Wall clock time and date at job start Wed Apr 1 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32167 * 120.53442 * 2 1 4 4 C 1.31850 * 120.96529 * 179.97438 * 3 2 1 5 5 N 1.31880 * 122.10017 * 359.97438 * 4 3 2 6 6 C 1.32131 * 120.96597 * 359.73984 * 5 4 3 7 7 C 1.39928 * 120.54202 * 179.97438 * 2 1 3 8 8 C 1.47833 * 120.93811 * 0.02638 * 7 2 1 9 9 O 1.21553 * 119.99735 * 311.72872 * 8 7 2 10 10 N 1.34773 * 120.00334 * 131.73039 * 8 7 2 11 11 C 1.46923 * 120.63958 * 174.66179 * 10 8 7 12 12 C 1.53189 * 108.89363 * 126.42568 * 11 10 8 13 13 C 1.53023 * 109.34074 * 54.54863 * 12 11 10 14 14 C 1.53044 * 109.43881 * 178.76771 * 13 12 11 15 15 C 1.53187 * 109.32670 * 301.31162 * 14 13 12 16 16 N 1.46929 * 108.77134 * 305.35306 * 15 14 13 17 17 C 1.36933 * 120.64210 * 233.61803 * 16 15 14 18 18 H 1.07994 * 120.00202 * 30.15392 * 17 16 15 19 19 C 1.38818 * 120.00250 * 210.15857 * 17 16 15 20 20 N 1.31620 * 119.99928 * 10.68829 * 19 17 16 21 21 Si 1.86795 * 120.00205 * 190.69402 * 19 17 16 22 22 H 1.48500 * 109.47251 * 59.99554 * 21 19 17 23 23 H 1.48502 * 109.47376 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47143 * 299.99763 * 21 19 17 25 25 C 1.46926 * 118.71662 * 53.64524 * 16 15 14 26 26 C 1.53033 * 109.46110 * 58.70115 * 13 12 11 27 27 C 1.53052 * 109.54839 * 298.70041 * 13 12 11 28 28 C 1.46959 * 120.66229 * 354.46757 * 10 8 7 29 29 H 1.09004 * 109.47269 * 273.75911 * 1 2 3 30 30 H 1.08994 * 109.47895 * 33.76988 * 1 2 3 31 31 H 1.09007 * 109.46738 * 153.77222 * 1 2 3 32 32 H 1.08000 * 118.94833 * 179.97438 * 4 3 2 33 33 H 1.08005 * 120.54144 * 180.26734 * 6 5 4 34 34 H 1.09002 * 109.58493 * 6.56601 * 11 10 8 35 35 H 1.09000 * 109.58745 * 246.28093 * 11 10 8 36 36 H 1.09004 * 109.49251 * 174.50535 * 12 11 10 37 37 H 1.09000 * 109.49279 * 294.58470 * 12 11 10 38 38 H 1.09001 * 109.49946 * 61.26696 * 14 13 12 39 39 H 1.09003 * 109.50023 * 181.35640 * 14 13 12 40 40 H 1.09001 * 109.59022 * 185.56927 * 15 14 13 41 41 H 1.09000 * 109.70749 * 65.21495 * 15 14 13 42 42 H 0.96991 * 120.00380 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.58223 * 186.58076 * 25 16 15 44 44 H 1.08997 * 109.70245 * 66.22736 * 25 16 15 45 45 H 1.08992 * 109.49651 * 178.65240 * 26 13 12 46 46 H 1.08997 * 109.49080 * 298.74099 * 26 13 12 47 47 H 1.08992 * 109.49270 * 181.26904 * 27 13 12 48 48 H 1.08998 * 109.49344 * 301.35336 * 27 13 12 49 49 H 1.08995 * 109.47149 * 113.79843 * 28 10 8 50 50 H 1.09004 * 109.71086 * 353.51343 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4969 1.1483 0.0005 5 7 4.2061 0.0364 0.0015 6 6 3.6165 -1.1460 0.0072 7 6 2.2180 -1.2051 0.0005 8 6 1.5122 -2.5041 0.0005 9 8 0.6061 -2.7033 0.7859 10 7 1.8734 -3.4673 -0.8701 11 6 1.2624 -4.8020 -0.8060 12 6 0.6985 -5.1562 -2.1856 13 6 1.8040 -5.0211 -3.2349 14 6 1.2510 -5.4040 -4.6096 15 6 0.7251 -6.8420 -4.5618 16 7 1.7972 -7.7217 -4.0766 17 6 2.1716 -8.8266 -4.7937 18 1 2.0810 -8.8281 -5.8698 19 6 2.6675 -9.9448 -4.1374 20 7 2.5839 -10.0295 -2.8266 21 14 3.4536 -11.3292 -5.1144 22 1 4.6237 -10.8043 -5.8631 23 1 3.8998 -12.3990 -4.1861 24 1 2.4627 -11.8847 -6.0709 25 6 2.4595 -7.3933 -2.8069 26 6 2.9660 -5.9491 -2.8738 27 6 2.3007 -3.5738 -3.2721 28 6 2.8827 -3.2023 -1.9048 29 1 -0.3634 0.0674 1.0255 30 1 -0.3635 0.8542 -0.5712 31 1 -0.3633 -0.9219 -0.4542 32 1 4.0125 2.0973 0.0001 33 1 4.2040 -2.0523 0.0124 34 1 0.4571 -4.8003 -0.0715 35 1 2.0162 -5.5356 -0.5201 36 1 0.3300 -6.1820 -2.1755 37 1 -0.1193 -4.4779 -2.4293 38 1 0.4384 -4.7282 -4.8761 39 1 2.0440 -5.3313 -5.3540 40 1 0.4212 -7.1534 -5.5612 41 1 -0.1283 -6.8990 -3.8862 42 1 2.9300 -10.8109 -2.3680 43 1 3.3004 -8.0684 -2.6481 44 1 1.7500 -7.4940 -1.9856 45 1 3.7435 -5.8712 -3.6336 46 1 3.3735 -5.6614 -1.9047 47 1 3.0722 -3.4736 -4.0354 48 1 1.4687 -2.9096 -3.5060 49 1 3.7700 -3.8044 -1.7095 50 1 3.1493 -2.1453 -1.8962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957507688.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:25 Heat of formation + Delta-G solvation = 36.319797 kcal Electronic energy + Delta-G solvation = -31547.896453 eV Core-core repulsion = 27575.654759 eV Total energy + Delta-G solvation = -3972.241695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.73734 -40.33299 -38.72083 -36.09454 -34.77457 -33.77595 -33.02822 -31.36694 -30.96718 -29.92616 -29.08787 -28.03433 -25.81180 -24.92949 -23.63694 -23.32623 -22.91154 -22.01810 -20.94161 -19.71777 -18.31847 -17.94722 -17.34724 -17.18293 -16.48615 -16.18012 -15.54097 -15.06010 -14.81884 -14.41752 -14.26024 -14.22602 -14.06396 -13.77373 -13.70063 -13.43126 -13.31402 -13.28405 -12.98719 -12.73906 -12.53843 -12.30657 -11.93223 -11.59488 -11.51182 -11.49036 -11.19358 -11.01810 -10.92709 -10.74338 -10.57736 -10.44250 -10.19643 -10.10992 -10.06456 -9.84009 -9.69352 -9.66346 -9.58601 -9.39462 -8.63702 -8.45731 -6.62249 -5.79320 -3.25898 0.19800 0.62354 2.40862 2.77815 3.33866 3.36189 3.41925 3.42551 3.61948 3.72226 3.97609 4.14056 4.47270 4.55703 4.69481 4.86231 4.92281 5.00821 5.08565 5.19745 5.28257 5.30294 5.33507 5.40957 5.43389 5.45902 5.61012 5.65099 5.76542 5.82860 5.85369 5.94573 5.97375 6.02911 6.08238 6.15623 6.27984 6.33460 6.48715 6.50661 6.52192 6.61196 6.71947 6.79536 6.88601 6.97363 7.21750 7.38299 7.62263 7.69946 7.77577 7.90397 8.46576 9.21962 9.83788 10.41096 11.28199 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.002616 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.256384 B =10701.874477 C =10873.042859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.224 3.776 3 N -0.523 5.523 4 C 0.311 3.689 5 N -0.525 5.525 6 C 0.185 3.815 7 C -0.233 4.233 8 C 0.568 3.432 9 O -0.529 6.529 10 N -0.595 5.595 11 C 0.111 3.889 12 C -0.123 4.123 13 C -0.047 4.047 14 C -0.121 4.121 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.251 4.251 18 H 0.063 0.937 19 C 0.003 3.997 20 N -0.906 5.906 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.171 3.829 26 C -0.134 4.134 27 C -0.123 4.123 28 C 0.102 3.898 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.201 0.799 33 H 0.174 0.826 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.019 0.981 42 H 0.254 0.746 43 H 0.088 0.912 44 H 0.019 0.981 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.080 0.920 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 20.050 4.233 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.078 3.922 3 N -0.237 5.237 4 C 0.024 3.976 5 N -0.238 5.238 6 C 0.018 3.982 7 C -0.241 4.241 8 C 0.354 3.646 9 O -0.407 6.407 10 N -0.327 5.327 11 C -0.010 4.010 12 C -0.161 4.161 13 C -0.047 4.047 14 C -0.160 4.160 15 C 0.018 3.982 16 N -0.314 5.314 17 C -0.380 4.380 18 H 0.080 0.920 19 C -0.195 4.195 20 N -0.551 5.551 21 Si 0.734 3.266 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.045 3.955 26 C -0.173 4.173 27 C -0.161 4.161 28 C -0.021 4.021 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.218 0.782 33 H 0.191 0.809 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.079 0.921 49 H 0.098 0.902 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.197 20.642 4.746 21.182 hybrid contribution 0.244 -1.480 -0.554 1.599 sum 0.441 19.163 4.192 19.621 Atomic orbital electron populations 1.20872 0.86941 1.04191 1.04530 1.21866 0.97894 0.86574 0.85871 1.68370 1.10346 1.29568 1.15439 1.25193 0.86704 0.97302 0.88362 1.68483 1.41345 0.98890 1.15132 1.23542 0.90616 0.96812 0.87204 1.21659 0.96631 0.96301 1.09500 1.17786 0.82866 0.82765 0.81177 1.90799 1.29518 1.80465 1.39885 1.48086 1.41063 1.12463 1.31103 1.21802 0.98816 0.81409 0.98960 1.22018 0.97668 1.03129 0.93257 1.20397 0.95864 0.92916 0.95558 1.22035 0.99663 0.98802 0.95520 1.20925 0.90823 0.88868 0.97587 1.43988 1.37147 1.26655 1.23611 1.19136 1.38086 0.90883 0.89944 0.91973 1.25110 1.01631 0.97076 0.95710 1.69944 1.49091 1.29326 1.06698 0.86355 0.79400 0.81812 0.79064 1.21079 1.21626 1.20932 1.20817 0.97385 0.90216 0.87042 1.22353 0.96490 0.99072 0.99422 1.22004 1.00856 0.97755 0.95484 1.21980 0.91292 1.00797 0.88035 0.88713 0.89763 0.89688 0.78239 0.80866 0.89172 0.90266 0.88963 0.92461 0.93422 0.92363 0.93154 0.96319 0.93590 0.89346 0.96294 0.92735 0.93284 0.90754 0.92118 0.90235 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.42 36.00 0.34 -0.68 16 2 C 0.22 2.44 6.86 -81.82 -0.56 1.88 16 3 N -0.52 -5.45 10.36 -10.48 -0.11 -5.56 16 4 C 0.31 2.80 12.27 -92.03 -1.13 1.67 16 5 N -0.52 -5.23 10.42 -14.24 -0.15 -5.38 16 6 C 0.18 1.82 8.87 -16.77 -0.15 1.68 16 7 C -0.23 -2.60 4.84 -104.69 -0.51 -3.10 16 8 C 0.57 7.29 6.41 -12.34 -0.08 7.21 16 9 O -0.53 -8.24 15.10 5.32 0.08 -8.16 16 10 N -0.59 -7.21 2.98 -173.87 -0.52 -7.72 16 11 C 0.11 1.51 5.97 -3.71 -0.02 1.49 16 12 C -0.12 -1.77 4.15 -26.62 -0.11 -1.88 16 13 C -0.05 -0.68 0.51 -154.43 -0.08 -0.76 16 14 C -0.12 -1.93 4.90 -26.61 -0.13 -2.06 16 15 C 0.14 2.85 6.04 -3.71 -0.02 2.82 16 16 N -0.59 -13.98 2.99 -172.33 -0.52 -14.49 16 17 C -0.25 -6.65 9.60 -15.06 -0.14 -6.80 16 18 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 19 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 20 N -0.91 -25.42 10.96 55.49 0.61 -24.82 16 21 Si 0.90 21.27 29.57 -169.99 -5.03 16.24 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 C 0.17 3.75 4.80 -3.71 -0.02 3.74 16 26 C -0.13 -2.26 4.14 -26.62 -0.11 -2.37 16 27 C -0.12 -1.44 4.90 -26.61 -0.13 -1.57 16 28 C 0.10 1.07 4.86 -3.70 -0.02 1.05 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.88 6.61 -51.92 -0.34 0.54 16 32 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.17 1.40 7.41 -52.48 -0.39 1.01 16 34 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 35 H 0.08 1.11 6.73 -51.93 -0.35 0.76 16 36 H 0.09 1.55 4.99 -51.93 -0.26 1.29 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 41 H 0.02 0.38 6.68 -51.93 -0.35 0.03 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.09 2.25 6.00 -51.93 -0.31 1.94 16 44 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.05 0.74 4.99 -51.93 -0.26 0.48 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.80 6.67 -51.93 -0.35 0.46 16 50 H 0.07 0.69 5.15 -51.93 -0.27 0.42 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -30.51 373.54 -10.31 -40.81 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.35 Total: 1.14 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.96 Total: 2.30 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.68 Total: -57.97 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.51 -10.31 -40.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957507688.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.133 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds