Wall clock time and date at job start Wed Apr 1 2020 04:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38771 * 119.90489 * 2 1 4 4 N 1.31769 * 120.12049 * 179.97438 * 3 2 1 5 5 C 1.33032 * 119.92903 * 0.03969 * 4 3 2 6 6 C 1.48146 * 120.09458 * 180.24995 * 5 4 3 7 7 O 1.21524 * 119.99596 * 159.13638 * 6 5 4 8 8 N 1.34772 * 120.00688 * 339.14751 * 6 5 4 9 9 C 1.46926 * 120.62639 * 0.14430 * 8 6 5 10 10 C 1.52762 * 109.01265 * 233.59073 * 9 8 6 11 11 C 1.53040 * 109.37966 * 305.58907 * 10 9 8 12 12 C 1.53042 * 109.54111 * 61.24025 * 11 10 9 13 13 H 1.09003 * 109.52480 * 58.59671 * 12 11 10 14 14 C 1.52989 * 109.50194 * 178.68498 * 12 11 10 15 15 H 1.08999 * 110.64692 * 62.97858 * 14 12 11 16 16 C 1.55158 * 110.72003 * 299.83623 * 14 12 11 17 17 C 1.54913 * 101.58582 * 206.13735 * 16 14 12 18 18 N 1.47424 * 104.83117 * 37.00620 * 17 16 14 19 19 C 1.36936 * 125.64582 * 155.91168 * 18 17 16 20 20 H 1.07991 * 120.00183 * 5.04584 * 19 18 17 21 21 C 1.38815 * 119.99781 * 185.05448 * 19 18 17 22 22 N 1.31619 * 120.00018 * 354.40404 * 21 19 18 23 23 Si 1.86794 * 119.99883 * 174.41028 * 21 19 18 24 24 H 1.48504 * 109.47276 * 94.99656 * 23 21 19 25 25 H 1.48507 * 109.47211 * 214.99385 * 23 21 19 26 26 H 1.48499 * 109.47544 * 334.99165 * 23 21 19 27 27 C 1.47020 * 108.70374 * 335.87360 * 18 17 16 28 28 C 1.46921 * 120.63623 * 180.43119 * 8 6 5 29 29 C 1.39398 * 119.80693 * 359.97438 * 5 4 3 30 30 N 1.32106 * 119.88034 * 359.97438 * 29 5 4 31 31 H 1.09005 * 109.47037 * 269.98132 * 1 2 3 32 32 H 1.09004 * 109.47084 * 29.98268 * 1 2 3 33 33 H 1.09000 * 109.47174 * 149.98106 * 1 2 3 34 34 H 1.07995 * 119.93986 * 359.97413 * 3 2 1 35 35 H 1.08999 * 109.58784 * 353.42563 * 9 8 6 36 36 H 1.09002 * 109.58493 * 113.84852 * 9 8 6 37 37 H 1.08995 * 109.56778 * 185.55666 * 10 9 8 38 38 H 1.08992 * 109.38652 * 65.51279 * 10 9 8 39 39 H 1.09007 * 109.46400 * 301.22005 * 11 10 9 40 40 H 1.08998 * 109.44892 * 181.25312 * 11 10 9 41 41 H 1.09006 * 111.00242 * 324.21007 * 16 14 12 42 42 H 1.09001 * 111.00920 * 88.02265 * 16 14 12 43 43 H 1.08997 * 110.36625 * 155.84957 * 17 16 14 44 44 H 1.09005 * 110.36266 * 278.17218 * 17 16 14 45 45 H 0.96998 * 119.99963 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.88469 * 241.64417 * 27 18 17 47 47 H 1.08997 * 109.88176 * 120.47553 * 27 18 17 48 48 H 1.09000 * 109.58948 * 246.15310 * 28 8 6 49 49 H 1.09000 * 109.58326 * 6.57715 * 28 8 6 50 50 H 1.07996 * 120.05949 * 180.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2029 0.0000 4 7 3.5166 1.2079 0.0005 5 6 4.1847 0.0575 0.0002 6 6 5.6661 0.0588 0.0064 7 8 6.2729 -0.9252 0.3811 8 7 6.3409 1.1511 -0.4033 9 6 5.6212 2.3494 -0.8560 10 6 6.1271 2.7393 -2.2436 11 6 7.6488 2.8973 -2.2035 12 6 8.2915 1.5653 -1.8098 13 1 8.0055 0.7965 -2.5276 14 6 9.8140 1.7155 -1.8018 15 1 10.1247 2.4418 -1.0508 16 6 10.3329 2.1221 -3.2064 17 6 11.7786 1.5664 -3.1768 18 7 11.6801 0.2975 -2.4327 19 6 12.5481 -0.7567 -2.5343 20 1 13.4363 -0.6682 -3.1422 21 6 12.2862 -1.9392 -1.8561 22 7 11.2645 -2.0114 -1.0295 23 14 13.3838 -3.4280 -2.1166 24 1 14.4252 -3.4665 -1.0586 25 1 12.5645 -4.6649 -2.0498 26 1 14.0343 -3.3367 -3.4484 27 6 10.4960 0.3518 -1.5629 28 6 7.8100 1.1641 -0.4118 29 6 3.4866 -1.1491 -0.0001 30 7 2.1656 -1.1453 0.0004 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6564 2.1367 -0.0004 35 1 4.5530 2.1377 -0.9042 36 1 5.8023 3.1689 -0.1604 37 1 5.6715 3.6819 -2.5468 38 1 5.8610 1.9602 -2.9579 39 1 7.9157 3.6596 -1.4715 40 1 8.0087 3.1972 -3.1877 41 1 9.7471 1.6453 -3.9924 42 1 10.3326 3.2057 -3.3245 43 1 12.1361 1.3850 -4.1904 44 1 12.4410 2.2597 -2.6584 45 1 11.0817 -2.8376 -0.5553 46 1 10.7985 0.2665 -0.5192 47 1 9.8102 -0.4556 -1.8195 48 1 8.1733 1.8850 0.3206 49 1 8.1856 0.1706 -0.1672 50 1 4.0249 -2.0854 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961114806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:48 Heat of formation + Delta-G solvation = 47.996333 kcal Electronic energy + Delta-G solvation = -30716.077483 eV Core-core repulsion = 26744.342121 eV Total energy + Delta-G solvation = -3971.735362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.74107 -39.88315 -38.15526 -36.62798 -35.16976 -33.35238 -33.20205 -32.10037 -31.28879 -29.13857 -28.41910 -27.18786 -25.59486 -25.06447 -24.43644 -23.50176 -22.58474 -21.23843 -19.93487 -19.61502 -19.24022 -18.28908 -17.19356 -16.73728 -16.54453 -16.00881 -15.70287 -15.31884 -15.02181 -14.77421 -14.41743 -14.19499 -13.95451 -13.75413 -13.40206 -13.28956 -13.14136 -12.89451 -12.85737 -12.80866 -12.51403 -12.34801 -12.02502 -11.66763 -11.49709 -11.39391 -11.03418 -10.88188 -10.75944 -10.72343 -10.55330 -10.46689 -10.31272 -10.09445 -9.93502 -9.78398 -9.62783 -9.58383 -9.42413 -9.10095 -8.48961 -8.47997 -6.71548 -5.61091 -2.93889 0.08484 0.63735 2.57932 2.86410 3.37610 3.46567 3.51575 3.54328 3.62482 3.71076 4.00240 4.33345 4.56594 4.58794 4.68698 4.88664 5.01313 5.04584 5.06049 5.10119 5.15179 5.21570 5.38212 5.46819 5.54001 5.57503 5.66966 5.74168 5.75286 5.81687 5.87190 5.95298 6.05279 6.05772 6.14764 6.17695 6.22668 6.37501 6.44183 6.52092 6.63744 6.71057 6.72882 6.75939 6.80616 7.06168 7.25061 7.45670 7.64890 7.74254 7.93094 8.11835 8.37134 9.32641 9.93327 10.60468 11.50414 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.002797 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.090975 B =10007.192575 C =11590.968109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.097 3.903 3 C 0.042 3.958 4 N -0.400 5.400 5 C 0.030 3.970 6 C 0.568 3.432 7 O -0.517 6.517 8 N -0.586 5.586 9 C 0.077 3.923 10 C -0.136 4.136 11 C -0.115 4.115 12 C -0.081 4.081 13 H 0.073 0.927 14 C -0.109 4.109 15 H 0.065 0.935 16 C -0.123 4.123 17 C 0.132 3.868 18 N -0.607 5.607 19 C -0.231 4.231 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.916 5.916 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.184 3.816 28 C 0.113 3.887 29 C 0.117 3.883 30 N -0.440 5.440 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.177 0.823 35 H 0.132 0.868 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.015 0.985 45 H 0.253 0.747 46 H 0.037 0.963 47 H 0.051 0.949 48 H 0.067 0.933 49 H 0.107 0.893 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.065 12.277 0.711 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.045 4.045 3 C -0.120 4.120 4 N -0.117 5.117 5 C -0.110 4.110 6 C 0.352 3.648 7 O -0.392 6.392 8 N -0.317 5.317 9 C -0.046 4.046 10 C -0.174 4.174 11 C -0.153 4.153 12 C -0.101 4.101 13 H 0.092 0.908 14 C -0.129 4.129 15 H 0.084 0.916 16 C -0.161 4.161 17 C 0.006 3.994 18 N -0.334 5.334 19 C -0.359 4.359 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.563 5.563 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.060 3.940 28 C -0.008 4.008 29 C -0.042 4.042 30 N -0.155 5.155 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.194 0.806 35 H 0.149 0.851 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.033 0.967 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.125 0.875 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -22.662 11.488 1.015 25.428 hybrid contribution 0.676 -0.638 -0.114 0.936 sum -21.986 10.850 0.901 24.534 Atomic orbital electron populations 1.20763 0.87283 1.04322 1.03831 1.22652 0.98832 0.89722 0.93264 1.23829 0.90608 0.99553 0.98013 1.68402 1.08467 1.27598 1.07237 1.22307 0.96121 0.90934 1.01656 1.17653 0.84729 0.83390 0.79000 1.90893 1.67983 1.32991 1.47346 1.47981 1.07535 1.13688 1.62505 1.22691 1.00268 0.86800 0.94795 1.21890 0.96879 1.01387 0.97257 1.21626 0.94174 0.97637 1.01849 1.21424 0.95236 0.97002 0.96418 0.90815 1.22459 0.92684 1.00754 0.96992 0.91623 1.22733 0.97842 0.98670 0.96862 1.21556 0.93801 0.88766 0.95258 1.44491 1.28902 1.13085 1.46916 1.19025 1.01456 0.90053 1.25374 0.90618 1.24822 0.98318 0.97836 0.99404 1.69954 1.29820 1.26213 1.30306 0.86167 0.79415 0.82980 0.77606 1.21761 1.21665 1.20759 1.21202 0.88074 0.90367 0.94396 1.21889 0.77024 1.04690 0.97199 1.23848 0.89806 0.99380 0.91207 1.68493 1.08298 1.28975 1.09772 0.89538 0.89846 0.89814 0.80642 0.85141 0.91634 0.91111 0.92061 0.92025 0.91567 0.91917 0.92496 0.94544 0.96733 0.93700 0.94516 0.93094 0.91426 0.87518 0.79876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.44 10.19 36.01 0.37 -0.07 16 2 C 0.10 0.78 6.79 -82.27 -0.56 0.22 16 3 C 0.04 0.31 10.88 -17.38 -0.19 0.13 16 4 N -0.40 -4.19 6.51 -9.62 -0.06 -4.25 16 5 C 0.03 0.38 6.47 -82.85 -0.54 -0.15 16 6 C 0.57 9.08 7.63 -12.19 -0.09 8.99 16 7 O -0.52 -10.21 15.95 5.34 0.09 -10.12 16 8 N -0.59 -8.62 2.98 -174.03 -0.52 -9.14 16 9 C 0.08 0.88 5.98 -3.93 -0.02 0.85 16 10 C -0.14 -1.46 6.07 -26.83 -0.16 -1.62 16 11 C -0.12 -1.42 4.97 -26.69 -0.13 -1.55 16 12 C -0.08 -1.29 1.74 -90.50 -0.16 -1.45 16 13 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 14 C -0.11 -2.00 2.49 -88.79 -0.22 -2.22 16 15 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.12 -2.15 5.38 -24.58 -0.13 -2.28 16 17 C 0.13 2.83 7.23 -2.53 -0.02 2.81 16 18 N -0.61 -16.06 3.39 -170.07 -0.58 -16.64 16 19 C -0.23 -6.66 10.27 -15.06 -0.15 -6.82 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 22 N -0.92 -27.90 10.35 55.49 0.57 -27.32 16 23 Si 0.91 22.90 29.56 -169.99 -5.02 17.88 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.18 4.54 4.24 -3.06 -0.01 4.53 16 28 C 0.11 1.87 5.48 -3.71 -0.02 1.85 16 29 C 0.12 1.42 10.76 -17.00 -0.18 1.23 16 30 N -0.44 -4.78 10.41 -8.95 -0.09 -4.88 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.16 8.09 -51.93 -0.42 -0.26 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 1.39 3.95 -80.03 -0.32 1.08 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 40 H 0.07 0.79 7.20 -51.93 -0.37 0.42 16 41 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 42 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.25 7.55 8.31 -40.82 -0.34 7.22 16 46 H 0.04 1.01 7.64 -51.93 -0.40 0.61 16 47 H 0.05 1.41 6.88 -51.93 -0.36 1.05 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.11 2.17 6.55 -51.93 -0.34 1.82 16 50 H 0.18 2.16 7.79 -52.49 -0.41 1.75 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -34.71 390.42 -10.12 -44.83 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.07 Total: -0.36 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.32 Total: 4.12 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.68 Total: -62.22 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.71 -10.12 -44.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961114806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.825 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds