Wall clock time and date at job start Wed Apr 1 2020 04:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38147 * 120.50209 * 2 1 4 4 N 1.31813 * 120.89806 * 180.31202 * 3 2 1 5 5 C 1.31812 * 122.04739 * 359.71377 * 4 3 2 6 6 C 1.38145 * 120.89413 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.49587 * 180.02562 * 6 5 4 8 8 C 1.39814 * 119.00765 * 359.97438 * 6 5 4 9 9 C 1.48151 * 120.92544 * 180.02562 * 8 6 5 10 10 O 1.21512 * 119.99606 * 90.00483 * 9 8 6 11 11 N 1.34772 * 119.99986 * 269.99567 * 9 8 6 12 12 C 1.47075 * 120.88032 * 179.97438 * 11 9 8 13 13 C 1.53241 * 108.52308 * 231.21201 * 12 11 9 14 14 N 1.46898 * 109.33951 * 306.17219 * 13 12 11 15 15 C 1.46898 * 111.00064 * 187.25568 * 14 13 12 16 16 C 1.53495 * 114.20715 * 180.02562 * 15 14 13 17 17 N 1.47066 * 87.98658 * 220.14321 * 16 15 14 18 18 C 1.36937 * 136.06113 * 206.85859 * 17 16 15 19 19 H 1.07995 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00320 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99557 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47441 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47001 * 120.00359 * 22 20 18 25 25 H 1.48499 * 109.47209 * 240.00202 * 22 20 18 26 26 C 1.47067 * 87.88528 * 27.11900 * 17 16 15 27 27 C 1.46895 * 111.27184 * 63.10496 * 14 13 12 28 28 C 1.47083 * 120.88438 * 0.03202 * 11 9 8 29 29 H 1.08998 * 109.47214 * 270.25055 * 1 2 3 30 30 H 1.09002 * 109.46983 * 30.24428 * 1 2 3 31 31 H 1.08997 * 109.47160 * 150.24699 * 1 2 3 32 32 H 1.07998 * 119.55274 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.55063 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47375 * 269.97438 * 7 6 5 35 35 H 1.08999 * 109.47275 * 29.97819 * 7 6 5 36 36 H 1.09010 * 109.47055 * 149.97709 * 7 6 5 37 37 H 1.08999 * 109.62826 * 111.50161 * 12 11 9 38 38 H 1.08995 * 109.79372 * 351.01771 * 12 11 9 39 39 H 1.09002 * 109.49164 * 186.20946 * 13 12 11 40 40 H 1.09002 * 109.49308 * 66.13262 * 13 12 11 41 41 H 1.09006 * 113.28003 * 313.06392 * 15 14 13 42 42 H 1.09005 * 113.46950 * 105.36887 * 16 15 14 43 43 H 1.08994 * 113.52293 * 334.93371 * 16 15 14 44 44 H 0.96999 * 119.99537 * 179.97438 * 21 20 18 45 45 H 1.09007 * 113.46858 * 87.65629 * 26 17 16 46 46 H 1.08993 * 113.47208 * 218.09965 * 26 17 16 47 47 H 1.08998 * 109.49572 * 56.85259 * 27 14 13 48 48 H 1.08992 * 109.49361 * 176.93859 * 27 14 13 49 49 H 1.09005 * 109.62160 * 248.49928 * 28 11 9 50 50 H 1.09000 * 109.62522 * 9.07498 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1903 0.0000 4 7 3.5263 1.1994 -0.0062 5 6 4.2334 0.0870 -0.0070 6 6 3.6135 -1.1475 -0.0019 7 6 4.4308 -2.4137 -0.0023 8 6 2.2166 -1.2048 0.0048 9 6 1.5079 -2.5057 0.0110 10 8 1.2221 -3.0368 1.0659 11 7 1.1800 -3.1001 -1.1533 12 6 0.4769 -4.3918 -1.1698 13 6 1.2412 -5.3504 -2.0891 14 7 1.4194 -4.7234 -3.4056 15 6 1.9945 -5.6731 -4.3675 16 6 2.2130 -5.0923 -5.7714 17 7 1.7443 -6.3745 -6.3183 18 6 1.9443 -7.0872 -7.4704 19 1 2.5948 -6.6984 -8.2398 20 6 1.3117 -8.3099 -7.6488 21 7 0.5193 -8.7839 -6.7109 22 14 1.5851 -9.2823 -9.2201 23 1 2.5130 -8.5372 -10.1083 24 1 2.1736 -10.6046 -8.8878 25 1 0.2865 -9.4786 -9.9131 26 6 0.9610 -6.5514 -5.0862 27 6 2.2397 -3.5086 -3.3106 28 6 1.5169 -2.4748 -2.4413 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8878 -0.5176 31 1 -0.3633 -0.8922 -0.5100 32 1 1.6691 2.1261 0.0004 33 1 5.3120 0.1415 -0.0117 34 1 4.6235 -2.7215 -1.0300 35 1 5.3777 -2.2351 0.5072 36 1 3.8822 -3.2004 0.5158 37 1 -0.5362 -4.2524 -1.5469 38 1 0.4386 -4.8040 -0.1615 39 1 0.6759 -6.2757 -2.2004 40 1 2.2169 -5.5697 -1.6556 41 1 2.8500 -6.2212 -3.9727 42 1 3.2586 -4.8810 -5.9959 43 1 1.5548 -4.2550 -6.0031 44 1 0.0770 -9.6381 -6.8357 45 1 -0.0313 -6.1029 -5.1345 46 1 0.9419 -7.5806 -4.7280 47 1 3.2016 -3.7534 -2.8600 48 1 2.3986 -3.0981 -4.3077 49 1 0.6038 -2.1508 -2.9409 50 1 2.1692 -1.6179 -2.2727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941485618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:06 Heat of formation + Delta-G solvation = 74.691290 kcal Electronic energy + Delta-G solvation = -30807.032312 eV Core-core repulsion = 26836.454530 eV Total energy + Delta-G solvation = -3970.577782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.31179 -39.79264 -38.70413 -36.93575 -34.29636 -34.11258 -33.65722 -31.97016 -31.27399 -28.64137 -27.91442 -27.62199 -26.45177 -25.03219 -24.42010 -23.22279 -22.69724 -21.65478 -21.34873 -19.53091 -19.15423 -17.91886 -17.36815 -16.86589 -16.65479 -15.42530 -15.36389 -15.14466 -15.01710 -14.87950 -14.83152 -14.72671 -14.27518 -13.91357 -13.76543 -13.65178 -13.60268 -13.10409 -12.91580 -12.81908 -12.75795 -12.58583 -12.44031 -12.17946 -11.82619 -11.66996 -11.58314 -11.37625 -11.16907 -11.04186 -10.83998 -10.71197 -10.52154 -10.04984 -9.91441 -9.81523 -9.64043 -9.24394 -9.17541 -8.95874 -8.83779 -8.09738 -6.91737 -5.80606 -3.13264 0.64125 0.68127 2.22667 2.66626 3.32487 3.36446 3.41420 3.44352 3.94461 4.00422 4.06451 4.32008 4.33500 4.45447 4.57916 4.76436 4.79446 4.85420 4.99416 5.00050 5.10520 5.19381 5.21012 5.23837 5.27599 5.28239 5.30422 5.38279 5.48780 5.54646 5.57398 5.62418 5.69971 5.70957 5.77399 5.80844 5.84841 5.86300 5.98898 6.22563 6.26379 6.32378 6.55340 6.59441 6.96627 7.11995 7.18915 7.23172 7.50125 7.56551 7.61439 7.80087 7.94276 9.00264 9.66392 10.60009 11.37025 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.002326 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.565752 B =12032.562703 C =12398.250485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.101 4.101 3 C 0.093 3.907 4 N -0.469 5.469 5 C 0.094 3.906 6 C -0.100 4.100 7 C -0.118 4.118 8 C -0.077 4.077 9 C 0.568 3.432 10 O -0.532 6.532 11 N -0.600 5.600 12 C 0.116 3.884 13 C 0.044 3.956 14 N -0.521 5.521 15 C 0.019 3.981 16 C 0.128 3.872 17 N -0.610 5.610 18 C -0.216 4.216 19 H 0.082 0.918 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.173 3.827 27 C 0.042 3.958 28 C 0.113 3.887 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.034 0.966 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.040 0.960 44 H 0.253 0.747 45 H 0.034 0.966 46 H 0.067 0.933 47 H 0.034 0.966 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 18.127 15.046 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.103 4.103 3 C -0.064 4.064 4 N -0.177 5.177 5 C -0.063 4.063 6 C -0.102 4.102 7 C -0.175 4.175 8 C -0.088 4.088 9 C 0.355 3.645 10 O -0.409 6.409 11 N -0.333 5.333 12 C -0.006 4.006 13 C -0.085 4.085 14 N -0.247 5.247 15 C -0.090 4.090 16 C 0.001 3.999 17 N -0.336 5.336 18 C -0.344 4.344 19 H 0.100 0.900 20 C -0.205 4.205 21 N -0.565 5.565 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.047 3.953 27 C -0.087 4.087 28 C -0.010 4.010 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.109 0.891 49 H 0.100 0.900 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.170 18.469 15.169 24.109 hybrid contribution 0.408 -1.514 -0.640 1.693 sum 3.578 16.955 14.529 22.613 Atomic orbital electron populations 1.20813 0.89606 1.03624 1.03326 1.20973 0.97742 0.92590 0.99033 1.22622 0.89786 0.97178 0.96802 1.67550 1.08231 1.31443 1.10441 1.22627 1.00416 0.86551 0.96739 1.20972 0.92600 0.97744 0.98923 1.20834 0.99629 0.93842 1.03241 1.20086 0.93709 0.93699 1.01349 1.18168 0.78437 0.84109 0.83833 1.90806 1.54624 1.64849 1.30600 1.48195 1.57213 1.22253 1.05615 1.21834 0.95891 0.81940 1.00931 1.22424 0.99428 0.97602 0.89006 1.62140 1.48795 1.05961 1.07777 1.24080 0.99093 0.95084 0.90702 1.22412 0.97077 0.90927 0.89451 1.45382 1.52768 1.17368 1.18097 1.18943 1.23551 0.98941 0.92941 0.90047 1.24812 0.99344 0.97826 0.98494 1.69840 1.33422 1.20183 1.33085 0.86023 0.77379 0.79888 0.82333 1.20429 1.21670 1.21662 1.22029 0.92102 0.97336 0.83803 1.22407 0.94326 0.91737 1.00206 1.21910 1.00796 0.95429 0.82874 0.90195 0.90317 0.91157 0.82210 0.82200 0.90195 0.90341 0.91044 0.90179 0.88749 0.88794 0.94730 0.91607 0.94738 0.94277 0.93648 0.94793 0.91424 0.94774 0.89089 0.90035 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.67 36.00 0.35 -0.53 16 2 C -0.10 -0.93 5.93 -104.06 -0.62 -1.55 16 3 C 0.09 0.81 10.86 -17.59 -0.19 0.62 16 4 N -0.47 -4.67 10.34 -13.31 -0.14 -4.81 16 5 C 0.09 0.83 10.86 -17.59 -0.19 0.64 16 6 C -0.10 -0.95 5.77 -104.07 -0.60 -1.55 16 7 C -0.12 -0.99 9.67 36.01 0.35 -0.64 16 8 C -0.08 -0.82 3.72 -104.65 -0.39 -1.21 16 9 C 0.57 6.99 4.40 -12.19 -0.05 6.93 16 10 O -0.53 -8.29 16.56 5.36 0.09 -8.20 16 11 N -0.60 -6.75 3.01 -173.49 -0.52 -7.27 16 12 C 0.12 1.35 6.59 -3.60 -0.02 1.33 16 13 C 0.04 0.57 5.61 -3.70 -0.02 0.55 16 14 N -0.52 -7.46 4.62 -226.14 -1.05 -8.51 16 15 C 0.02 0.34 3.52 -67.59 -0.24 0.10 16 16 C 0.13 2.54 7.12 -8.51 -0.06 2.47 16 17 N -0.61 -15.49 3.78 -184.78 -0.70 -16.19 16 18 C -0.22 -6.02 10.75 -15.06 -0.16 -6.18 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -27.02 11.51 55.49 0.64 -26.38 16 22 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.17 3.98 7.22 -8.51 -0.06 3.92 16 27 C 0.04 0.50 5.46 -3.72 -0.02 0.48 16 28 C 0.11 1.14 6.50 -3.62 -0.02 1.11 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.42 8.10 -51.93 -0.42 -0.01 16 31 H 0.07 0.61 7.17 -51.93 -0.37 0.23 16 32 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.07 0.73 7.17 -51.92 -0.37 0.36 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.13 7.07 -51.93 -0.37 0.76 16 39 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.04 0.76 7.90 -51.93 -0.41 0.35 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 45 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.73 7.12 -51.93 -0.37 1.36 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 1.06 6.82 -51.93 -0.35 0.70 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.08 0.74 6.28 -51.93 -0.33 0.41 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -33.24 399.23 -10.77 -44.01 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.03 Total: -1.71 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.05 Total: 6.17 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -1.77 Total: -63.16 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.24 -10.77 -44.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941485618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.698 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds