Wall clock time and date at job start Wed Apr 1 2020 03:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38818 * 120.41868 * 2 1 4 4 C 1.38777 * 118.50712 * 180.02562 * 3 2 1 5 5 N 1.32123 * 119.16494 * 0.27990 * 4 3 2 6 6 C 1.32438 * 120.76987 * 359.43810 * 5 4 3 7 7 C 1.48538 * 119.18931 * 180.31205 * 6 5 4 8 8 O 1.21473 * 120.00164 * 195.02650 * 7 6 5 9 9 N 1.34775 * 119.99809 * 15.03252 * 7 6 5 10 10 C 1.46932 * 120.64285 * 6.28428 * 9 7 6 11 11 C 1.53623 * 108.53465 * 126.33443 * 10 9 7 12 12 C 1.53042 * 109.26566 * 54.86313 * 11 10 9 13 13 C 1.53032 * 109.43468 * 58.57567 * 12 11 10 14 14 C 1.53188 * 109.33607 * 181.23396 * 13 12 11 15 15 N 1.46933 * 108.77900 * 305.37358 * 14 13 12 16 16 C 1.36942 * 120.64166 * 233.61739 * 15 14 13 17 17 H 1.07992 * 120.00295 * 32.79854 * 16 15 14 18 18 C 1.38813 * 119.99642 * 212.80020 * 16 15 14 19 19 N 1.31617 * 120.00146 * 10.67179 * 18 16 15 20 20 Si 1.86796 * 119.99810 * 190.67664 * 18 16 15 21 21 H 1.48500 * 109.47477 * 89.99723 * 20 18 16 22 22 H 1.48495 * 109.47314 * 209.99904 * 20 18 16 23 23 H 1.48504 * 109.47286 * 329.99526 * 20 18 16 24 24 C 1.46924 * 118.71694 * 53.63756 * 15 14 13 25 25 C 1.53042 * 109.39678 * 178.59807 * 12 11 10 26 26 C 1.53030 * 109.55014 * 298.56616 * 12 11 10 27 27 C 1.46933 * 120.64217 * 186.57601 * 9 7 6 28 28 N 1.32094 * 120.41700 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47457 * 89.99423 * 1 2 3 30 30 H 1.08998 * 109.46563 * 210.00168 * 1 2 3 31 31 H 1.09002 * 109.46848 * 329.99083 * 1 2 3 32 32 H 1.08000 * 120.74764 * 0.02562 * 3 2 1 33 33 H 1.08010 * 120.41674 * 180.02562 * 4 3 2 34 34 H 1.08993 * 109.58963 * 246.16161 * 10 9 7 35 35 H 1.08995 * 109.58547 * 6.59861 * 10 9 7 36 36 H 1.09010 * 109.62577 * 294.86850 * 11 10 9 37 37 H 1.08999 * 109.42606 * 174.74570 * 11 10 9 38 38 H 1.09002 * 109.49271 * 301.19192 * 13 12 11 39 39 H 1.09001 * 109.49709 * 61.27382 * 13 12 11 40 40 H 1.08999 * 109.58943 * 185.58897 * 14 13 12 41 41 H 1.08996 * 109.70557 * 65.22967 * 14 13 12 42 42 H 0.97007 * 119.99855 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.59172 * 186.57385 * 24 15 14 44 44 H 1.09001 * 109.70506 * 66.21408 * 24 15 14 45 45 H 1.08999 * 109.49547 * 298.69834 * 25 12 11 46 46 H 1.09006 * 109.48608 * 58.77943 * 25 12 11 47 47 H 1.08993 * 109.49316 * 301.33712 * 26 12 11 48 48 H 1.08999 * 109.49576 * 181.24998 * 26 12 11 49 49 H 1.09003 * 109.58444 * 353.39680 * 27 9 7 50 50 H 1.08995 * 109.58707 * 113.67796 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1508 -0.0005 5 7 4.2019 -0.0237 -0.0067 6 6 3.5006 -1.1472 -0.0011 7 6 4.2170 -2.4484 -0.0013 8 8 3.6188 -3.4711 -0.2691 9 7 5.5308 -2.4943 0.2959 10 6 6.2373 -1.2905 0.7549 11 6 6.9432 -1.6142 2.0804 12 6 7.8445 -2.8359 1.8874 13 6 8.8662 -2.5459 0.7856 14 6 9.7472 -3.7809 0.5729 15 7 10.3413 -4.1656 1.8605 16 6 11.6962 -4.3201 1.9857 17 1 12.3659 -3.7056 1.4025 18 6 12.2087 -5.2666 2.8621 19 7 11.4087 -6.1545 3.4135 20 14 14.0340 -5.2803 3.2592 21 1 14.2909 -4.4133 4.4372 22 1 14.4641 -6.6687 3.5632 23 1 14.7982 -4.7696 2.0927 24 6 9.4535 -4.3817 3.0111 25 6 8.5760 -3.1399 3.1968 26 6 6.9926 -4.0427 1.4877 27 6 6.2857 -3.7476 0.1610 28 7 2.1758 -1.1391 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5140 32 1 1.6891 2.1432 0.0004 33 1 4.1745 2.0635 -0.0001 34 1 6.9738 -0.9923 0.0089 35 1 5.5216 -0.4829 0.9082 36 1 6.1998 -1.8284 2.8484 37 1 7.5479 -0.7607 2.3870 38 1 8.3441 -2.3076 -0.1411 39 1 9.4890 -1.7012 1.0802 40 1 10.5385 -3.5471 -0.1392 41 1 9.1420 -4.6025 0.1899 42 1 11.7669 -6.8157 4.0263 43 1 10.0509 -4.5443 3.9082 44 1 8.8222 -5.2516 2.8299 45 1 9.2014 -2.2900 3.4699 46 1 7.8471 -3.3243 3.9861 47 1 6.2491 -4.2352 2.2611 48 1 7.6326 -4.9175 1.3721 49 1 5.6019 -4.5622 -0.0777 50 1 7.0242 -3.6456 -0.6341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957542074.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:31 Heat of formation + Delta-G solvation = 33.817827 kcal Electronic energy + Delta-G solvation = -31155.182208 eV Core-core repulsion = 27182.832020 eV Total energy + Delta-G solvation = -3972.350188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.54360 -41.36623 -39.84915 -37.46315 -35.82235 -34.95438 -33.74313 -33.01639 -32.09093 -31.61818 -29.76843 -29.33708 -27.13576 -26.31173 -24.75360 -24.23368 -24.08517 -23.43541 -22.24977 -21.08691 -19.36048 -18.91425 -18.55376 -17.96019 -17.32460 -16.92324 -16.81350 -16.78645 -15.83609 -15.81032 -15.65471 -15.36672 -15.24913 -15.08754 -14.83194 -14.65236 -14.56176 -14.31659 -14.11015 -13.88440 -13.28466 -13.17300 -13.13004 -12.99979 -12.90173 -12.75686 -12.57006 -12.25835 -12.19778 -12.13441 -12.07355 -11.79931 -11.73046 -11.62965 -11.29813 -11.06150 -10.96019 -10.84117 -10.56344 -10.49406 -10.02685 -9.65432 -8.53296 -7.83407 -5.35323 -0.61908 0.03061 1.46786 1.47096 1.48391 1.56429 1.59035 2.51847 2.66529 2.80499 3.05659 3.31113 3.54557 3.67461 3.75422 3.83081 3.86371 3.90249 4.05608 4.15933 4.23110 4.32470 4.41302 4.49659 4.60359 4.61561 4.63899 4.71964 4.76571 4.77590 4.80789 4.82649 4.84183 4.99845 5.01269 5.06091 5.10178 5.16659 5.19783 5.32010 5.34579 5.44237 5.45565 5.49100 5.60202 5.65652 5.69487 5.85479 5.92030 6.22095 6.45198 6.74669 7.00324 7.19968 7.90869 8.44503 9.21460 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.002368 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.745945 B =11819.295109 C =12134.350138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.150 3.850 3 C -0.183 4.183 4 C 0.137 3.863 5 N -0.494 5.494 6 C 0.268 3.732 7 C 0.573 3.427 8 O -0.560 6.560 9 N -0.578 5.578 10 C 0.084 3.916 11 C -0.116 4.116 12 C -0.042 4.042 13 C -0.109 4.109 14 C 0.140 3.860 15 N -0.608 5.608 16 C -0.259 4.259 17 H 0.064 0.936 18 C -0.051 4.051 19 N -0.937 5.937 20 Si 0.967 3.033 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.268 1.268 24 C 0.182 3.818 25 C -0.117 4.117 26 C -0.114 4.114 27 C 0.118 3.882 28 N -0.511 5.511 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.201 0.799 33 H 0.222 0.778 34 H 0.083 0.917 35 H 0.147 0.853 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.014 0.986 42 H 0.248 0.752 43 H 0.043 0.957 44 H -0.003 1.003 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.052 0.948 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.713 22.251 -6.627 31.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.005 3.995 3 C -0.205 4.205 4 C -0.027 4.027 5 N -0.213 5.213 6 C -0.001 4.001 7 C 0.358 3.642 8 O -0.437 6.437 9 N -0.310 5.310 10 C -0.037 4.037 11 C -0.154 4.154 12 C -0.043 4.043 13 C -0.147 4.147 14 C 0.015 3.985 15 N -0.331 5.331 16 C -0.390 4.390 17 H 0.081 0.919 18 C -0.247 4.247 19 N -0.583 5.583 20 Si 0.796 3.204 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.192 1.192 24 C 0.056 3.944 25 C -0.157 4.157 26 C -0.152 4.152 27 C -0.004 4.004 28 N -0.228 5.228 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.218 0.782 33 H 0.238 0.762 34 H 0.101 0.899 35 H 0.163 0.837 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.015 0.985 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.503 20.688 -6.698 29.887 hybrid contribution 0.859 -0.424 0.540 1.100 sum -19.644 20.263 -6.158 28.886 Atomic orbital electron populations 1.20948 0.85163 1.05285 1.04864 1.22581 0.99496 0.87747 0.89661 1.23514 0.96370 1.01452 0.99130 1.24305 0.93446 0.96326 0.88589 1.68369 1.39790 0.99362 1.13769 1.22368 0.87739 0.92697 0.97309 1.17787 0.81946 0.86491 0.77994 1.90747 1.67170 1.35119 1.50626 1.48003 1.07254 1.12540 1.63200 1.23113 0.98193 0.87149 0.95271 1.22070 0.98073 0.97866 0.97422 1.20345 0.94127 0.94641 0.95149 1.21969 0.96603 0.98022 0.98142 1.21090 0.95107 0.94720 0.87591 1.44215 1.02565 1.80867 1.05493 1.19481 0.83526 1.13014 1.22941 0.91868 1.25952 1.01588 0.95360 1.01764 1.70158 1.35561 1.18669 1.33866 0.85265 0.80611 0.76266 0.78281 1.21163 1.22334 1.19246 1.20506 0.90590 0.92565 0.90703 1.22046 0.97920 0.99049 0.96637 1.21872 0.98029 0.98928 0.96394 1.21661 0.94827 0.85799 0.98111 1.68036 1.08702 1.33226 1.12857 0.88395 0.91185 0.86428 0.78189 0.76154 0.89915 0.83716 0.92657 0.89168 0.90398 0.92170 0.93391 0.96817 0.94288 0.93858 0.98522 0.92773 0.92622 0.92920 0.91752 0.90634 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.22 71.24 0.73 -0.09 16 2 C 0.15 2.21 6.82 42.66 0.29 2.51 16 3 C -0.18 -1.31 9.87 22.54 0.22 -1.08 16 4 C 0.14 1.25 11.30 84.78 0.96 2.21 16 5 N -0.49 -9.16 6.30 -189.10 -1.19 -10.35 16 6 C 0.27 7.00 7.35 137.68 1.01 8.01 16 7 C 0.57 18.38 7.70 86.99 0.67 19.05 16 8 O -0.56 -22.13 16.33 -3.63 -0.06 -22.19 16 9 N -0.58 -16.38 2.97 -820.66 -2.43 -18.82 16 10 C 0.08 1.89 5.41 86.51 0.47 2.36 16 11 C -0.12 -2.86 4.92 30.82 0.15 -2.71 16 12 C -0.04 -1.32 0.51 -52.13 -0.03 -1.35 16 13 C -0.11 -3.46 4.15 30.67 0.13 -3.33 16 14 C 0.14 5.76 6.04 86.36 0.52 6.29 16 15 N -0.61 -30.66 2.98 -699.11 -2.08 -32.74 16 16 C -0.26 -14.39 9.56 84.03 0.80 -13.59 16 17 H 0.06 3.42 7.85 -2.91 -0.02 3.40 16 18 C -0.05 -2.92 5.04 84.86 0.43 -2.49 16 19 N -0.94 -56.59 11.16 21.65 0.24 -56.35 16 20 Si 0.97 45.56 29.57 68.60 2.03 47.59 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C 0.18 8.91 4.77 86.36 0.41 9.32 16 25 C -0.12 -4.42 4.90 30.67 0.15 -4.27 16 26 C -0.11 -3.79 4.15 30.67 0.13 -3.66 16 27 C 0.12 3.58 5.97 86.36 0.52 4.10 16 28 N -0.51 -12.96 10.10 -177.24 -1.79 -14.75 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.12 0.08 8.10 -2.39 -0.02 0.06 16 32 H 0.20 -0.52 8.06 -2.91 -0.02 -0.55 16 33 H 0.22 -0.04 8.06 -2.91 -0.02 -0.06 16 34 H 0.08 1.73 6.66 -2.39 -0.02 1.71 16 35 H 0.15 2.92 4.13 -53.37 -0.22 2.70 16 36 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.08 2.10 4.98 -2.39 -0.01 2.09 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 41 H 0.01 0.59 6.74 -2.39 -0.02 0.57 16 42 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 43 H 0.04 2.43 6.22 -2.39 -0.01 2.41 16 44 H 0.00 -0.17 6.67 -2.39 -0.02 -0.19 16 45 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.06 2.50 4.99 -2.39 -0.01 2.49 16 49 H 0.08 2.50 7.00 -2.39 -0.02 2.48 16 50 H 0.08 2.41 6.74 -2.39 -0.02 2.39 16 Total: -1.00 -78.97 376.96 3.02 -75.95 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.75 Total: 10.39 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 7.56 Total: 21.27 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -7.26 Total: -133.01 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -78.97 3.02 -75.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957542074.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.770 kcal (2) G-P(sol) polarization free energy of solvation -78.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds