Wall clock time and date at job start Wed Apr 1 2020 04:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38773 * 119.90404 * 2 1 4 4 N 1.31770 * 120.12213 * 179.97438 * 3 2 1 5 5 C 1.33034 * 119.92949 * 0.02562 * 4 3 2 6 6 C 1.48145 * 120.09680 * 180.02562 * 5 4 3 7 7 O 1.21522 * 120.00127 * 202.29576 * 6 5 4 8 8 N 1.34773 * 120.00101 * 22.29489 * 6 5 4 9 9 C 1.46930 * 120.63221 * 359.51686 * 8 6 5 10 10 C 1.53191 * 108.77325 * 126.40923 * 9 8 6 11 11 C 1.53040 * 109.31036 * 54.64006 * 10 9 8 12 12 C 1.53041 * 109.53947 * 298.63035 * 11 10 9 13 13 H 1.08999 * 109.52098 * 301.39509 * 12 11 10 14 14 C 1.53000 * 109.49733 * 181.32004 * 12 11 10 15 15 H 1.09005 * 110.91665 * 302.60745 * 14 12 11 16 16 C 1.55156 * 111.00658 * 66.51175 * 14 12 11 17 17 C 1.54325 * 102.94200 * 153.57515 * 16 14 12 18 18 N 1.47285 * 107.30731 * 337.81924 * 17 16 14 19 19 C 1.36937 * 125.79400 * 178.92979 * 18 17 16 20 20 H 1.08004 * 120.00002 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99972 * 359.97438 * 19 18 17 22 22 N 1.31618 * 120.00091 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47020 * 90.00039 * 23 21 19 25 25 H 1.48497 * 109.47218 * 210.00276 * 23 21 19 26 26 H 1.48506 * 109.47139 * 330.00369 * 23 21 19 27 27 C 1.47426 * 108.55957 * 358.91964 * 18 17 16 28 28 C 1.46929 * 120.63120 * 179.53888 * 8 6 5 29 29 C 1.39407 * 119.80610 * 0.27813 * 5 4 3 30 30 N 1.32106 * 119.87397 * 359.40987 * 29 5 4 31 31 H 1.08999 * 109.47139 * 90.00549 * 1 2 3 32 32 H 1.08995 * 109.47080 * 210.00503 * 1 2 3 33 33 H 1.09001 * 109.47123 * 330.00084 * 1 2 3 34 34 H 1.07995 * 119.94049 * 359.97238 * 3 2 1 35 35 H 1.08993 * 109.58820 * 246.19990 * 9 8 6 36 36 H 1.08999 * 109.57997 * 6.48566 * 9 8 6 37 37 H 1.09000 * 109.49653 * 174.58246 * 10 9 8 38 38 H 1.08998 * 109.50623 * 294.68788 * 10 9 8 39 39 H 1.09007 * 109.46230 * 178.60990 * 11 10 9 40 40 H 1.09000 * 109.46231 * 58.65250 * 11 10 9 41 41 H 1.08997 * 110.71677 * 271.93904 * 16 14 12 42 42 H 1.08994 * 110.72197 * 35.21242 * 16 14 12 43 43 H 1.09004 * 109.88211 * 97.22597 * 17 16 14 44 44 H 1.08998 * 109.87985 * 218.23650 * 17 16 14 45 45 H 0.97000 * 120.00212 * 179.97438 * 22 21 19 46 46 H 1.08999 * 110.36985 * 265.26677 * 27 18 17 47 47 H 1.09001 * 110.36371 * 143.04655 * 27 18 17 48 48 H 1.08999 * 109.58755 * 113.79611 * 28 8 6 49 49 H 1.09000 * 109.58540 * 353.37314 * 28 8 6 50 50 H 1.07996 * 120.06007 * 179.69795 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2030 0.0000 4 7 3.5166 1.2080 0.0005 5 6 4.1847 0.0576 0.0005 6 6 5.6662 0.0589 0.0017 7 8 6.2750 -0.9141 -0.3976 8 7 6.3387 1.1392 0.4454 9 6 5.6168 2.3272 0.9213 10 6 6.1154 2.6768 2.3270 11 6 7.6373 2.8354 2.2993 12 6 8.2819 1.5145 1.8729 13 1 7.9920 0.7267 2.5681 14 6 9.8045 1.6645 1.8773 15 1 10.1174 2.4775 1.2220 16 6 10.3385 1.8752 3.3187 17 6 11.7803 1.3312 3.2362 18 7 11.8350 0.4070 2.0907 19 6 12.9439 -0.2728 1.6623 20 1 12.8777 -0.9300 0.8077 21 6 14.1529 -0.1171 2.3262 22 7 14.2334 0.6834 3.3679 23 14 15.6657 -1.0439 1.7413 24 1 16.3934 -0.2223 0.7411 25 1 16.5557 -1.3188 2.8979 26 1 15.2506 -2.3273 1.1200 27 6 10.4945 0.3353 1.4812 28 6 7.8079 1.1516 0.4621 29 6 3.4867 -1.1491 -0.0059 30 7 2.1657 -1.1452 -0.0001 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6564 2.1368 -0.0005 35 1 5.8054 3.1634 0.2482 36 1 4.5478 2.1168 0.9523 37 1 5.6582 3.6110 2.6533 38 1 5.8454 1.8783 3.0180 39 1 7.9922 3.1085 3.2931 40 1 7.9081 3.6173 1.5898 41 1 10.3400 2.9338 3.5784 42 1 9.7505 1.3021 4.0355 43 1 12.4787 2.1538 3.0818 44 1 12.0296 0.8010 4.1553 45 1 15.0781 0.7918 3.8321 46 1 9.9406 -0.5137 1.8818 47 1 10.5745 0.2578 0.3969 48 1 8.1752 1.8920 -0.2485 49 1 8.1847 0.1650 0.1926 50 1 4.0250 -2.0854 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961114805.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:45 Heat of formation + Delta-G solvation = 46.012478 kcal Electronic energy + Delta-G solvation = -30294.579192 eV Core-core repulsion = 26322.757803 eV Total energy + Delta-G solvation = -3971.821389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87189 -40.05404 -38.26559 -36.71341 -35.28664 -33.50429 -33.31929 -32.23466 -31.09503 -29.31207 -28.78900 -27.03543 -25.74743 -25.17713 -24.51022 -23.61383 -22.70649 -21.31821 -19.87700 -19.73883 -19.46488 -18.43011 -17.35991 -16.79523 -16.67964 -16.16241 -15.86811 -15.33859 -15.12032 -14.72601 -14.53215 -14.45035 -14.01241 -13.81000 -13.60671 -13.39685 -13.25461 -13.02378 -13.01688 -12.95276 -12.53200 -12.26702 -12.02350 -11.78674 -11.76801 -11.53046 -11.12687 -10.94608 -10.85267 -10.77205 -10.60809 -10.52813 -10.51136 -10.04953 -9.96658 -9.76671 -9.71933 -9.70816 -9.52707 -9.24351 -8.67230 -8.53285 -6.74198 -5.64009 -2.96523 -0.04476 0.51911 2.39888 2.68098 3.22627 3.44938 3.49636 3.49844 3.51984 3.58722 3.88094 4.20156 4.43821 4.55515 4.56743 4.75685 4.88825 4.91495 4.95792 4.98734 5.01512 5.08775 5.25784 5.36818 5.44965 5.52679 5.54991 5.62979 5.72211 5.74415 5.76337 5.82348 5.90675 5.95880 6.03048 6.07760 6.12872 6.31460 6.34021 6.46564 6.52162 6.60764 6.63145 6.67085 6.82071 7.06249 7.11394 7.26575 7.64066 7.70459 7.89665 7.90348 8.33694 9.29905 9.90648 10.57820 11.48063 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.002211 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.811588 B =12661.138771 C =13557.039823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.099 3.901 3 C 0.043 3.957 4 N -0.399 5.399 5 C 0.027 3.973 6 C 0.571 3.429 7 O -0.526 6.526 8 N -0.586 5.586 9 C 0.078 3.922 10 C -0.136 4.136 11 C -0.115 4.115 12 C -0.085 4.085 13 H 0.073 0.927 14 C -0.095 4.095 15 H 0.074 0.926 16 C -0.135 4.135 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.924 5.924 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.140 3.860 28 C 0.113 3.887 29 C 0.117 3.883 30 N -0.441 5.441 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.178 0.822 35 H 0.068 0.932 36 H 0.131 0.869 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.040 0.960 45 H 0.251 0.749 46 H 0.018 0.982 47 H 0.037 0.963 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.015 6.042 -4.421 30.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.042 4.042 3 C -0.119 4.119 4 N -0.117 5.117 5 C -0.113 4.113 6 C 0.356 3.644 7 O -0.402 6.402 8 N -0.317 5.317 9 C -0.044 4.044 10 C -0.174 4.174 11 C -0.153 4.153 12 C -0.105 4.105 13 H 0.091 0.909 14 C -0.115 4.115 15 H 0.093 0.907 16 C -0.174 4.174 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.572 5.572 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.014 3.986 28 C -0.008 4.008 29 C -0.042 4.042 30 N -0.156 5.156 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.195 0.805 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.035 0.965 47 H 0.055 0.945 48 H 0.090 0.910 49 H 0.117 0.883 50 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -29.393 5.462 -4.576 30.244 hybrid contribution 0.965 -0.278 -0.172 1.019 sum -28.428 5.184 -4.748 29.284 Atomic orbital electron populations 1.20775 0.87187 1.04415 1.03911 1.22672 0.98892 0.89672 0.92975 1.23839 0.90524 0.99623 0.97901 1.68407 1.08571 1.27609 1.07075 1.22240 0.95980 0.91028 1.02067 1.17645 0.84841 0.83120 0.78778 1.90843 1.68070 1.33652 1.47643 1.48004 1.07480 1.14942 1.61224 1.22766 1.00055 0.86992 0.94597 1.21967 0.96875 1.01658 0.96894 1.21597 0.94053 0.97425 1.02192 1.21462 0.95468 0.97676 0.95895 0.90865 1.22320 0.91500 0.99464 0.98184 0.90729 1.22878 0.99600 0.99805 0.95096 1.21166 0.89703 0.92995 0.90910 1.44542 1.04498 1.51692 1.32558 1.19079 0.86401 1.19343 1.10389 0.90484 1.24797 0.97769 1.00085 0.98079 1.69970 1.24696 1.40655 1.21847 0.86124 0.82982 0.79281 0.77447 1.21685 1.21750 1.20709 1.21587 0.87198 0.93619 0.96236 1.21884 0.77310 1.04099 0.97554 1.23826 0.89863 0.99253 0.91284 1.68493 1.08258 1.29012 1.09796 0.89452 0.89760 0.89763 0.80540 0.91378 0.85281 0.90924 0.92003 0.91267 0.91801 0.92426 0.92705 0.93764 0.94196 0.93894 0.96471 0.94516 0.91032 0.88343 0.79959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.33 10.19 36.01 0.37 0.03 16 2 C 0.10 0.67 6.79 -82.27 -0.56 0.11 16 3 C 0.04 0.27 10.88 -17.38 -0.19 0.08 16 4 N -0.40 -3.63 6.56 -9.61 -0.06 -3.69 16 5 C 0.03 0.30 6.44 -82.84 -0.53 -0.24 16 6 C 0.57 7.81 7.62 -12.19 -0.09 7.72 16 7 O -0.53 -8.80 15.97 5.35 0.09 -8.71 16 8 N -0.59 -7.38 2.97 -173.77 -0.52 -7.89 16 9 C 0.08 0.77 6.01 -3.71 -0.02 0.75 16 10 C -0.14 -1.29 6.08 -26.61 -0.16 -1.46 16 11 C -0.12 -1.30 5.04 -26.69 -0.13 -1.43 16 12 C -0.09 -1.19 1.85 -90.50 -0.17 -1.35 16 13 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 14 C -0.09 -1.63 2.56 -88.47 -0.23 -1.86 16 15 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.14 -2.53 5.58 -24.90 -0.14 -2.67 16 17 C 0.18 4.41 5.38 -2.92 -0.02 4.39 16 18 N -0.61 -16.07 3.40 -169.85 -0.58 -16.64 16 19 C -0.22 -6.47 10.28 -15.06 -0.15 -6.62 16 20 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 21 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -27.87 10.33 55.49 0.57 -27.30 16 23 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.14 2.99 5.74 -2.52 -0.01 2.98 16 28 C 0.11 1.56 5.40 -3.71 -0.02 1.54 16 29 C 0.12 1.21 10.77 -17.00 -0.18 1.03 16 30 N -0.44 -4.16 10.41 -8.94 -0.09 -4.25 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.08 8.09 -51.93 -0.42 -0.34 16 34 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.13 1.20 3.98 -77.32 -0.31 0.89 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.79 7.46 -51.92 -0.39 0.41 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 42 H 0.05 0.98 8.01 -51.93 -0.42 0.56 16 43 H 0.04 1.21 7.39 -51.93 -0.38 0.83 16 44 H 0.04 1.10 7.52 -51.93 -0.39 0.71 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.02 0.38 8.04 -51.93 -0.42 -0.03 16 47 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.10 1.58 6.42 -51.93 -0.33 1.24 16 50 H 0.18 1.76 7.81 -52.49 -0.41 1.35 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -34.45 391.03 -10.15 -44.60 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -8.08 Total: -2.35 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.34 Total: 2.58 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.68 Total: -59.78 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.45 -10.15 -44.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961114805.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.611 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds