Wall clock time and date at job start Wed Apr 1 2020 03:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31887 * 118.95095 * 2 1 4 4 C 1.32130 * 120.96663 * 180.02562 * 3 2 1 5 5 C 1.39972 * 118.92565 * 0.02562 * 4 3 2 6 6 C 1.47831 * 120.93828 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99847 * 125.89824 * 6 5 4 8 8 N 1.34773 * 120.00060 * 305.88735 * 6 5 4 9 9 C 1.43510 * 122.54902 * 354.32996 * 8 6 5 10 10 C 1.51722 * 114.25918 * 122.92341 * 9 8 6 11 11 C 1.51150 * 111.89251 * 82.63769 * 10 9 8 12 12 H 1.09003 * 110.22724 * 34.32181 * 11 10 9 13 13 C 1.53395 * 110.93472 * 156.74835 * 11 10 9 14 14 N 1.46595 * 108.10756 * 102.74570 * 13 11 10 15 15 C 1.36941 * 125.31766 * 178.65141 * 14 13 11 16 16 H 1.07997 * 119.99983 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99912 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00472 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99964 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47160 * 59.99343 * 19 17 15 21 21 H 1.48497 * 109.47203 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46556 * 299.99559 * 19 17 15 23 23 C 1.46660 * 109.36722 * 358.65535 * 14 13 11 24 24 C 1.54187 * 106.90019 * 18.24822 * 23 14 13 25 25 H 1.09003 * 111.45147 * 91.57759 * 24 23 14 26 26 C 1.51844 * 109.37131 * 214.10207 * 24 23 14 27 27 C 1.49541 * 122.55176 * 174.30005 * 8 6 5 28 28 C 1.39923 * 118.11921 * 0.27215 * 5 4 3 29 29 C 1.50705 * 120.53964 * 179.72606 * 28 5 4 30 30 N 1.31850 * 118.95579 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47295 * 89.99975 * 1 2 3 32 32 H 1.09007 * 109.46780 * 209.99591 * 1 2 3 33 33 H 1.08998 * 109.46874 * 329.99166 * 1 2 3 34 34 H 1.08002 * 120.53763 * 180.02562 * 4 3 2 35 35 H 1.09002 * 108.52703 * 244.15161 * 9 8 6 36 36 H 1.08999 * 108.53196 * 1.68417 * 9 8 6 37 37 H 1.09003 * 108.99707 * 203.26306 * 10 9 8 38 38 H 1.09004 * 108.99357 * 322.10038 * 10 9 8 39 39 H 1.09007 * 109.74583 * 222.41654 * 13 11 10 40 40 H 1.09002 * 109.74401 * 343.07305 * 13 11 10 41 41 H 0.96994 * 120.00203 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.97294 * 137.64999 * 23 14 13 43 43 H 1.09006 * 109.96237 * 258.86493 * 23 14 13 44 44 H 1.09007 * 109.00863 * 54.38775 * 26 24 23 45 45 H 1.08999 * 109.01202 * 295.52253 * 26 24 23 46 46 H 1.09002 * 110.26747 * 131.26366 * 27 8 6 47 47 H 1.09002 * 110.38662 * 9.23276 * 27 8 6 48 48 H 1.08994 * 109.46964 * 94.89516 * 29 28 5 49 49 H 1.08994 * 109.47339 * 214.89761 * 29 28 5 50 50 H 1.08995 * 109.46704 * 334.89488 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2005 -0.0005 5 6 4.1856 0.0000 -0.0016 6 6 5.6639 0.0001 -0.0016 7 8 6.2717 -0.6179 0.8505 8 7 6.3377 0.6851 -0.9466 9 6 5.6812 1.3341 -2.0455 10 6 5.9621 2.8214 -2.1491 11 6 7.2697 3.1003 -2.8540 12 1 7.4445 2.3569 -3.6319 13 6 7.2779 4.5112 -3.4559 14 7 8.0833 5.3732 -2.5857 15 6 8.3453 6.6988 -2.8076 16 1 7.9453 7.1892 -3.6828 17 6 9.1250 7.4123 -1.9077 18 7 9.6122 6.8149 -0.8409 19 14 9.4819 9.2209 -2.2101 20 1 8.2044 9.9765 -2.2559 21 1 10.3296 9.7487 -1.1110 22 1 10.1949 9.3751 -3.5036 23 6 8.5648 4.5940 -1.4402 24 6 8.4369 3.1063 -1.8246 25 1 9.3533 2.7324 -2.2815 26 6 8.0883 2.2951 -0.5893 27 6 7.8262 0.8275 -0.9296 28 6 3.4662 -1.2001 -0.0080 29 6 4.1858 -2.5243 -0.0156 30 7 2.1453 -1.1537 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5140 34 1 3.9816 2.1495 -0.0001 35 1 6.0012 0.8560 -2.9713 36 1 4.6058 1.1913 -1.9398 37 1 5.1523 3.2978 -2.7018 38 1 6.0039 3.2453 -1.1457 39 1 7.7157 4.4833 -4.4538 40 1 6.2587 4.8936 -3.5118 41 1 10.1567 7.3136 -0.2119 42 1 9.6072 4.8381 -1.2356 43 1 7.9539 4.8061 -0.5627 44 1 7.1956 2.7172 -0.1276 45 1 8.9150 2.3532 0.1187 46 1 8.2397 0.5875 -1.9092 47 1 8.2609 0.1799 -0.1682 48 1 4.2826 -2.8910 1.0062 49 1 3.6185 -3.2427 -0.6073 50 1 5.1767 -2.3967 -0.4514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946824326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:27 Heat of formation + Delta-G solvation = 25.850777 kcal Electronic energy + Delta-G solvation = -31147.636039 eV Core-core repulsion = 27174.940373 eV Total energy + Delta-G solvation = -3972.695666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.61323 -41.28032 -39.85026 -37.41160 -35.63803 -35.08740 -34.55520 -33.47019 -32.43214 -30.30820 -30.02185 -28.93871 -28.68243 -26.17358 -24.96855 -24.37034 -24.17816 -23.11715 -21.93981 -20.87653 -19.73504 -19.16817 -18.96080 -18.55865 -17.43505 -17.06199 -16.93334 -16.49944 -16.37916 -16.01144 -15.41630 -15.28497 -15.11179 -14.69327 -14.55351 -14.42143 -14.29361 -14.15515 -13.86002 -13.70187 -13.46953 -13.35447 -13.27805 -13.18342 -13.05043 -12.85637 -12.74210 -12.66982 -12.50664 -12.39750 -12.12568 -11.85891 -11.77175 -11.67789 -11.41174 -11.11851 -11.04449 -11.00748 -10.68685 -10.47674 -10.44117 -9.75424 -8.84264 -7.78533 -5.19445 -0.59736 -0.15802 1.40413 1.45326 1.48070 1.54478 1.77604 2.47525 2.49964 2.77460 2.90764 3.21356 3.31214 3.32903 3.66514 3.70825 3.77713 3.82337 3.93121 4.01960 4.09373 4.14848 4.26482 4.30364 4.45557 4.54832 4.59779 4.61029 4.67533 4.70646 4.70837 4.72260 4.79966 4.87192 4.89976 4.98549 5.05706 5.06162 5.10857 5.13169 5.19908 5.29753 5.32306 5.42514 5.49647 5.63018 5.74418 5.77138 5.87567 6.31029 6.32554 6.87458 6.89787 7.14306 7.84594 8.45140 9.24789 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.002708 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.052800 B =10338.168988 C =11176.598957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.327 3.673 3 N -0.536 5.536 4 C 0.191 3.809 5 C -0.253 4.253 6 C 0.583 3.417 7 O -0.558 6.558 8 N -0.595 5.595 9 C 0.111 3.889 10 C -0.121 4.121 11 C -0.078 4.078 12 H 0.103 0.897 13 C 0.134 3.866 14 N -0.625 5.625 15 C -0.240 4.240 16 H 0.080 0.920 17 C -0.067 4.067 18 N -0.949 5.949 19 Si 0.976 3.024 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.276 1.276 23 C 0.178 3.822 24 C -0.094 4.094 25 H 0.076 0.924 26 C -0.117 4.117 27 C 0.124 3.876 28 C 0.221 3.779 29 C -0.103 4.103 30 N -0.529 5.529 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.178 0.822 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.245 0.755 42 H 0.047 0.953 43 H -0.021 1.021 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.102 0.898 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.512 -19.576 -2.217 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.061 3.939 3 N -0.251 5.251 4 C 0.025 3.975 5 C -0.261 4.261 6 C 0.370 3.630 7 O -0.437 6.437 8 N -0.326 5.326 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.096 4.096 12 H 0.121 0.879 13 C 0.009 3.991 14 N -0.351 5.351 15 C -0.369 4.369 16 H 0.098 0.902 17 C -0.260 4.260 18 N -0.599 5.599 19 Si 0.805 3.195 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.202 1.202 23 C 0.053 3.947 24 C -0.113 4.113 25 H 0.095 0.905 26 C -0.155 4.155 27 C 0.003 3.997 28 C 0.074 3.926 29 C -0.160 4.160 30 N -0.245 5.245 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.195 0.805 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.066 0.934 43 H -0.003 1.003 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.124 0.876 47 H 0.108 0.892 48 H 0.114 0.886 49 H 0.121 0.879 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.127 -19.753 -1.679 24.937 hybrid contribution 1.507 1.835 0.288 2.392 sum -13.621 -17.918 -1.391 22.550 Atomic orbital electron populations 1.20783 0.82763 1.05368 1.05444 1.24235 1.00017 0.82883 0.86716 1.68423 1.09532 1.30567 1.16566 1.23624 0.89619 0.97866 0.86421 1.21484 0.95435 0.97037 1.12149 1.17761 0.85975 0.78541 0.80741 1.90784 1.69821 1.44602 1.38471 1.47975 1.08539 1.50619 1.25484 1.20858 0.97795 0.92730 0.89909 1.21423 0.97471 0.95558 1.01478 1.21734 0.94595 0.95908 0.97401 0.87907 1.21379 0.93828 0.90491 0.93375 1.44514 1.58875 1.06876 1.24794 1.19413 1.25722 0.85731 1.06077 0.90227 1.25616 1.00781 1.02473 0.97104 1.70146 1.39867 1.35820 1.14032 0.85181 0.77632 0.79826 0.76884 1.20522 1.22162 1.20176 1.21179 0.98259 0.87585 0.87685 1.22242 0.98286 0.95193 0.95616 0.90522 1.21745 1.01677 0.94774 0.97331 1.22304 0.77812 0.95383 1.04164 1.22183 0.89267 0.95768 0.85390 1.20869 0.99416 0.90807 1.04879 1.68296 1.08864 1.30411 1.16922 0.87581 0.88232 0.88595 0.80459 0.89063 0.90434 0.89721 0.92711 0.95863 0.95876 0.94558 0.93434 1.00260 0.92224 0.92017 0.87594 0.89184 0.88594 0.87901 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 10.31 71.24 0.73 -0.28 16 2 C 0.33 6.56 7.64 138.71 1.06 7.62 16 3 N -0.54 -12.09 10.31 -186.79 -1.93 -14.01 16 4 C 0.19 4.27 9.05 85.07 0.77 5.04 16 5 C -0.25 -5.78 4.75 -19.91 -0.09 -5.88 16 6 C 0.58 14.54 6.23 86.78 0.54 15.08 16 7 O -0.56 -17.12 15.79 -3.88 -0.06 -17.18 16 8 N -0.60 -13.01 2.61 -827.22 -2.16 -15.18 16 9 C 0.11 2.07 5.22 86.51 0.45 2.52 16 10 C -0.12 -2.91 4.77 29.57 0.14 -2.77 16 11 C -0.08 -2.20 2.78 -10.36 -0.03 -2.23 16 12 H 0.10 2.28 7.68 -2.39 -0.02 2.26 16 13 C 0.13 5.14 6.82 86.49 0.59 5.73 16 14 N -0.62 -31.49 3.38 -698.25 -2.36 -33.85 16 15 C -0.24 -13.43 10.25 84.03 0.86 -12.57 16 16 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 17 C -0.07 -3.82 5.48 84.86 0.47 -3.36 16 18 N -0.95 -57.07 10.16 21.65 0.22 -56.85 16 19 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 C 0.18 8.55 5.13 86.75 0.45 8.99 16 24 C -0.09 -3.12 2.93 -9.86 -0.03 -3.15 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 26 C -0.12 -3.36 4.50 30.19 0.14 -3.22 16 27 C 0.12 2.75 6.18 85.76 0.53 3.28 16 28 C 0.22 4.73 6.86 42.92 0.29 5.02 16 29 C -0.10 -1.73 9.56 71.24 0.68 -1.04 16 30 N -0.53 -11.23 10.26 -175.02 -1.79 -13.02 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.18 3.70 7.87 -2.91 -0.02 3.68 16 35 H 0.09 1.36 7.68 -2.39 -0.02 1.34 16 36 H 0.08 1.36 5.09 -2.39 -0.01 1.35 16 37 H 0.08 1.90 7.53 -2.39 -0.02 1.89 16 38 H 0.05 1.60 5.86 -2.38 -0.01 1.59 16 39 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.02 0.88 7.40 -2.39 -0.02 0.86 16 41 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.05 2.67 6.19 -2.39 -0.01 2.65 16 43 H -0.02 -1.10 7.72 -2.38 -0.02 -1.12 16 44 H 0.06 1.90 5.47 -2.38 -0.01 1.88 16 45 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.11 1.89 7.81 -2.39 -0.02 1.87 16 47 H 0.09 2.09 7.31 -2.39 -0.02 2.07 16 48 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.08 1.39 6.71 -2.39 -0.02 1.37 16 Total: -1.00 -72.40 383.46 2.45 -69.95 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.95 Total: 13.45 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 7.55 Total: 18.79 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -8.02 Total: -132.91 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.06 Total: -17.18 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -72.40 2.45 -69.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946824326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.805 kcal (2) G-P(sol) polarization free energy of solvation -72.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds