6 6 4.2937 -0.3784 -2.1940 7 1 5.2856 -0.0046 -1.9873 8 6 3.8185 -0.4022 -3.4980 9 7 2.8981 -1.2759 -3.8473 10 14 4.4854 0.8058 -4.7572 11 1 5.9498 0.6085 -4.9052 12 1 3.8198 0.5759 -6.0646 13 1 4.2164 2.1936 -4.3026 14 6 4.1053 -1.4266 0.0309 15 6 3.5709 -0.6949 1.2661 16 6 2.0408 -0.7229 1.2484 17 1 1.6968 -1.7572 1.2354 18 7 1.5265 -0.0525 2.4451 19 6 1.3971 -0.7378 3.5985 20 8 1.7068 -1.9123 3.6455 21 6 0.8776 -0.0614 4.8059 22 6 0.6149 1.3134 4.8037 23 7 0.1459 1.8761 5.9035 24 6 -0.0637 1.1642 6.9936 25 7 0.1753 -0.1317 7.0410 26 6 0.6396 -0.7765 5.9848 27 6 0.9089 -2.2579 6.0495 28 6 0.6630 -2.9629 7.3849 29 6 2.0936 -2.7242 6.8979 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8894 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1313 1.4411 -0.0015 34 1 1.6773 1.9566 -0.8893 35 1 1.6796 1.9559 0.8906 36 1 1.7647 -0.1497 -2.1346 37 1 1.6022 -1.7150 -1.2974 38 1 2.6076 -1.9527 -3.2162 39 1 3.8376 -2.4817 0.0869 40 1 5.1898 -1.3267 -0.0148 41 1 3.9334 -1.1894 2.1672 42 1 3.9159 0.3390 1.2541 43 1 1.2791 0.8846 2.4075 44 1 0.7888 1.9040 3.9163 45 1 -0.4437 1.6583 7.8756 46 1 0.6919 -2.8153 5.1383 47 1 0.3069 -2.3553 8.2169 48 1 0.2841 -3.9845 7.3525 49 1 2.6560 -3.5886 6.5450 50 1 2.6783 -1.9596 7.4093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941194379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:34 Heat of formation + Delta-G solvation = 41.729766 kcal Electronic energy + Delta-G solvation = -31305.210457 eV Core-core repulsion = 27333.203356 eV Total energy + Delta-G solvation = -3972.007101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.51989 -41.23887 -39.59112 -38.23334 -36.50208 -34.80443 -34.27532 -33.97364 -33.16548 -30.95512 -28.23845 -27.76458 -27.25099 -26.38545 -25.86042 -23.96383 -23.25273 -22.45715 -22.40703 -21.78000 -20.00298 -19.45085 -18.94483 -18.52943 -17.96452 -16.95840 -16.65948 -16.32354 -16.22388 -16.10286 -15.65846 -15.45301 -15.36523 -15.21206 -15.09641 -14.96683 -14.55457 -14.26525 -14.00155 -13.62992 -13.13841 -12.98229 -12.94025 -12.80850 -12.66067 -12.54390 -12.50613 -12.44879 -12.36794 -12.14476 -11.91399 -11.80809 -11.70701 -11.59154 -11.40147 -11.36030 -11.12740 -10.75654 -10.57818 -10.42628 -10.41819 -10.05235 -8.90150 -8.23158 -5.38979 -0.69099 -0.16895 1.60322 1.66360 1.72727 1.85478 1.93203 2.54546 2.66684 2.79042 2.93340 3.00628 3.21970 3.25493 3.47897 3.56277 3.60851 3.72440 3.87281 3.95775 3.98698 4.03570 4.09547 4.24635 4.29752 4.32776 4.47411 4.54735 4.63935 4.71850 4.73604 4.76171 4.81929 4.89495 4.92149 4.96142 5.01928 5.08717 5.12317 5.13909 5.18162 5.20968 5.27687 5.29651 5.36898 5.44275 5.62312 5.74841 5.89500 6.40801 6.40944 6.87486 7.07306 7.08174 7.79261 8.24936 9.01418 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020462 B = 0.002756 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.084816 B =10156.390796 C =10814.895231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 C -0.124 4.124 4 C 0.177 3.823 5 N -0.608 5.608 6 C -0.351 4.351 7 H 0.048 0.952 8 C -0.070 4.070 9 N -0.939 5.939 10 Si 1.109 2.891 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.276 1.276 14 C 0.146 3.854 15 C -0.127 4.127 16 C 0.180 3.820 17 H 0.061 0.939 18 N -0.699 5.699 19 C 0.568 3.432 20 O -0.552 6.552 21 C -0.249 4.249 22 C 0.194 3.806 23 N -0.534 5.534 24 C 0.319 3.681 25 N -0.532 5.532 26 C 0.256 3.744 27 C -0.138 4.138 28 C -0.146 4.146 29 C -0.146 4.146 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.049 0.951 37 H -0.007 1.007 38 H 0.252 0.748 39 H 0.005 0.995 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.409 0.591 44 H 0.198 0.802 45 H 0.236 0.764 46 H 0.128 0.872 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.105 0.895 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 6.178 22.527 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.085 4.085 3 C -0.181 4.181 4 C 0.051 3.949 5 N -0.332 5.332 6 C -0.481 4.481 7 H 0.066 0.934 8 C -0.267 4.267 9 N -0.580 5.580 10 Si 0.934 3.066 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.202 1.202 14 C 0.020 3.980 15 C -0.167 4.167 16 C 0.075 3.925 17 H 0.079 0.921 18 N -0.351 5.351 19 C 0.354 3.646 20 O -0.432 6.432 21 C -0.257 4.257 22 C 0.027 3.973 23 N -0.248 5.248 24 C 0.033 3.967 25 N -0.245 5.245 26 C 0.110 3.890 27 C -0.157 4.157 28 C -0.183 4.183 29 C -0.184 4.184 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.011 0.989 38 H 0.062 0.938 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.247 0.753 44 H 0.214 0.786 45 H 0.252 0.748 46 H 0.146 0.854 47 H 0.128 0.872 48 H 0.130 0.870 49 H 0.124 0.876 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.513 6.354 21.802 23.919 hybrid contribution 0.584 -1.072 0.249 1.246 sum -6.929 5.283 22.050 23.709 Atomic orbital electron populations 1.21762 0.93012 1.01585 1.02593 1.21172 0.96160 0.97034 0.94103 1.21711 1.01367 0.93590 1.01417 1.20688 0.83283 0.95240 0.95685 1.44268 1.01631 1.70118 1.17187 1.20099 1.00776 1.39064 0.88119 0.93407 1.27105 0.99797 1.01229 0.98535 1.70911 1.34952 1.15317 1.36839 0.82930 0.75395 0.74587 0.73651 1.20525 1.22096 1.20157 1.20942 0.96669 0.93735 0.86640 1.22230 0.95341 1.01573 0.97558 1.20595 0.93039 0.95870 0.83011 0.92069 1.45904 1.65335 1.14815 1.09079 1.17960 0.77680 0.86078 0.82862 1.90750 1.50860 1.16799 1.84745 1.21481 1.10061 0.97377 0.96796 1.23886 0.85989 0.90179 0.97267 1.68568 1.14987 1.40569 1.00679 1.25973 0.88134 0.85991 0.96610 1.68340 1.14976 1.11596 1.29632 1.21113 0.85325 0.95596 0.86986 1.21202 1.07368 0.88819 0.98281 1.23074 0.97873 1.01738 0.95665 1.22897 0.91308 1.03044 1.01197 0.90374 0.92370 0.93736 0.93069 0.93497 0.90620 0.93214 0.98905 0.93827 0.97678 0.92935 0.92015 0.90870 0.75264 0.78573 0.74763 0.85444 0.87240 0.87046 0.87634 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.31 71.98 0.60 -2.97 16 2 C -0.08 -2.67 0.56 -52.25 -0.03 -2.70 16 3 C -0.12 -3.63 7.82 71.98 0.56 -3.07 16 4 C 0.18 7.93 3.40 86.22 0.29 8.22 16 5 N -0.61 -29.40 2.26 -699.93 -1.58 -30.97 16 6 C -0.35 -19.01 9.44 84.03 0.79 -18.22 16 7 H 0.05 2.61 7.95 -2.91 -0.02 2.59 16 8 C -0.07 -3.86 4.63 84.86 0.39 -3.47 16 9 N -0.94 -56.38 12.55 21.65 0.27 -56.10 16 10 Si 1.11 49.73 29.99 68.60 2.06 51.79 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 14 C 0.15 6.16 6.52 86.36 0.56 6.72 16 15 C -0.13 -4.27 5.31 30.67 0.16 -4.11 16 16 C 0.18 5.55 1.57 45.02 0.07 5.62 16 17 H 0.06 2.22 7.57 -2.38 -0.02 2.21 16 18 N -0.70 -16.24 4.24 -445.29 -1.89 -18.13 16 19 C 0.57 14.56 7.72 86.78 0.67 15.23 16 20 O -0.55 -17.82 13.24 -3.90 -0.05 -17.87 16 21 C -0.25 -5.34 5.91 -19.91 -0.12 -5.46 16 22 C 0.19 3.20 10.80 85.07 0.92 4.12 16 23 N -0.53 -8.98 10.42 -198.97 -2.07 -11.06 16 24 C 0.32 4.85 12.27 180.84 2.22 7.07 16 25 N -0.53 -10.27 9.45 -187.06 -1.77 -12.03 16 26 C 0.26 5.70 6.53 42.92 0.28 5.98 16 27 C -0.14 -3.11 4.71 -11.54 -0.05 -3.16 16 28 C -0.15 -2.55 10.04 30.59 0.31 -2.24 16 29 C -0.15 -2.86 10.23 30.59 0.31 -2.55 16 30 H 0.08 1.62 7.36 -2.39 -0.02 1.60 16 31 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.75 5.97 -2.39 -0.01 1.74 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.53 6.58 -2.39 -0.02 1.51 16 36 H 0.05 2.53 6.53 -2.39 -0.02 2.51 16 37 H -0.01 -0.34 7.90 -2.39 -0.02 -0.36 16 38 H 0.25 15.59 6.93 -92.71 -0.64 14.94 16 39 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.05 2.22 7.93 -2.39 -0.02 2.21 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 2.37 6.34 -2.39 -0.02 2.36 16 43 H 0.41 6.97 4.82 -92.71 -0.45 6.53 16 44 H 0.20 1.98 6.57 -2.91 -0.02 1.97 16 45 H 0.24 1.64 8.06 -2.91 -0.02 1.61 16 46 H 0.13 3.40 6.22 -2.39 -0.01 3.38 16 47 H 0.11 1.84 7.58 -2.39 -0.02 1.82 16 48 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -69.23 388.71 3.56 -65.67 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.64 Total: 23.67 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 7.94 Total: 5.03 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -7.04 Total: -128.30 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.05 Total: -17.87 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.06 Total: 51.79 kcal Total: -69.23 3.56 -65.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941194379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.403 kcal (2) G-P(sol) polarization free energy of solvation -69.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds