Wall clock time and date at job start Wed Apr 1 2020 04:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38147 * 120.50209 * 2 1 4 4 N 1.31813 * 120.89806 * 180.31202 * 3 2 1 5 5 C 1.31812 * 122.04739 * 359.71377 * 4 3 2 6 6 C 1.38145 * 120.89413 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.49587 * 180.02562 * 6 5 4 8 8 C 1.39814 * 119.00765 * 359.97438 * 6 5 4 9 9 C 1.48151 * 120.92544 * 180.02562 * 8 6 5 10 10 O 1.21512 * 119.99606 * 90.00483 * 9 8 6 11 11 N 1.34772 * 119.99986 * 269.99567 * 9 8 6 12 12 C 1.47075 * 120.88032 * 179.97438 * 11 9 8 13 13 C 1.53241 * 108.52308 * 231.21201 * 12 11 9 14 14 N 1.46898 * 109.33951 * 306.17219 * 13 12 11 15 15 C 1.46898 * 111.00064 * 187.25568 * 14 13 12 16 16 C 1.53495 * 114.20715 * 180.02562 * 15 14 13 17 17 N 1.47066 * 87.98658 * 220.14321 * 16 15 14 18 18 C 1.36937 * 136.06113 * 206.85859 * 17 16 15 19 19 H 1.07995 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00320 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99557 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47441 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47001 * 120.00359 * 22 20 18 25 25 H 1.48499 * 109.47209 * 240.00202 * 22 20 18 26 26 C 1.47067 * 87.88528 * 27.11900 * 17 16 15 27 27 C 1.46895 * 111.27184 * 63.10496 * 14 13 12 28 28 C 1.47083 * 120.88438 * 0.03202 * 11 9 8 29 29 H 1.08998 * 109.47214 * 270.25055 * 1 2 3 30 30 H 1.09002 * 109.46983 * 30.24428 * 1 2 3 31 31 H 1.08997 * 109.47160 * 150.24699 * 1 2 3 32 32 H 1.07998 * 119.55274 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.55063 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47375 * 269.97438 * 7 6 5 35 35 H 1.08999 * 109.47275 * 29.97819 * 7 6 5 36 36 H 1.09010 * 109.47055 * 149.97709 * 7 6 5 37 37 H 1.08999 * 109.62826 * 111.50161 * 12 11 9 38 38 H 1.08995 * 109.79372 * 351.01771 * 12 11 9 39 39 H 1.09002 * 109.49164 * 186.20946 * 13 12 11 40 40 H 1.09002 * 109.49308 * 66.13262 * 13 12 11 41 41 H 1.09006 * 113.28003 * 313.06392 * 15 14 13 42 42 H 1.09005 * 113.46950 * 105.36887 * 16 15 14 43 43 H 1.08994 * 113.52293 * 334.93371 * 16 15 14 44 44 H 0.96999 * 119.99537 * 179.97438 * 21 20 18 45 45 H 1.09007 * 113.46858 * 87.65629 * 26 17 16 46 46 H 1.08993 * 113.47208 * 218.09965 * 26 17 16 47 47 H 1.08998 * 109.49572 * 56.85259 * 27 14 13 48 48 H 1.08992 * 109.49361 * 176.93859 * 27 14 13 49 49 H 1.09005 * 109.62160 * 248.49928 * 28 11 9 50 50 H 1.09000 * 109.62522 * 9.07498 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1903 0.0000 4 7 3.5263 1.1994 -0.0062 5 6 4.2334 0.0870 -0.0070 6 6 3.6135 -1.1475 -0.0019 7 6 4.4308 -2.4137 -0.0023 8 6 2.2166 -1.2048 0.0048 9 6 1.5079 -2.5057 0.0110 10 8 1.2221 -3.0368 1.0659 11 7 1.1800 -3.1001 -1.1533 12 6 0.4769 -4.3918 -1.1698 13 6 1.2412 -5.3504 -2.0891 14 7 1.4194 -4.7234 -3.4056 15 6 1.9945 -5.6731 -4.3675 16 6 2.2130 -5.0923 -5.7714 17 7 1.7443 -6.3745 -6.3183 18 6 1.9443 -7.0872 -7.4704 19 1 2.5948 -6.6984 -8.2398 20 6 1.3117 -8.3099 -7.6488 21 7 0.5193 -8.7839 -6.7109 22 14 1.5851 -9.2823 -9.2201 23 1 2.5130 -8.5372 -10.1083 24 1 2.1736 -10.6046 -8.8878 25 1 0.2865 -9.4786 -9.9131 26 6 0.9610 -6.5514 -5.0862 27 6 2.2397 -3.5086 -3.3106 28 6 1.5169 -2.4748 -2.4413 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8878 -0.5176 31 1 -0.3633 -0.8922 -0.5100 32 1 1.6691 2.1261 0.0004 33 1 5.3120 0.1415 -0.0117 34 1 4.6235 -2.7215 -1.0300 35 1 5.3777 -2.2351 0.5072 36 1 3.8822 -3.2004 0.5158 37 1 -0.5362 -4.2524 -1.5469 38 1 0.4386 -4.8040 -0.1615 39 1 0.6759 -6.2757 -2.2004 40 1 2.2169 -5.5697 -1.6556 41 1 2.8500 -6.2212 -3.9727 42 1 3.2586 -4.8810 -5.9959 43 1 1.5548 -4.2550 -6.0031 44 1 0.0770 -9.6381 -6.8357 45 1 -0.0313 -6.1029 -5.1345 46 1 0.9419 -7.5806 -4.7280 47 1 3.2016 -3.7534 -2.8600 48 1 2.3986 -3.0981 -4.3077 49 1 0.6038 -2.1508 -2.9409 50 1 2.1692 -1.6179 -2.2727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941485618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:05 Heat of formation + Delta-G solvation = 52.850911 kcal Electronic energy + Delta-G solvation = -30807.979382 eV Core-core repulsion = 26836.454530 eV Total energy + Delta-G solvation = -3971.524852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.12573 -40.81382 -40.01463 -38.22507 -35.40004 -34.75837 -34.63496 -33.84098 -32.25491 -29.97950 -28.98279 -28.24766 -27.77283 -26.58475 -25.41551 -24.44739 -24.21837 -22.37438 -22.30197 -20.85351 -20.38173 -18.93749 -18.64431 -18.09435 -17.69863 -16.94472 -16.66687 -16.23061 -16.13920 -16.00113 -15.79238 -15.52902 -15.48865 -15.18748 -14.71783 -14.42228 -14.35397 -14.23706 -14.13698 -13.85192 -13.53867 -13.46771 -13.41179 -13.35460 -13.23716 -13.00483 -12.88035 -12.67403 -12.55422 -12.44878 -12.25212 -12.17290 -11.80978 -11.75907 -11.45527 -11.00735 -10.87837 -10.62201 -10.40901 -9.96576 -9.81248 -9.29618 -8.93468 -7.91769 -5.25749 -0.08932 0.03189 1.28834 1.46122 1.47252 1.57555 1.75597 2.44106 2.65440 2.81398 3.16728 3.30444 3.44328 3.51932 3.63954 3.68108 3.70541 3.83500 3.93025 3.98669 4.16025 4.17978 4.19048 4.30087 4.33906 4.36959 4.43934 4.56760 4.60029 4.65173 4.68354 4.69632 4.73835 4.77930 4.83829 4.86824 4.94503 4.97961 5.02662 5.08302 5.12423 5.15103 5.25972 5.28995 5.36343 5.50920 5.61776 5.90042 6.06917 6.09865 6.22764 6.85758 6.89957 6.90802 7.58789 8.59443 9.26140 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.002326 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.565752 B =12032.562703 C =12398.250485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.104 4.104 3 C 0.093 3.907 4 N -0.486 5.486 5 C 0.093 3.907 6 C -0.105 4.105 7 C -0.115 4.115 8 C -0.097 4.097 9 C 0.573 3.427 10 O -0.571 6.571 11 N -0.597 5.597 12 C 0.123 3.877 13 C 0.049 3.951 14 N -0.524 5.524 15 C 0.055 3.945 16 C 0.134 3.866 17 N -0.644 5.644 18 C -0.227 4.227 19 H 0.088 0.912 20 C -0.069 4.069 21 N -0.953 5.953 22 Si 0.981 3.019 23 H -0.263 1.263 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.173 3.827 27 C 0.043 3.957 28 C 0.121 3.879 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.034 0.966 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.248 0.752 45 H 0.021 0.979 46 H 0.032 0.968 47 H 0.039 0.961 48 H 0.099 0.901 49 H 0.089 0.911 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 20.563 14.726 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.106 4.106 3 C -0.063 4.063 4 N -0.193 5.193 5 C -0.064 4.064 6 C -0.108 4.108 7 C -0.172 4.172 8 C -0.108 4.108 9 C 0.361 3.639 10 O -0.451 6.451 11 N -0.329 5.329 12 C 0.001 3.999 13 C -0.080 4.080 14 N -0.250 5.250 15 C -0.054 4.054 16 C 0.009 3.991 17 N -0.370 5.370 18 C -0.355 4.355 19 H 0.105 0.895 20 C -0.262 4.262 21 N -0.602 5.602 22 Si 0.809 3.191 23 H -0.187 1.187 24 H -0.219 1.219 25 H -0.220 1.220 26 C 0.047 3.953 27 C -0.085 4.085 28 C -0.002 4.002 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.204 0.796 33 H 0.201 0.799 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.038 0.962 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.117 0.883 49 H 0.108 0.892 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.369 20.957 14.842 26.049 hybrid contribution 0.043 -2.186 -0.484 2.240 sum 4.413 18.770 14.358 24.040 Atomic orbital electron populations 1.20840 0.88632 1.04250 1.03439 1.21169 0.98510 0.92287 0.98667 1.23048 0.89587 0.97958 0.95744 1.67616 1.08903 1.31909 1.10916 1.22997 1.01543 0.85948 0.95895 1.21114 0.92247 0.98465 0.98964 1.20825 1.00084 0.92695 1.03565 1.20106 0.94362 0.93178 1.03128 1.18410 0.77726 0.84447 0.83270 1.90781 1.56291 1.66056 1.31971 1.48228 1.56693 1.21927 1.06016 1.21711 0.95973 0.81990 1.00271 1.22385 0.99486 0.97651 0.88476 1.62027 1.49166 1.05974 1.07796 1.23461 0.96635 0.94215 0.91053 1.22507 0.97927 0.89174 0.89505 1.45760 1.53493 1.19714 1.18074 1.19351 1.22983 0.99290 0.93838 0.89465 1.25683 0.99694 0.99105 1.01710 1.70034 1.34776 1.20363 1.35011 0.84970 0.77179 0.78164 0.78777 1.18698 1.21890 1.21973 1.21907 0.92748 0.96307 0.84345 1.22491 0.94308 0.90563 1.01168 1.21931 1.01314 0.95119 0.81807 0.90336 0.87729 0.92429 0.79596 0.79858 0.89553 0.88295 0.93355 0.89588 0.89151 0.89730 0.94737 0.92015 0.93094 0.92988 0.94275 0.96157 0.94987 0.94237 0.88286 0.89247 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.67 71.24 0.69 -0.82 16 2 C -0.10 -1.71 5.93 -19.50 -0.12 -1.83 16 3 C 0.09 1.37 10.86 84.67 0.92 2.29 16 4 N -0.49 -8.45 10.34 -196.01 -2.03 -10.47 16 5 C 0.09 1.43 10.86 84.67 0.92 2.35 16 6 C -0.11 -1.82 5.77 -19.50 -0.11 -1.93 16 7 C -0.11 -1.74 9.67 71.24 0.69 -1.05 16 8 C -0.10 -1.93 3.72 -19.88 -0.07 -2.00 16 9 C 0.57 13.73 4.40 86.88 0.38 14.11 16 10 O -0.57 -17.96 16.56 -3.75 -0.06 -18.02 16 11 N -0.60 -12.76 3.01 -821.09 -2.47 -15.23 16 12 C 0.12 2.80 6.59 86.35 0.57 3.37 16 13 C 0.05 1.25 5.61 86.38 0.48 1.73 16 14 N -0.52 -14.41 4.62 -869.39 -4.02 -18.43 16 15 C 0.06 1.97 3.52 45.39 0.16 2.13 16 16 C 0.13 5.12 7.12 83.18 0.59 5.72 16 17 N -0.64 -32.84 3.78 -738.53 -2.79 -35.63 16 18 C -0.23 -12.64 10.75 84.03 0.90 -11.73 16 19 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 21 N -0.95 -57.74 11.51 21.65 0.25 -57.49 16 22 Si 0.98 45.45 29.55 68.60 2.03 47.48 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 C 0.17 8.16 7.22 83.18 0.60 8.76 16 27 C 0.04 0.91 5.46 86.37 0.47 1.38 16 28 C 0.12 2.16 6.50 86.33 0.56 2.72 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.06 0.91 7.17 -2.39 -0.02 0.89 16 32 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 36 H 0.05 0.97 7.17 -2.38 -0.02 0.95 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.09 2.18 7.07 -2.39 -0.02 2.16 16 39 H 0.08 2.32 8.11 -2.39 -0.02 2.30 16 40 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 2.27 8.13 -2.38 -0.02 2.25 16 42 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.05 1.89 7.90 -2.39 -0.02 1.88 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.03 1.71 7.12 -2.39 -0.02 1.70 16 47 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.10 1.99 6.82 -2.39 -0.02 1.97 16 49 H 0.09 1.52 8.14 -2.38 -0.02 1.51 16 50 H 0.10 1.49 6.28 -2.39 -0.01 1.48 16 Total: -1.00 -73.18 399.23 -0.06 -73.24 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.93 Total: 12.83 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 8.11 Total: 21.73 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -11.06 Total: -137.26 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.06 Total: -18.02 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.18 -0.06 -73.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941485618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.091 kcal (2) G-P(sol) polarization free energy of solvation -73.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds