Wall clock time and date at job start Wed Apr 1 2020 03:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35374 * 126.39022 * 2 1 4 4 C 1.41500 * 105.50260 * 180.08618 * 3 2 1 5 5 C 1.47713 * 126.51697 * 179.90272 * 4 3 2 6 6 O 1.21568 * 119.99574 * 359.70979 * 5 4 3 7 7 N 1.34779 * 119.99978 * 179.71061 * 5 4 3 8 8 C 1.46503 * 119.99881 * 180.02562 * 7 5 4 9 9 H 1.09000 * 115.51553 * 350.40893 * 8 7 5 10 10 C 1.52992 * 117.44042 * 204.99806 * 8 7 5 11 11 H 1.09005 * 119.54239 * 5.75744 * 10 8 7 12 12 C 1.54387 * 118.12137 * 160.85033 * 10 8 7 13 13 N 1.48148 * 104.61813 * 87.19401 * 12 10 8 14 14 C 1.36934 * 127.84111 * 140.39770 * 13 12 10 15 15 H 1.07994 * 119.99987 * 195.57798 * 14 13 12 16 16 C 1.38815 * 120.00123 * 15.57285 * 14 13 12 17 17 N 1.31629 * 119.99956 * 9.10567 * 16 14 13 18 18 Si 1.86796 * 120.00059 * 189.10230 * 16 14 13 19 19 H 1.48496 * 109.47018 * 60.00415 * 18 16 14 20 20 H 1.48509 * 109.47077 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47338 * 300.00152 * 18 16 14 22 22 C 1.48141 * 104.32084 * 320.41131 * 13 12 10 23 23 C 1.52997 * 117.40814 * 135.77229 * 8 7 5 24 24 H 1.09002 * 119.53704 * 355.89458 * 23 8 7 25 25 N 1.31811 * 106.96330 * 359.63326 * 4 3 2 26 26 N 1.28459 * 110.07416 * 0.23071 * 25 4 3 27 27 C 1.46504 * 124.88450 * 179.97438 * 26 25 4 28 28 H 1.08996 * 109.47570 * 180.02562 * 27 26 25 29 29 C 1.53000 * 109.47377 * 300.02791 * 27 26 25 30 30 C 1.52999 * 109.46912 * 60.02744 * 27 26 25 31 31 C 1.52997 * 117.50293 * 128.74495 * 30 27 26 32 32 C 1.53004 * 117.50089 * 60.08470 * 30 27 26 33 33 H 1.08993 * 109.47363 * 270.32643 * 1 2 3 34 34 H 1.09008 * 109.46597 * 30.32553 * 1 2 3 35 35 H 1.08996 * 109.47574 * 150.31942 * 1 2 3 36 36 H 1.07995 * 127.24555 * 359.96649 * 3 2 1 37 37 H 0.97003 * 120.00053 * 359.97438 * 7 5 4 38 38 H 1.09008 * 110.40547 * 205.97543 * 12 10 8 39 39 H 1.09000 * 110.40854 * 328.40184 * 12 10 8 40 40 H 0.97001 * 119.99692 * 180.02562 * 17 16 14 41 41 H 1.09001 * 110.41058 * 280.80669 * 22 13 12 42 42 H 1.09001 * 110.40652 * 158.37272 * 22 13 12 43 43 H 1.08998 * 109.47115 * 179.97438 * 29 27 26 44 44 H 1.08999 * 109.46832 * 299.99873 * 29 27 26 45 45 H 1.09001 * 109.47330 * 59.99730 * 29 27 26 46 46 H 1.09003 * 115.55061 * 274.41338 * 30 27 26 47 47 H 1.09005 * 117.49508 * 0.02562 * 31 30 27 48 48 H 1.09000 * 117.50310 * 145.01600 * 31 30 27 49 49 H 1.09004 * 117.49794 * 214.97781 * 32 30 27 50 50 H 1.08994 * 117.49304 * 359.97438 * 32 30 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3101 1.0898 0.0000 4 6 3.6321 0.5853 -0.0021 5 6 4.8765 1.3810 -0.0049 6 8 4.8214 2.5954 -0.0109 7 7 6.0731 0.7607 -0.0007 8 6 7.3073 1.5499 -0.0029 9 1 7.1806 2.6192 -0.1718 10 6 8.5649 0.8904 -0.5723 11 1 8.4921 -0.0918 -1.0395 12 6 9.7339 1.8025 -1.0024 13 7 10.5319 1.9942 0.2309 14 6 11.8954 2.0275 0.3525 15 1 12.3536 1.9228 1.3249 16 6 12.6888 2.1959 -0.7740 17 7 12.1359 2.5018 -1.9287 18 14 14.5412 1.9884 -0.6513 19 1 14.8558 0.6112 -0.1936 20 1 15.1546 2.2199 -1.9839 21 1 15.0859 2.9698 0.3210 22 6 9.5201 2.1412 1.3029 23 6 8.4240 1.1137 0.9477 24 1 8.2509 0.2867 1.6364 25 7 3.5419 -0.7297 0.0050 26 7 2.3080 -1.0871 0.0062 27 6 1.8375 -2.4745 0.0129 28 1 0.7476 -2.4886 0.0121 29 6 2.3578 -3.1955 -1.2322 30 6 2.3557 -3.1827 1.2662 31 6 1.3354 -3.9268 2.1301 32 6 1.9413 -2.6105 2.6233 33 1 -0.3634 0.0059 1.0276 34 1 -0.3633 0.8871 -0.5189 35 1 -0.3634 -0.8928 -0.5088 36 1 2.0058 2.1260 -0.0005 37 1 6.1170 -0.2084 0.0045 38 1 10.3335 1.3149 -1.7712 39 1 9.3565 2.7592 -1.3635 40 1 12.6903 2.6190 -2.7160 41 1 9.1092 3.1508 1.3019 42 1 9.9583 1.9092 2.2736 43 1 2.0080 -4.2278 -1.2270 44 1 1.9886 -2.6909 -2.1251 45 1 3.4477 -3.1815 -1.2314 46 1 3.3543 -3.6119 1.1847 47 1 0.2950 -3.9121 1.8052 48 1 1.6629 -4.8453 2.6171 49 1 2.6672 -2.6636 3.4348 50 1 1.2999 -1.7292 2.6232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960714987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:26 Heat of formation + Delta-G solvation = 106.615057 kcal Electronic energy + Delta-G solvation = -29562.323087 eV Core-core repulsion = 25593.129624 eV Total energy + Delta-G solvation = -3969.193464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.76314 -41.05875 -39.73428 -38.76290 -36.11868 -34.75317 -34.30567 -33.60542 -32.15982 -30.92119 -28.95599 -28.01765 -27.65055 -26.06912 -24.50352 -23.31200 -23.23737 -22.08845 -21.93954 -21.67012 -20.93435 -20.20308 -18.88318 -18.33275 -17.69682 -17.50634 -17.12707 -16.72851 -16.23305 -15.95492 -15.71891 -15.49140 -15.35489 -14.92274 -14.84856 -14.65228 -14.07437 -13.87446 -13.80035 -13.63940 -13.39803 -13.36634 -13.28031 -13.17102 -12.91488 -12.76224 -12.68360 -12.46391 -12.21145 -12.18193 -12.07517 -11.89291 -11.75593 -11.69614 -11.43099 -11.31949 -11.20452 -10.86287 -10.71622 -10.16680 -9.86652 -9.72087 -8.93760 -7.91871 -5.29271 0.49249 1.11258 1.38721 1.46646 1.50451 1.57124 1.92521 2.24644 2.48640 2.84609 2.86281 3.15207 3.28255 3.49246 3.58723 3.71747 3.74885 3.80556 3.87868 3.88476 3.99480 4.05238 4.11104 4.16075 4.33359 4.37083 4.44281 4.50564 4.63658 4.69566 4.72484 4.76702 4.78798 4.83844 4.87045 4.96633 4.97682 5.02400 5.06099 5.11590 5.19587 5.24199 5.24704 5.34303 5.40546 5.43337 5.50017 5.62271 5.91750 6.15282 6.37850 6.91902 6.99030 7.10957 7.65981 8.44917 9.22071 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018749 B = 0.002041 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.049165 B =13717.701720 C =14300.868875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.021 3.979 3 C -0.203 4.203 4 C -0.043 4.043 5 C 0.605 3.395 6 O -0.572 6.572 7 N -0.673 5.673 8 C 0.114 3.886 9 H 0.110 0.890 10 C -0.177 4.177 11 H 0.124 0.876 12 C 0.190 3.810 13 N -0.616 5.616 14 C -0.243 4.243 15 H 0.084 0.916 16 C -0.064 4.064 17 N -0.949 5.949 18 Si 0.985 3.015 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.275 1.275 22 C 0.150 3.850 23 C -0.164 4.164 24 H 0.132 0.868 25 N -0.258 5.258 26 N -0.260 5.260 27 C 0.170 3.830 28 H 0.141 0.859 29 C -0.158 4.158 30 C -0.178 4.178 31 C -0.139 4.139 32 C -0.186 4.186 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.158 0.842 37 H 0.416 0.584 38 H 0.061 0.939 39 H -0.002 1.002 40 H 0.251 0.749 41 H 0.021 0.979 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.105 0.895 47 H 0.120 0.880 48 H 0.108 0.892 49 H 0.087 0.913 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.411 -16.952 5.594 36.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.231 4.231 4 C -0.201 4.201 5 C 0.392 3.608 6 O -0.450 6.450 7 N -0.322 5.322 8 C 0.008 3.992 9 H 0.128 0.872 10 C -0.198 4.198 11 H 0.142 0.858 12 C 0.064 3.936 13 N -0.340 5.340 14 C -0.371 4.371 15 H 0.101 0.899 16 C -0.258 4.258 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.200 1.200 22 C 0.024 3.976 23 C -0.185 4.185 24 H 0.149 0.851 25 N -0.095 5.095 26 N -0.050 5.050 27 C 0.072 3.928 28 H 0.158 0.842 29 C -0.215 4.215 30 C -0.197 4.197 31 C -0.177 4.177 32 C -0.224 4.224 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.176 0.824 37 H 0.253 0.747 38 H 0.079 0.921 39 H 0.016 0.984 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.084 0.916 43 H 0.125 0.875 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.123 0.877 47 H 0.138 0.862 48 H 0.126 0.874 49 H 0.106 0.894 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -30.598 -17.146 5.469 35.498 hybrid contribution 1.171 0.777 -0.254 1.428 sum -29.427 -16.369 5.215 34.075 Atomic orbital electron populations 1.20552 0.83463 1.05444 1.04702 1.21919 0.97115 0.85574 1.05745 1.21661 0.90298 1.00521 1.10618 1.21553 0.94415 0.90568 1.13613 1.17247 0.82292 0.86202 0.75050 1.90761 1.87323 1.14731 1.52152 1.45034 1.03498 1.10476 1.73165 1.21446 0.79581 0.95521 1.02694 0.87187 1.24336 0.95780 1.01960 0.97706 0.85816 1.20792 0.88773 0.93978 0.90037 1.45466 1.01192 1.83708 1.03643 1.19371 0.80585 1.42581 0.94569 0.89854 1.25812 1.02969 1.01118 0.95865 1.70104 1.35602 1.53667 1.00250 0.85072 0.78975 0.78331 0.76437 1.20060 1.21976 1.20040 1.21244 0.88566 0.95001 0.92752 1.24276 0.98036 1.02749 0.93438 0.85050 1.73384 1.03829 1.13545 1.18777 1.46027 1.01900 1.08141 1.48954 1.21586 1.00798 0.74219 0.96236 0.84193 1.22119 1.02211 1.02107 0.95104 1.22535 1.01234 1.05232 0.90667 1.23161 0.98521 0.95475 1.00513 1.22917 1.04205 0.98599 0.96655 0.88828 0.88634 0.88899 0.82398 0.74731 0.92074 0.98433 0.94039 0.96123 0.91610 0.87521 0.91837 0.92619 0.87693 0.86178 0.87350 0.89435 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 9.92 71.23 0.71 0.19 16 2 C 0.02 0.34 6.92 41.40 0.29 0.63 16 3 C -0.20 -4.83 10.73 22.41 0.24 -4.59 16 4 C -0.04 -1.24 7.13 42.46 0.30 -0.93 16 5 C 0.61 20.91 7.82 86.75 0.68 21.59 16 6 O -0.57 -23.83 16.49 -3.93 -0.06 -23.90 16 7 N -0.67 -21.53 5.56 -445.54 -2.48 -24.00 16 8 C 0.11 4.26 5.98 44.99 0.27 4.53 16 9 H 0.11 4.69 7.40 -2.39 -0.02 4.67 16 10 C -0.18 -7.10 7.05 -9.89 -0.07 -7.17 16 11 H 0.12 4.46 8.14 -2.38 -0.02 4.44 16 12 C 0.19 9.88 5.70 86.53 0.49 10.37 16 13 N -0.62 -33.27 3.38 -688.15 -2.33 -35.60 16 14 C -0.24 -13.97 10.35 84.03 0.87 -13.10 16 15 H 0.08 4.55 7.84 -2.91 -0.02 4.52 16 16 C -0.06 -3.72 5.40 84.86 0.46 -3.26 16 17 N -0.95 -58.52 10.87 21.65 0.24 -58.28 16 18 Si 0.98 46.29 29.56 68.60 2.03 48.32 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 C 0.15 6.65 7.04 86.54 0.61 7.26 16 23 C -0.16 -6.11 7.06 -9.89 -0.07 -6.18 16 24 H 0.13 4.20 8.14 -2.39 -0.02 4.18 16 25 N -0.26 -6.19 11.33 -48.17 -0.55 -6.73 16 26 N -0.26 -4.42 2.92 -314.19 -0.92 -5.33 16 27 C 0.17 1.60 3.13 44.99 0.14 1.74 16 28 H 0.14 0.42 6.30 -2.39 -0.02 0.40 16 29 C -0.16 -1.42 9.35 71.98 0.67 -0.75 16 30 C -0.18 -1.79 5.20 -10.79 -0.06 -1.84 16 31 C -0.14 -0.74 10.18 30.62 0.31 -0.43 16 32 C -0.19 -2.06 10.13 30.62 0.31 -1.75 16 33 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.09 0.14 7.02 -2.39 -0.02 0.13 16 36 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.42 11.42 8.55 -92.71 -0.79 10.62 16 38 H 0.06 3.52 6.51 -2.38 -0.02 3.50 16 39 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.10 1.34 8.11 -2.39 -0.02 1.32 16 47 H 0.12 0.13 8.05 -2.38 -0.02 0.11 16 48 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 50 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -77.65 412.54 2.24 -75.40 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.15 Total: 23.82 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.15 Total: 6.30 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -6.03 Total: -129.95 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -77.65 2.24 -75.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960714987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.020 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds