Wall clock time and date at job start Wed Apr 1 2020 03:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38807 * 120.42681 * 2 1 4 4 C 1.39492 * 118.26558 * 179.97438 * 3 2 1 5 5 C 1.48452 * 120.55123 * 179.97438 * 4 3 2 6 6 O 1.21472 * 120.00035 * 351.13870 * 5 4 3 7 7 N 1.34783 * 120.00093 * 171.13988 * 5 4 3 8 8 C 1.46932 * 120.62857 * 352.53584 * 7 5 4 9 9 C 1.53188 * 108.77671 * 233.63185 * 8 7 5 10 10 C 1.53045 * 109.31076 * 305.36961 * 9 8 7 11 11 C 1.53036 * 109.53869 * 61.36555 * 10 9 8 12 12 H 1.08999 * 109.49896 * 58.58724 * 11 10 9 13 13 C 1.53004 * 109.52327 * 178.66800 * 11 10 9 14 14 H 1.08999 * 110.64167 * 59.21274 * 13 11 10 15 15 C 1.55153 * 110.72094 * 182.36090 * 13 11 10 16 16 C 1.55123 * 101.48388 * 153.73404 * 15 13 11 17 17 N 1.47418 * 104.94400 * 323.21788 * 16 15 13 18 18 C 1.36938 * 125.64841 * 203.96888 * 17 16 15 19 19 H 1.08008 * 119.99707 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00086 * 0.04606 * 18 17 16 21 21 N 1.31617 * 119.99889 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47029 * 89.99866 * 22 20 18 24 24 H 1.48499 * 109.46939 * 209.99690 * 22 20 18 25 25 H 1.48501 * 109.46851 * 329.99730 * 22 20 18 26 26 C 1.47024 * 108.70413 * 24.00560 * 17 16 15 27 27 C 1.46920 * 120.62929 * 172.56116 * 7 5 4 28 28 N 1.33109 * 118.89809 * 0.27653 * 4 3 2 29 29 C 1.31550 * 120.73951 * 359.43737 * 28 4 3 30 30 N 1.31918 * 121.91468 * 0.58072 * 29 28 4 31 31 H 1.09001 * 109.46747 * 90.00701 * 1 2 3 32 32 H 1.09001 * 109.47236 * 210.00273 * 1 2 3 33 33 H 1.08998 * 109.47501 * 330.00523 * 1 2 3 34 34 H 1.07998 * 120.86945 * 359.95232 * 3 2 1 35 35 H 1.09001 * 109.58581 * 353.42040 * 8 7 5 36 36 H 1.08997 * 109.58227 * 113.84536 * 8 7 5 37 37 H 1.09000 * 109.49635 * 65.31652 * 9 8 7 38 38 H 1.08995 * 109.49883 * 185.38410 * 9 8 7 39 39 H 1.09000 * 109.45762 * 301.34141 * 10 9 8 40 40 H 1.08999 * 109.45453 * 181.38750 * 10 9 8 41 41 H 1.09002 * 111.00314 * 271.93554 * 15 13 11 42 42 H 1.08999 * 111.00819 * 35.78627 * 15 13 11 43 43 H 1.09001 * 110.41642 * 204.29239 * 16 15 13 44 44 H 1.08999 * 110.30363 * 82.09346 * 16 15 13 45 45 H 0.97006 * 119.99951 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.88264 * 239.52353 * 26 17 16 47 47 H 1.08997 * 109.88366 * 118.35652 * 26 17 16 48 48 H 1.08998 * 109.58976 * 6.58268 * 27 7 5 49 49 H 1.09000 * 109.70563 * 246.22208 * 27 7 5 50 50 H 1.08001 * 119.04584 * 180.28666 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1443 0.0005 5 6 4.4061 2.3934 0.0000 6 8 3.8599 3.4660 -0.1630 7 7 5.7407 2.3372 0.1803 8 6 6.3949 1.0718 0.5401 9 6 7.2348 1.2922 1.8021 10 6 8.2014 2.4558 1.5698 11 6 7.4067 3.7332 1.2893 12 1 6.7483 3.9445 2.1319 13 6 8.3726 4.9030 1.0900 14 1 9.0489 4.7054 0.2584 15 6 7.5937 6.2253 0.8620 16 6 8.6167 7.2771 1.3656 17 7 9.2771 6.6423 2.5207 18 6 9.8932 7.3028 3.5500 19 1 10.3503 6.7440 4.3533 20 6 9.9297 8.6903 3.5612 21 7 9.3727 9.3712 2.5822 22 14 10.7695 9.5913 4.9657 23 1 12.2007 9.8038 4.6319 24 1 10.1098 10.9050 5.1757 25 1 10.6653 8.7812 6.2059 26 6 9.1656 5.1827 2.3841 27 6 6.5687 3.5404 0.0214 28 7 4.2027 -0.0445 -0.0046 29 6 3.4955 -1.1537 0.0010 30 7 2.1764 -1.1397 0.0005 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6912 2.1442 -0.0008 35 1 5.6382 0.3112 0.7329 36 1 7.0404 0.7491 -0.2767 37 1 6.5780 1.5266 2.6398 38 1 7.8004 0.3877 2.0252 39 1 8.8414 2.2314 0.7165 40 1 8.8173 2.5989 2.4577 41 1 7.3693 6.3693 -0.1949 42 1 6.6828 6.2504 1.4602 43 1 8.1044 8.1880 1.6751 44 1 9.3458 7.4988 0.5864 45 1 9.3985 10.3409 2.5898 46 1 8.6339 4.7697 3.2413 47 1 10.1591 4.7400 2.3130 48 1 5.9269 4.4087 -0.1279 49 1 7.2285 3.4216 -0.8381 50 1 4.0097 -2.1034 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961128992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:11 Heat of formation + Delta-G solvation = 49.324697 kcal Electronic energy + Delta-G solvation = -30301.499179 eV Core-core repulsion = 26329.821419 eV Total energy + Delta-G solvation = -3971.677760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.81312 -40.07590 -38.30471 -36.71067 -35.17711 -33.54746 -33.00554 -32.28755 -31.02813 -29.20014 -28.88266 -27.47729 -26.03718 -25.01532 -24.32953 -23.63344 -22.73109 -21.15620 -19.93590 -19.68528 -19.33153 -18.36748 -17.20742 -16.78561 -16.42728 -16.03600 -15.95385 -15.61658 -15.24955 -14.76420 -14.48124 -14.45571 -13.96839 -13.78492 -13.74618 -13.53568 -13.38230 -13.07663 -12.97518 -12.88394 -12.38051 -12.12713 -11.83040 -11.53842 -11.43019 -11.22766 -11.10110 -10.98175 -10.89360 -10.80095 -10.72318 -10.57600 -10.53190 -10.07635 -10.06509 -9.95607 -9.82800 -9.67280 -9.40097 -9.17272 -8.69570 -8.58906 -6.76255 -5.59542 -3.00964 0.07451 0.39468 2.44481 2.62322 3.32398 3.42749 3.46814 3.47351 3.49645 3.50431 3.91365 4.34955 4.47096 4.53263 4.74021 4.83130 4.93908 4.96103 5.00885 5.01795 5.07484 5.22172 5.29551 5.34360 5.46656 5.52309 5.55335 5.63611 5.69680 5.74263 5.80241 5.83153 5.97960 6.03470 6.05816 6.11071 6.17003 6.31847 6.37503 6.40884 6.48887 6.53805 6.68548 6.71896 6.84713 7.05733 7.19030 7.46014 7.59923 7.68927 7.85066 7.93260 8.43502 9.28249 9.89570 10.55442 11.44160 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022651 B = 0.002162 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.860206 B =12949.579224 C =13462.563638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.180 3.820 3 C -0.169 4.169 4 C 0.141 3.859 5 C 0.564 3.436 6 O -0.524 6.524 7 N -0.583 5.583 8 C 0.071 3.929 9 C -0.135 4.135 10 C -0.118 4.118 11 C -0.085 4.085 12 H 0.074 0.926 13 C -0.092 4.092 14 H 0.070 0.930 15 C -0.141 4.141 16 C 0.152 3.848 17 N -0.606 5.606 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.145 3.855 27 C 0.114 3.886 28 N -0.493 5.493 29 C 0.293 3.707 30 N -0.510 5.510 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.010 0.990 45 H 0.251 0.749 46 H 0.021 0.979 47 H 0.018 0.982 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 -23.561 -7.462 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.032 3.968 3 C -0.192 4.192 4 C -0.005 4.005 5 C 0.349 3.651 6 O -0.399 6.399 7 N -0.313 5.313 8 C -0.051 4.051 9 C -0.174 4.174 10 C -0.155 4.155 11 C -0.105 4.105 12 H 0.093 0.907 13 C -0.112 4.112 14 H 0.088 0.912 15 C -0.180 4.180 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.209 4.209 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.019 3.981 27 C -0.008 4.008 28 N -0.210 5.210 29 C 0.006 3.994 30 N -0.226 5.226 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.179 0.821 35 H 0.159 0.841 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.028 0.972 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.115 0.885 49 H 0.089 0.911 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -14.382 -23.589 -7.486 28.624 hybrid contribution 0.413 1.155 0.684 1.404 sum -13.969 -22.435 -6.802 27.289 Atomic orbital electron populations 1.20846 0.87067 1.04569 1.04128 1.21889 0.98041 0.87673 0.89162 1.22836 0.94516 1.01550 1.00301 1.21747 0.92207 0.92571 0.94017 1.17810 0.82200 0.86826 0.78274 1.90817 1.70613 1.28556 1.49961 1.48004 1.05515 1.11680 1.66131 1.23003 0.99101 0.86351 0.96641 1.21966 0.98400 0.99100 0.97889 1.21634 0.97655 0.93910 1.02327 1.21490 0.96681 0.94977 0.97341 0.90739 1.22133 0.96425 0.93831 0.98766 0.91152 1.23106 0.99289 0.95978 0.99584 1.21939 0.91883 0.95567 0.87880 1.44521 1.65501 0.99212 1.23912 1.19075 1.27722 0.89102 0.98979 0.90612 1.24792 1.01371 0.96215 0.98498 1.69817 1.49268 1.05824 1.32195 0.86082 0.78850 0.79229 0.81407 1.21698 1.21677 1.20754 1.21266 0.95916 0.86991 0.93900 1.21856 0.93620 0.87285 0.97995 1.68407 1.39572 0.98800 1.14223 1.25178 0.86730 0.97098 0.90392 1.68228 1.10482 1.30471 1.13382 0.89221 0.89533 0.89609 0.82109 0.84125 0.91588 0.91990 0.90845 0.91874 0.91129 0.92490 0.92182 0.87785 0.97233 0.93806 0.96079 0.96434 0.88542 0.91122 0.77958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.22 36.00 0.37 -0.12 16 2 C 0.18 1.39 6.83 -82.24 -0.56 0.83 16 3 C -0.17 -1.55 9.40 -38.90 -0.37 -1.91 16 4 C 0.14 1.53 6.61 -82.64 -0.55 0.98 16 5 C 0.56 7.58 7.67 -12.05 -0.09 7.49 16 6 O -0.52 -8.52 15.89 5.39 0.09 -8.44 16 7 N -0.58 -7.30 2.97 -173.65 -0.52 -7.82 16 8 C 0.07 0.72 5.92 -3.71 -0.02 0.70 16 9 C -0.14 -1.38 6.08 -26.61 -0.16 -1.54 16 10 C -0.12 -1.42 5.01 -26.69 -0.13 -1.56 16 11 C -0.09 -1.23 1.72 -90.50 -0.16 -1.38 16 12 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 13 C -0.09 -1.60 2.49 -88.78 -0.22 -1.82 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.14 -2.76 5.63 -24.47 -0.14 -2.90 16 16 C 0.15 3.82 5.89 -2.42 -0.01 3.81 16 17 N -0.61 -16.00 3.40 -169.94 -0.58 -16.58 16 18 C -0.22 -6.31 10.27 -15.06 -0.15 -6.47 16 19 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 20 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 21 N -0.92 -27.58 10.09 55.49 0.56 -27.02 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.15 3.08 5.89 -3.06 -0.02 3.06 16 27 C 0.11 1.54 5.43 -3.71 -0.02 1.52 16 28 N -0.49 -4.53 6.31 -11.14 -0.07 -4.60 16 29 C 0.29 2.19 12.28 -92.26 -1.13 1.06 16 30 N -0.51 -4.25 10.36 -10.81 -0.11 -4.36 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.27 8.10 -51.93 -0.42 -0.15 16 34 H 0.16 1.35 7.76 -52.49 -0.41 0.94 16 35 H 0.14 1.33 4.01 -81.87 -0.33 1.01 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.91 7.28 -51.93 -0.38 0.53 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 43 H 0.10 2.94 5.87 -51.93 -0.31 2.64 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.02 0.45 7.68 -51.93 -0.40 0.05 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.10 1.48 6.43 -51.93 -0.33 1.14 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.20 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -33.73 389.76 -11.28 -45.01 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.03 Total: -0.84 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.46 Total: 1.26 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.72 Total: -60.38 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.73 -11.28 -45.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961128992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.331 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds