Wall clock time and date at job start Wed Apr 1 2020 03:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32167 * 120.53442 * 2 1 4 4 C 1.31850 * 120.96529 * 179.97438 * 3 2 1 5 5 N 1.31880 * 122.10017 * 359.97438 * 4 3 2 6 6 C 1.32131 * 120.96597 * 359.73984 * 5 4 3 7 7 C 1.39928 * 120.54202 * 179.97438 * 2 1 3 8 8 C 1.47833 * 120.93811 * 0.02638 * 7 2 1 9 9 O 1.21553 * 119.99735 * 311.72872 * 8 7 2 10 10 N 1.34773 * 120.00334 * 131.73039 * 8 7 2 11 11 C 1.46923 * 120.63958 * 174.66179 * 10 8 7 12 12 C 1.53189 * 108.89363 * 126.42568 * 11 10 8 13 13 C 1.53023 * 109.34074 * 54.54863 * 12 11 10 14 14 C 1.53044 * 109.43881 * 178.76771 * 13 12 11 15 15 C 1.53187 * 109.32670 * 301.31162 * 14 13 12 16 16 N 1.46929 * 108.77134 * 305.35306 * 15 14 13 17 17 C 1.36933 * 120.64210 * 233.61803 * 16 15 14 18 18 H 1.07994 * 120.00202 * 30.15392 * 17 16 15 19 19 C 1.38818 * 120.00250 * 210.15857 * 17 16 15 20 20 N 1.31620 * 119.99928 * 10.68829 * 19 17 16 21 21 Si 1.86795 * 120.00205 * 190.69402 * 19 17 16 22 22 H 1.48500 * 109.47251 * 59.99554 * 21 19 17 23 23 H 1.48502 * 109.47376 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47143 * 299.99763 * 21 19 17 25 25 C 1.46926 * 118.71662 * 53.64524 * 16 15 14 26 26 C 1.53033 * 109.46110 * 58.70115 * 13 12 11 27 27 C 1.53052 * 109.54839 * 298.70041 * 13 12 11 28 28 C 1.46959 * 120.66229 * 354.46757 * 10 8 7 29 29 H 1.09004 * 109.47269 * 273.75911 * 1 2 3 30 30 H 1.08994 * 109.47895 * 33.76988 * 1 2 3 31 31 H 1.09007 * 109.46738 * 153.77222 * 1 2 3 32 32 H 1.08000 * 118.94833 * 179.97438 * 4 3 2 33 33 H 1.08005 * 120.54144 * 180.26734 * 6 5 4 34 34 H 1.09002 * 109.58493 * 6.56601 * 11 10 8 35 35 H 1.09000 * 109.58745 * 246.28093 * 11 10 8 36 36 H 1.09004 * 109.49251 * 174.50535 * 12 11 10 37 37 H 1.09000 * 109.49279 * 294.58470 * 12 11 10 38 38 H 1.09001 * 109.49946 * 61.26696 * 14 13 12 39 39 H 1.09003 * 109.50023 * 181.35640 * 14 13 12 40 40 H 1.09001 * 109.59022 * 185.56927 * 15 14 13 41 41 H 1.09000 * 109.70749 * 65.21495 * 15 14 13 42 42 H 0.96991 * 120.00380 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.58223 * 186.58076 * 25 16 15 44 44 H 1.08997 * 109.70245 * 66.22736 * 25 16 15 45 45 H 1.08992 * 109.49651 * 178.65240 * 26 13 12 46 46 H 1.08997 * 109.49080 * 298.74099 * 26 13 12 47 47 H 1.08992 * 109.49270 * 181.26904 * 27 13 12 48 48 H 1.08998 * 109.49344 * 301.35336 * 27 13 12 49 49 H 1.08995 * 109.47149 * 113.79843 * 28 10 8 50 50 H 1.09004 * 109.71086 * 353.51343 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4969 1.1483 0.0005 5 7 4.2061 0.0364 0.0015 6 6 3.6165 -1.1460 0.0072 7 6 2.2180 -1.2051 0.0005 8 6 1.5122 -2.5041 0.0005 9 8 0.6061 -2.7033 0.7859 10 7 1.8734 -3.4673 -0.8701 11 6 1.2624 -4.8020 -0.8060 12 6 0.6985 -5.1562 -2.1856 13 6 1.8040 -5.0211 -3.2349 14 6 1.2510 -5.4040 -4.6096 15 6 0.7251 -6.8420 -4.5618 16 7 1.7972 -7.7217 -4.0766 17 6 2.1716 -8.8266 -4.7937 18 1 2.0810 -8.8281 -5.8698 19 6 2.6675 -9.9448 -4.1374 20 7 2.5839 -10.0295 -2.8266 21 14 3.4536 -11.3292 -5.1144 22 1 4.6237 -10.8043 -5.8631 23 1 3.8998 -12.3990 -4.1861 24 1 2.4627 -11.8847 -6.0709 25 6 2.4595 -7.3933 -2.8069 26 6 2.9660 -5.9491 -2.8738 27 6 2.3007 -3.5738 -3.2721 28 6 2.8827 -3.2023 -1.9048 29 1 -0.3634 0.0674 1.0255 30 1 -0.3635 0.8542 -0.5712 31 1 -0.3633 -0.9219 -0.4542 32 1 4.0125 2.0973 0.0001 33 1 4.2040 -2.0523 0.0124 34 1 0.4571 -4.8003 -0.0715 35 1 2.0162 -5.5356 -0.5201 36 1 0.3300 -6.1820 -2.1755 37 1 -0.1193 -4.4779 -2.4293 38 1 0.4384 -4.7282 -4.8761 39 1 2.0440 -5.3313 -5.3540 40 1 0.4212 -7.1534 -5.5612 41 1 -0.1283 -6.8990 -3.8862 42 1 2.9300 -10.8109 -2.3680 43 1 3.3004 -8.0684 -2.6481 44 1 1.7500 -7.4940 -1.9856 45 1 3.7435 -5.8712 -3.6336 46 1 3.3735 -5.6614 -1.9047 47 1 3.0722 -3.4736 -4.0354 48 1 1.4687 -2.9096 -3.5060 49 1 3.7700 -3.8044 -1.7095 50 1 3.1493 -2.1453 -1.8962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957507688.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:24 Heat of formation + Delta-G solvation = 19.303053 kcal Electronic energy + Delta-G solvation = -31548.634355 eV Core-core repulsion = 27575.654759 eV Total energy + Delta-G solvation = -3972.979596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.55756 -41.39633 -39.89313 -37.45182 -35.60109 -35.17286 -33.97071 -32.95607 -32.07114 -31.50123 -30.02614 -29.29384 -26.97400 -26.22581 -24.70752 -24.57938 -23.81484 -23.52370 -22.26148 -20.90198 -19.36082 -19.11043 -18.59102 -17.87673 -17.84941 -17.28391 -16.82305 -16.44988 -15.91025 -15.72096 -15.59307 -15.28109 -15.06214 -15.02561 -14.88601 -14.73996 -14.53869 -14.24957 -14.06991 -13.94963 -13.47459 -13.31524 -13.20856 -12.89236 -12.84505 -12.79726 -12.72280 -12.52470 -12.27084 -12.20697 -12.01087 -11.76113 -11.70322 -11.63045 -11.20804 -11.05207 -11.02308 -10.92315 -10.58803 -10.46127 -10.42500 -9.67245 -8.55222 -7.82317 -5.31323 -0.56049 -0.13146 1.45654 1.47577 1.48565 1.55324 1.81341 2.52561 2.59022 2.92251 3.05273 3.23725 3.28523 3.32078 3.73842 3.76611 3.77362 3.83134 3.86879 4.10747 4.21190 4.28498 4.33196 4.37542 4.44788 4.57487 4.58350 4.62114 4.65118 4.70764 4.73581 4.77661 4.87572 4.88817 4.96136 5.03602 5.06003 5.08084 5.15978 5.24595 5.34722 5.37286 5.42129 5.48160 5.58178 5.61981 5.70195 5.75260 5.93000 6.25509 6.45637 6.89794 6.92759 7.21379 7.93369 8.43820 9.21822 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.002616 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.256384 B =10701.874477 C =10873.042859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.218 3.782 3 N -0.533 5.533 4 C 0.315 3.685 5 N -0.533 5.533 6 C 0.191 3.809 7 C -0.247 4.247 8 C 0.572 3.428 9 O -0.563 6.563 10 N -0.591 5.591 11 C 0.119 3.881 12 C -0.114 4.114 13 C -0.042 4.042 14 C -0.110 4.110 15 C 0.140 3.860 16 N -0.609 5.609 17 C -0.260 4.260 18 H 0.061 0.939 19 C -0.049 4.049 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.278 1.278 25 C 0.179 3.821 26 C -0.118 4.118 27 C -0.114 4.114 28 C 0.103 3.897 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.191 0.809 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.015 0.985 42 H 0.248 0.752 43 H 0.049 0.951 44 H 0.000 1.000 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 22.746 3.420 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.072 3.928 3 N -0.248 5.248 4 C 0.029 3.971 5 N -0.247 5.247 6 C 0.024 3.976 7 C -0.254 4.254 8 C 0.360 3.640 9 O -0.442 6.442 10 N -0.323 5.323 11 C -0.003 4.003 12 C -0.152 4.152 13 C -0.042 4.042 14 C -0.149 4.149 15 C 0.015 3.985 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.079 0.921 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.204 1.204 25 C 0.054 3.946 26 C -0.157 4.157 27 C -0.152 4.152 28 C -0.019 4.019 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.251 0.749 33 H 0.208 0.792 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.018 0.982 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.239 23.376 3.904 23.732 hybrid contribution -0.125 -2.284 -0.293 2.306 sum 1.115 21.091 3.611 21.427 Atomic orbital electron populations 1.20855 0.86484 1.04227 1.04663 1.22073 0.98469 0.86776 0.85522 1.68455 1.11051 1.29187 1.16114 1.25922 0.86410 0.98354 0.86456 1.68591 1.41388 0.99104 1.15643 1.23811 0.90144 0.97577 0.86083 1.21498 0.97137 0.95289 1.11504 1.18001 0.82328 0.83219 0.80484 1.90783 1.31122 1.81125 1.41200 1.48068 1.41135 1.11641 1.31425 1.21574 0.98424 0.82241 0.98104 1.21875 0.97963 1.01522 0.93842 1.20334 0.94757 0.94536 0.94596 1.21905 1.00376 0.96308 0.96336 1.21062 0.89974 0.90671 0.96812 1.44252 1.38519 1.26734 1.23803 1.19450 1.37470 0.91847 0.90285 0.92088 1.25811 1.02762 0.99322 0.96564 1.70119 1.50317 1.29620 1.08000 0.85389 0.78631 0.79005 0.77676 1.20397 1.22129 1.20438 1.20598 0.95376 0.92667 0.85981 1.22126 0.97138 0.96007 1.00451 1.21920 1.01654 0.95064 0.96607 1.22104 0.90857 1.02208 0.86754 0.88729 0.88253 0.90820 0.74928 0.79238 0.90134 0.90972 0.91956 0.91528 0.90779 0.92531 0.93767 0.96738 0.94254 0.93276 0.98221 0.93145 0.91357 0.89301 0.91149 0.89334 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.42 71.23 0.67 -1.18 16 2 C 0.22 4.33 6.86 42.92 0.29 4.62 16 3 N -0.53 -9.77 10.36 -187.07 -1.94 -11.71 16 4 C 0.31 4.67 12.27 180.84 2.22 6.89 16 5 N -0.53 -9.01 10.42 -198.97 -2.07 -11.09 16 6 C 0.19 3.24 8.87 85.07 0.75 3.99 16 7 C -0.25 -4.99 4.84 -19.91 -0.10 -5.09 16 8 C 0.57 13.92 6.41 86.78 0.56 14.47 16 9 O -0.56 -17.35 15.10 -3.88 -0.06 -17.41 16 10 N -0.59 -13.28 2.98 -822.28 -2.45 -15.73 16 11 C 0.12 3.16 5.97 86.36 0.52 3.67 16 12 C -0.11 -3.21 4.15 30.67 0.13 -3.08 16 13 C -0.04 -1.14 0.51 -52.13 -0.03 -1.17 16 14 C -0.11 -3.31 4.90 30.67 0.15 -3.16 16 15 C 0.14 5.54 6.04 86.36 0.52 6.06 16 16 N -0.61 -29.43 2.99 -699.12 -2.09 -31.52 16 17 C -0.26 -14.07 9.60 84.04 0.81 -13.26 16 18 H 0.06 3.24 7.85 -2.91 -0.02 3.22 16 19 C -0.05 -2.72 5.06 84.86 0.43 -2.29 16 20 N -0.93 -54.33 10.96 21.65 0.24 -54.09 16 21 Si 0.96 44.47 29.57 68.60 2.03 46.50 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 C 0.18 8.10 4.80 86.36 0.41 8.52 16 26 C -0.12 -3.89 4.14 30.67 0.13 -3.76 16 27 C -0.11 -2.28 4.90 30.67 0.15 -2.13 16 28 C 0.10 1.83 4.86 86.35 0.42 2.25 16 29 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.47 6.61 -2.38 -0.02 1.45 16 32 H 0.23 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.19 2.47 7.41 -2.91 -0.02 2.44 16 34 H 0.08 2.32 7.00 -2.39 -0.02 2.30 16 35 H 0.07 2.02 6.73 -2.39 -0.02 2.01 16 36 H 0.06 2.15 4.99 -2.39 -0.01 2.14 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.76 7.93 -2.39 -0.02 1.74 16 41 H 0.01 0.59 6.68 -2.39 -0.02 0.58 16 42 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 43 H 0.05 2.60 6.00 -2.39 -0.01 2.59 16 44 H 0.00 -0.01 6.73 -2.39 -0.02 -0.03 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.07 1.97 4.99 -2.39 -0.01 1.96 16 47 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.09 1.47 6.67 -2.39 -0.02 1.46 16 50 H 0.09 1.38 5.15 -2.38 -0.01 1.37 16 Total: -1.00 -67.79 373.54 2.65 -65.14 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.96 Total: 14.54 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 8.03 Total: 15.36 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -8.32 Total: -124.13 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.06 Total: -17.41 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.79 2.65 -65.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957507688.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.441 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds