Wall clock time and date at job start Wed Apr 1 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38818 * 120.41868 * 2 1 4 4 C 1.38777 * 118.50712 * 180.02562 * 3 2 1 5 5 N 1.32123 * 119.16494 * 0.27990 * 4 3 2 6 6 C 1.32438 * 120.76987 * 359.43810 * 5 4 3 7 7 C 1.48538 * 119.18931 * 180.31205 * 6 5 4 8 8 O 1.21473 * 120.00164 * 195.02650 * 7 6 5 9 9 N 1.34775 * 119.99809 * 15.03252 * 7 6 5 10 10 C 1.46932 * 120.64285 * 6.28428 * 9 7 6 11 11 C 1.53623 * 108.53465 * 126.33443 * 10 9 7 12 12 C 1.53042 * 109.26566 * 54.86313 * 11 10 9 13 13 C 1.53032 * 109.43468 * 58.57567 * 12 11 10 14 14 C 1.53188 * 109.33607 * 181.23396 * 13 12 11 15 15 N 1.46933 * 108.77900 * 305.37358 * 14 13 12 16 16 C 1.36942 * 120.64166 * 233.61739 * 15 14 13 17 17 H 1.07992 * 120.00295 * 32.79854 * 16 15 14 18 18 C 1.38813 * 119.99642 * 212.80020 * 16 15 14 19 19 N 1.31617 * 120.00146 * 10.67179 * 18 16 15 20 20 Si 1.86796 * 119.99810 * 190.67664 * 18 16 15 21 21 H 1.48500 * 109.47477 * 89.99723 * 20 18 16 22 22 H 1.48495 * 109.47314 * 209.99904 * 20 18 16 23 23 H 1.48504 * 109.47286 * 329.99526 * 20 18 16 24 24 C 1.46924 * 118.71694 * 53.63756 * 15 14 13 25 25 C 1.53042 * 109.39678 * 178.59807 * 12 11 10 26 26 C 1.53030 * 109.55014 * 298.56616 * 12 11 10 27 27 C 1.46933 * 120.64217 * 186.57601 * 9 7 6 28 28 N 1.32094 * 120.41700 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47457 * 89.99423 * 1 2 3 30 30 H 1.08998 * 109.46563 * 210.00168 * 1 2 3 31 31 H 1.09002 * 109.46848 * 329.99083 * 1 2 3 32 32 H 1.08000 * 120.74764 * 0.02562 * 3 2 1 33 33 H 1.08010 * 120.41674 * 180.02562 * 4 3 2 34 34 H 1.08993 * 109.58963 * 246.16161 * 10 9 7 35 35 H 1.08995 * 109.58547 * 6.59861 * 10 9 7 36 36 H 1.09010 * 109.62577 * 294.86850 * 11 10 9 37 37 H 1.08999 * 109.42606 * 174.74570 * 11 10 9 38 38 H 1.09002 * 109.49271 * 301.19192 * 13 12 11 39 39 H 1.09001 * 109.49709 * 61.27382 * 13 12 11 40 40 H 1.08999 * 109.58943 * 185.58897 * 14 13 12 41 41 H 1.08996 * 109.70557 * 65.22967 * 14 13 12 42 42 H 0.97007 * 119.99855 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.59172 * 186.57385 * 24 15 14 44 44 H 1.09001 * 109.70506 * 66.21408 * 24 15 14 45 45 H 1.08999 * 109.49547 * 298.69834 * 25 12 11 46 46 H 1.09006 * 109.48608 * 58.77943 * 25 12 11 47 47 H 1.08993 * 109.49316 * 301.33712 * 26 12 11 48 48 H 1.08999 * 109.49576 * 181.24998 * 26 12 11 49 49 H 1.09003 * 109.58444 * 353.39680 * 27 9 7 50 50 H 1.08995 * 109.58707 * 113.67796 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1508 -0.0005 5 7 4.2019 -0.0237 -0.0067 6 6 3.5006 -1.1472 -0.0011 7 6 4.2170 -2.4484 -0.0013 8 8 3.6188 -3.4711 -0.2691 9 7 5.5308 -2.4943 0.2959 10 6 6.2373 -1.2905 0.7549 11 6 6.9432 -1.6142 2.0804 12 6 7.8445 -2.8359 1.8874 13 6 8.8662 -2.5459 0.7856 14 6 9.7472 -3.7809 0.5729 15 7 10.3413 -4.1656 1.8605 16 6 11.6962 -4.3201 1.9857 17 1 12.3659 -3.7056 1.4025 18 6 12.2087 -5.2666 2.8621 19 7 11.4087 -6.1545 3.4135 20 14 14.0340 -5.2803 3.2592 21 1 14.2909 -4.4133 4.4372 22 1 14.4641 -6.6687 3.5632 23 1 14.7982 -4.7696 2.0927 24 6 9.4535 -4.3817 3.0111 25 6 8.5760 -3.1399 3.1968 26 6 6.9926 -4.0427 1.4877 27 6 6.2857 -3.7476 0.1610 28 7 2.1758 -1.1391 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5140 32 1 1.6891 2.1432 0.0004 33 1 4.1745 2.0635 -0.0001 34 1 6.9738 -0.9923 0.0089 35 1 5.5216 -0.4829 0.9082 36 1 6.1998 -1.8284 2.8484 37 1 7.5479 -0.7607 2.3870 38 1 8.3441 -2.3076 -0.1411 39 1 9.4890 -1.7012 1.0802 40 1 10.5385 -3.5471 -0.1392 41 1 9.1420 -4.6025 0.1899 42 1 11.7669 -6.8157 4.0263 43 1 10.0509 -4.5443 3.9082 44 1 8.8222 -5.2516 2.8299 45 1 9.2014 -2.2900 3.4699 46 1 7.8471 -3.3243 3.9861 47 1 6.2491 -4.2352 2.2611 48 1 7.6326 -4.9175 1.3721 49 1 5.6019 -4.5622 -0.0777 50 1 7.0242 -3.6456 -0.6341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957542074.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:32 Heat of formation + Delta-G solvation = 54.409907 kcal Electronic energy + Delta-G solvation = -31154.289269 eV Core-core repulsion = 27182.832020 eV Total energy + Delta-G solvation = -3971.457249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.75994 -40.18498 -38.53644 -36.01331 -34.98317 -33.45240 -33.02751 -31.27442 -30.85556 -29.98024 -29.01844 -28.01652 -25.95879 -24.81453 -23.61025 -23.15703 -23.03161 -21.85299 -20.86813 -19.78433 -18.17000 -17.86223 -17.24176 -16.65661 -16.33937 -15.94620 -15.86476 -15.02901 -14.87924 -14.69470 -14.18747 -14.13719 -14.04262 -13.71822 -13.61003 -13.49124 -13.32835 -13.13278 -12.85282 -12.80643 -12.62717 -12.27603 -11.53495 -11.46531 -11.29020 -11.22843 -11.13479 -10.97438 -10.86821 -10.73659 -10.49542 -10.36042 -10.15797 -10.05574 -9.96582 -9.91592 -9.76070 -9.41949 -9.39325 -9.10075 -8.44890 -8.41431 -6.51403 -5.73816 -3.22273 0.10109 0.60279 2.46046 2.58762 3.39143 3.42679 3.45818 3.47019 3.60727 3.76185 3.99310 4.40052 4.52147 4.53743 4.71416 4.94328 5.05372 5.10837 5.13210 5.17570 5.26259 5.36071 5.42405 5.45489 5.49416 5.55955 5.67294 5.78736 5.86195 5.92273 6.03246 6.11753 6.14599 6.18501 6.25196 6.30749 6.44370 6.47314 6.50354 6.64078 6.64842 6.74932 6.79282 6.93697 6.99966 7.08605 7.29872 7.45256 7.55323 7.75729 7.83952 8.05930 8.53928 9.28213 9.89813 10.49416 11.33927 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.002368 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.745945 B =11819.295109 C =12134.350138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.172 3.828 3 C -0.213 4.213 4 C 0.141 3.859 5 N -0.487 5.487 6 C 0.296 3.704 7 C 0.579 3.421 8 O -0.513 6.513 9 N -0.580 5.580 10 C 0.080 3.920 11 C -0.125 4.125 12 C -0.047 4.047 13 C -0.124 4.124 14 C 0.145 3.855 15 N -0.590 5.590 16 C -0.251 4.251 17 H 0.062 0.938 18 C 0.004 3.996 19 N -0.904 5.904 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.173 3.827 25 C -0.130 4.130 26 C -0.123 4.123 27 C 0.111 3.889 28 N -0.471 5.471 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.178 0.822 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.081 0.919 44 H 0.020 0.980 45 H 0.053 0.947 46 H 0.045 0.955 47 H 0.059 0.941 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.726 17.630 -5.915 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.025 3.975 3 C -0.235 4.235 4 C -0.023 4.023 5 N -0.205 5.205 6 C 0.026 3.974 7 C 0.362 3.638 8 O -0.387 6.387 9 N -0.313 5.313 10 C -0.042 4.042 11 C -0.164 4.164 12 C -0.048 4.048 13 C -0.163 4.163 14 C 0.018 3.982 15 N -0.313 5.313 16 C -0.381 4.381 17 H 0.079 0.921 18 C -0.194 4.194 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.047 3.953 25 C -0.169 4.169 26 C -0.161 4.161 27 C -0.010 4.010 28 N -0.187 5.187 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.171 0.829 33 H 0.195 0.805 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.110 0.890 49 H 0.107 0.893 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.510 16.009 -5.971 25.934 hybrid contribution 0.654 0.934 0.363 1.196 sum -18.856 16.944 -5.608 25.963 Atomic orbital electron populations 1.20829 0.87212 1.04437 1.04031 1.21915 0.98030 0.87796 0.89710 1.22994 0.96636 1.00686 1.03139 1.23491 0.92366 0.96454 0.90039 1.68561 1.39524 0.98956 1.13412 1.23035 0.87402 0.93084 0.93854 1.17290 0.81841 0.85652 0.79036 1.90793 1.66186 1.33138 1.48541 1.47946 1.07355 1.12425 1.63541 1.22950 0.97841 0.87575 0.95875 1.22150 0.98571 0.98981 0.96671 1.20395 0.94029 0.93397 0.96931 1.22132 0.97168 1.00235 0.96767 1.20937 0.94685 0.93172 0.89385 1.43964 1.02981 1.80654 1.03748 1.19151 0.82059 1.13475 1.23407 0.92056 1.25189 0.97520 0.95395 1.01341 1.69982 1.33906 1.17854 1.33058 0.86290 0.85354 0.76770 0.78313 1.21512 1.21753 1.20466 1.20749 0.91048 0.91016 0.92456 1.22236 0.98386 1.01718 0.94573 1.22028 0.98597 0.99748 0.95729 1.21835 0.95006 0.85264 0.98878 1.68138 1.08508 1.30450 1.11555 0.89337 0.89517 0.89807 0.82947 0.80523 0.90986 0.85378 0.92467 0.91082 0.93043 0.92463 0.93244 0.96359 0.93686 0.90042 0.96177 0.92799 0.93670 0.92265 0.88986 0.89335 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.22 36.01 0.37 -0.18 16 2 C 0.17 1.48 6.82 -82.26 -0.56 0.92 16 3 C -0.21 -1.27 9.87 -39.17 -0.39 -1.66 16 4 C 0.14 0.98 11.30 -17.23 -0.19 0.78 16 5 N -0.49 -5.20 6.30 -11.12 -0.07 -5.27 16 6 C 0.30 3.98 7.35 -157.07 -1.15 2.83 16 7 C 0.58 9.16 7.70 -12.01 -0.09 9.07 16 8 O -0.51 -9.65 16.33 5.39 0.09 -9.57 16 9 N -0.58 -8.39 2.97 -173.35 -0.51 -8.90 16 10 C 0.08 1.00 5.41 -3.48 -0.02 0.98 16 11 C -0.13 -1.70 4.92 -26.39 -0.13 -1.83 16 12 C -0.05 -0.76 0.51 -154.43 -0.08 -0.84 16 13 C -0.12 -2.07 4.15 -26.62 -0.11 -2.18 16 14 C 0.14 2.97 6.04 -3.71 -0.02 2.94 16 15 N -0.59 -14.56 2.98 -172.32 -0.51 -15.08 16 16 C -0.25 -6.86 9.56 -15.06 -0.14 -7.00 16 17 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 18 C 0.00 0.12 5.04 -17.43 -0.09 0.03 16 19 N -0.90 -26.26 11.16 55.49 0.62 -25.64 16 20 Si 0.90 21.78 29.57 -169.99 -5.03 16.76 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.17 4.06 4.77 -3.72 -0.02 4.05 16 25 C -0.13 -2.45 4.90 -26.61 -0.13 -2.58 16 26 C -0.12 -2.00 4.15 -26.62 -0.11 -2.11 16 27 C 0.11 1.67 5.97 -3.71 -0.02 1.65 16 28 N -0.47 -6.09 10.10 -7.37 -0.07 -6.17 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.21 8.10 -51.93 -0.42 -0.21 16 32 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 33 H 0.18 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.07 0.89 6.66 -51.93 -0.35 0.54 16 35 H 0.13 1.50 4.13 -77.75 -0.32 1.18 16 36 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.76 4.98 -51.93 -0.26 0.51 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 41 H 0.02 0.38 6.74 -51.93 -0.35 0.03 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.08 2.18 6.22 -51.93 -0.32 1.86 16 44 H 0.02 0.50 6.67 -51.93 -0.35 0.15 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.09 1.70 4.99 -51.93 -0.26 1.44 16 49 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 50 H 0.08 1.10 6.74 -51.93 -0.35 0.75 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -33.56 376.96 -10.23 -43.78 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.52 Total: -0.47 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -2.89 Total: 4.86 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.55 Total: -61.05 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.56 -10.23 -43.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957542074.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.194 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds