Wall clock time and date at job start Wed Apr 1 2020 03:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35374 * 126.39022 * 2 1 4 4 C 1.41500 * 105.50260 * 180.08618 * 3 2 1 5 5 C 1.47713 * 126.51697 * 179.90272 * 4 3 2 6 6 O 1.21568 * 119.99574 * 359.70979 * 5 4 3 7 7 N 1.34779 * 119.99978 * 179.71061 * 5 4 3 8 8 C 1.46503 * 119.99881 * 180.02562 * 7 5 4 9 9 H 1.09000 * 115.51553 * 350.40893 * 8 7 5 10 10 C 1.52992 * 117.44042 * 204.99806 * 8 7 5 11 11 H 1.09005 * 119.54239 * 5.75744 * 10 8 7 12 12 C 1.54387 * 118.12137 * 160.85033 * 10 8 7 13 13 N 1.48148 * 104.61813 * 87.19401 * 12 10 8 14 14 C 1.36934 * 127.84111 * 140.39770 * 13 12 10 15 15 H 1.07994 * 119.99987 * 195.57798 * 14 13 12 16 16 C 1.38815 * 120.00123 * 15.57285 * 14 13 12 17 17 N 1.31629 * 119.99956 * 9.10567 * 16 14 13 18 18 Si 1.86796 * 120.00059 * 189.10230 * 16 14 13 19 19 H 1.48496 * 109.47018 * 60.00415 * 18 16 14 20 20 H 1.48509 * 109.47077 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47338 * 300.00152 * 18 16 14 22 22 C 1.48141 * 104.32084 * 320.41131 * 13 12 10 23 23 C 1.52997 * 117.40814 * 135.77229 * 8 7 5 24 24 H 1.09002 * 119.53704 * 355.89458 * 23 8 7 25 25 N 1.31811 * 106.96330 * 359.63326 * 4 3 2 26 26 N 1.28459 * 110.07416 * 0.23071 * 25 4 3 27 27 C 1.46504 * 124.88450 * 179.97438 * 26 25 4 28 28 H 1.08996 * 109.47570 * 180.02562 * 27 26 25 29 29 C 1.53000 * 109.47377 * 300.02791 * 27 26 25 30 30 C 1.52999 * 109.46912 * 60.02744 * 27 26 25 31 31 C 1.52997 * 117.50293 * 128.74495 * 30 27 26 32 32 C 1.53004 * 117.50089 * 60.08470 * 30 27 26 33 33 H 1.08993 * 109.47363 * 270.32643 * 1 2 3 34 34 H 1.09008 * 109.46597 * 30.32553 * 1 2 3 35 35 H 1.08996 * 109.47574 * 150.31942 * 1 2 3 36 36 H 1.07995 * 127.24555 * 359.96649 * 3 2 1 37 37 H 0.97003 * 120.00053 * 359.97438 * 7 5 4 38 38 H 1.09008 * 110.40547 * 205.97543 * 12 10 8 39 39 H 1.09000 * 110.40854 * 328.40184 * 12 10 8 40 40 H 0.97001 * 119.99692 * 180.02562 * 17 16 14 41 41 H 1.09001 * 110.41058 * 280.80669 * 22 13 12 42 42 H 1.09001 * 110.40652 * 158.37272 * 22 13 12 43 43 H 1.08998 * 109.47115 * 179.97438 * 29 27 26 44 44 H 1.08999 * 109.46832 * 299.99873 * 29 27 26 45 45 H 1.09001 * 109.47330 * 59.99730 * 29 27 26 46 46 H 1.09003 * 115.55061 * 274.41338 * 30 27 26 47 47 H 1.09005 * 117.49508 * 0.02562 * 31 30 27 48 48 H 1.09000 * 117.50310 * 145.01600 * 31 30 27 49 49 H 1.09004 * 117.49794 * 214.97781 * 32 30 27 50 50 H 1.08994 * 117.49304 * 359.97438 * 32 30 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3101 1.0898 0.0000 4 6 3.6321 0.5853 -0.0021 5 6 4.8765 1.3810 -0.0049 6 8 4.8214 2.5954 -0.0109 7 7 6.0731 0.7607 -0.0007 8 6 7.3073 1.5499 -0.0029 9 1 7.1806 2.6192 -0.1718 10 6 8.5649 0.8904 -0.5723 11 1 8.4921 -0.0918 -1.0395 12 6 9.7339 1.8025 -1.0024 13 7 10.5319 1.9942 0.2309 14 6 11.8954 2.0275 0.3525 15 1 12.3536 1.9228 1.3249 16 6 12.6888 2.1959 -0.7740 17 7 12.1359 2.5018 -1.9287 18 14 14.5412 1.9884 -0.6513 19 1 14.8558 0.6112 -0.1936 20 1 15.1546 2.2199 -1.9839 21 1 15.0859 2.9698 0.3210 22 6 9.5201 2.1412 1.3029 23 6 8.4240 1.1137 0.9477 24 1 8.2509 0.2867 1.6364 25 7 3.5419 -0.7297 0.0050 26 7 2.3080 -1.0871 0.0062 27 6 1.8375 -2.4745 0.0129 28 1 0.7476 -2.4886 0.0121 29 6 2.3578 -3.1955 -1.2322 30 6 2.3557 -3.1827 1.2662 31 6 1.3354 -3.9268 2.1301 32 6 1.9413 -2.6105 2.6233 33 1 -0.3634 0.0059 1.0276 34 1 -0.3633 0.8871 -0.5189 35 1 -0.3634 -0.8928 -0.5088 36 1 2.0058 2.1260 -0.0005 37 1 6.1170 -0.2084 0.0045 38 1 10.3335 1.3149 -1.7712 39 1 9.3565 2.7592 -1.3635 40 1 12.6903 2.6190 -2.7160 41 1 9.1092 3.1508 1.3019 42 1 9.9583 1.9092 2.2736 43 1 2.0080 -4.2278 -1.2270 44 1 1.9886 -2.6909 -2.1251 45 1 3.4477 -3.1815 -1.2314 46 1 3.3543 -3.6119 1.1847 47 1 0.2950 -3.9121 1.8052 48 1 1.6629 -4.8453 2.6171 49 1 2.6672 -2.6636 3.4348 50 1 1.2999 -1.7292 2.6232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960714987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:27 Heat of formation + Delta-G solvation = 127.193124 kcal Electronic energy + Delta-G solvation = -29561.430755 eV Core-core repulsion = 25593.129624 eV Total energy + Delta-G solvation = -3968.301132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.93893 -39.56232 -38.43223 -37.97375 -34.39354 -34.02635 -33.08725 -32.43971 -30.50864 -29.93337 -27.31620 -27.08309 -25.93033 -25.03132 -23.64177 -22.90073 -21.66888 -21.28530 -20.71292 -20.26983 -19.28487 -19.12648 -17.51286 -16.88089 -16.71002 -16.29873 -16.02187 -15.69188 -15.23253 -14.67260 -14.43635 -14.25457 -14.14817 -13.66130 -13.50633 -13.38934 -13.20408 -13.16116 -12.87130 -12.68112 -12.64279 -12.28970 -12.12018 -12.10362 -11.72692 -11.46689 -11.44784 -10.95885 -10.94534 -10.89968 -10.78199 -10.76997 -10.33648 -10.17756 -10.09630 -9.94108 -9.68069 -9.26134 -9.11891 -9.07085 -8.67553 -8.22238 -6.81828 -5.75173 -3.09247 1.52645 1.95757 2.07328 3.20646 3.33387 3.42386 3.46203 3.47563 3.48418 3.71697 4.16934 4.24541 4.28852 4.41536 4.43295 4.49219 4.51728 4.59879 4.66479 4.82971 5.04797 5.07983 5.09772 5.18070 5.25530 5.34572 5.38093 5.39381 5.44173 5.46835 5.50076 5.53515 5.57867 5.63318 5.69510 5.74746 5.90300 5.98445 6.22689 6.27615 6.33722 6.58994 6.60737 6.76121 6.91260 6.97481 7.41165 7.58056 7.61303 7.75748 7.89019 8.25351 8.39122 9.15391 9.78140 10.55833 11.39205 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018749 B = 0.002041 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.049165 B =13717.701720 C =14300.868875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.003 3.997 3 C -0.176 4.176 4 C -0.013 4.013 5 C 0.606 3.394 6 O -0.533 6.533 7 N -0.684 5.684 8 C 0.096 3.904 9 H 0.133 0.867 10 C -0.179 4.179 11 H 0.103 0.897 12 C 0.185 3.815 13 N -0.593 5.593 14 C -0.226 4.226 15 H 0.076 0.924 16 C -0.006 4.006 17 N -0.915 5.915 18 Si 0.914 3.086 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.156 3.844 23 C -0.182 4.182 24 H 0.102 0.898 25 N -0.251 5.251 26 N -0.270 5.270 27 C 0.177 3.823 28 H 0.107 0.893 29 C -0.160 4.160 30 C -0.168 4.168 31 C -0.166 4.166 32 C -0.168 4.168 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.160 0.840 37 H 0.404 0.596 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.255 0.745 41 H 0.028 0.972 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.118 0.882 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.814 -14.140 4.538 32.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C -0.204 4.204 4 C -0.173 4.173 5 C 0.390 3.610 6 O -0.407 6.407 7 N -0.332 5.332 8 C -0.009 4.009 9 H 0.150 0.850 10 C -0.200 4.200 11 H 0.121 0.879 12 C 0.059 3.941 13 N -0.317 5.317 14 C -0.354 4.354 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.562 5.562 18 Si 0.744 3.256 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.029 3.971 23 C -0.204 4.204 24 H 0.120 0.880 25 N -0.087 5.087 26 N -0.059 5.059 27 C 0.077 3.923 28 H 0.125 0.875 29 C -0.218 4.218 30 C -0.187 4.187 31 C -0.204 4.204 32 C -0.206 4.206 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.178 0.822 37 H 0.239 0.761 38 H 0.109 0.891 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.136 0.864 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.978 -14.294 4.384 31.722 hybrid contribution 0.484 -0.071 0.046 0.491 sum -27.494 -14.364 4.430 31.335 Atomic orbital electron populations 1.20339 0.86969 1.03718 1.03118 1.21354 0.95276 0.86785 1.08663 1.21493 0.90555 0.99466 1.08904 1.21890 0.95031 0.89730 1.10620 1.16844 0.81469 0.86412 0.76234 1.90793 1.86676 1.12923 1.50309 1.45215 1.04505 1.10155 1.73352 1.21862 0.78961 0.96368 1.03740 0.84971 1.24641 0.96425 1.02071 0.96881 0.87923 1.21066 0.87617 0.94654 0.90736 1.45169 1.00893 1.83367 1.02238 1.18945 0.79288 1.43085 0.94124 0.90597 1.24906 0.98228 1.01005 0.96206 1.69895 1.34168 1.52401 0.99688 0.86182 0.84781 0.77995 0.76689 1.21135 1.21569 1.20987 1.21118 0.88446 0.94405 0.93103 1.24362 0.99041 1.03159 0.93798 0.87979 1.73451 1.02027 1.14586 1.18611 1.45585 1.02695 1.06679 1.50980 1.21153 0.99026 0.76077 0.96065 0.87487 1.22120 1.03582 1.00621 0.95474 1.22576 1.00934 1.04405 0.90780 1.23052 0.97947 0.96531 1.02870 1.22920 1.03676 0.97164 0.96796 0.90522 0.89479 0.91439 0.82214 0.76137 0.89076 0.95566 0.93504 0.95387 0.93022 0.90069 0.91656 0.90469 0.86353 0.88480 0.88030 0.88224 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 9.92 36.00 0.36 -0.06 16 2 C 0.00 0.03 6.92 -82.21 -0.57 -0.54 16 3 C -0.18 -2.12 10.73 -39.36 -0.42 -2.55 16 4 C -0.01 -0.18 7.13 -82.76 -0.59 -0.77 16 5 C 0.61 10.20 7.82 -12.39 -0.10 10.11 16 6 O -0.53 -10.62 16.49 5.31 0.09 -10.54 16 7 N -0.68 -10.92 5.56 -54.79 -0.30 -11.23 16 8 C 0.10 1.77 5.98 -67.93 -0.41 1.37 16 9 H 0.13 2.69 7.40 -51.93 -0.38 2.30 16 10 C -0.18 -3.56 7.05 -89.23 -0.63 -4.19 16 11 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 12 C 0.19 4.60 5.70 -2.41 -0.01 4.59 16 13 N -0.59 -15.64 3.38 -168.86 -0.57 -16.21 16 14 C -0.23 -6.42 10.35 -15.06 -0.16 -6.58 16 15 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 16 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 17 N -0.92 -27.26 10.87 55.49 0.60 -26.65 16 18 Si 0.91 22.23 29.56 -169.99 -5.03 17.21 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.16 3.44 7.04 -2.41 -0.02 3.42 16 23 C -0.18 -3.46 7.06 -89.22 -0.63 -4.09 16 24 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 25 N -0.25 -3.10 11.33 33.42 0.38 -2.72 16 26 N -0.27 -2.56 2.92 -50.66 -0.15 -2.70 16 27 C 0.18 1.11 3.13 -67.93 -0.21 0.89 16 28 H 0.11 0.43 6.30 -51.93 -0.33 0.10 16 29 C -0.16 -0.93 9.35 37.16 0.35 -0.58 16 30 C -0.17 -1.05 5.20 -90.62 -0.47 -1.52 16 31 C -0.17 -0.74 10.18 -26.70 -0.27 -1.01 16 32 C -0.17 -1.10 10.13 -26.69 -0.27 -1.37 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.07 0.23 7.02 -51.93 -0.36 -0.14 16 36 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.40 5.69 8.55 -40.82 -0.35 5.34 16 38 H 0.09 2.50 6.51 -51.92 -0.34 2.16 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.12 0.83 8.11 -51.93 -0.42 0.41 16 47 H 0.10 0.30 8.05 -51.93 -0.42 -0.12 16 48 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 412.54 15.07 6.22 6.22 Total: -1.00 -33.97 412.54 -10.98 -44.94 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.07 Total: 4.84 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -4.15 Total: -3.16 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.04 Total: -59.52 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.97 -10.98 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960714987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.136 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds