Wall clock time and date at job start Wed Apr 1 2020 03:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38807 * 120.42681 * 2 1 4 4 C 1.39492 * 118.26558 * 179.97438 * 3 2 1 5 5 C 1.48452 * 120.55123 * 179.97438 * 4 3 2 6 6 O 1.21472 * 120.00035 * 351.13870 * 5 4 3 7 7 N 1.34783 * 120.00093 * 171.13988 * 5 4 3 8 8 C 1.46932 * 120.62857 * 352.53584 * 7 5 4 9 9 C 1.53188 * 108.77671 * 233.63185 * 8 7 5 10 10 C 1.53045 * 109.31076 * 305.36961 * 9 8 7 11 11 C 1.53036 * 109.53869 * 61.36555 * 10 9 8 12 12 H 1.08999 * 109.49896 * 58.58724 * 11 10 9 13 13 C 1.53004 * 109.52327 * 178.66800 * 11 10 9 14 14 H 1.08999 * 110.64167 * 59.21274 * 13 11 10 15 15 C 1.55153 * 110.72094 * 182.36090 * 13 11 10 16 16 C 1.55123 * 101.48388 * 153.73404 * 15 13 11 17 17 N 1.47418 * 104.94400 * 323.21788 * 16 15 13 18 18 C 1.36938 * 125.64841 * 203.96888 * 17 16 15 19 19 H 1.08008 * 119.99707 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00086 * 0.04606 * 18 17 16 21 21 N 1.31617 * 119.99889 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47029 * 89.99866 * 22 20 18 24 24 H 1.48499 * 109.46939 * 209.99690 * 22 20 18 25 25 H 1.48501 * 109.46851 * 329.99730 * 22 20 18 26 26 C 1.47024 * 108.70413 * 24.00560 * 17 16 15 27 27 C 1.46920 * 120.62929 * 172.56116 * 7 5 4 28 28 N 1.33109 * 118.89809 * 0.27653 * 4 3 2 29 29 C 1.31550 * 120.73951 * 359.43737 * 28 4 3 30 30 N 1.31918 * 121.91468 * 0.58072 * 29 28 4 31 31 H 1.09001 * 109.46747 * 90.00701 * 1 2 3 32 32 H 1.09001 * 109.47236 * 210.00273 * 1 2 3 33 33 H 1.08998 * 109.47501 * 330.00523 * 1 2 3 34 34 H 1.07998 * 120.86945 * 359.95232 * 3 2 1 35 35 H 1.09001 * 109.58581 * 353.42040 * 8 7 5 36 36 H 1.08997 * 109.58227 * 113.84536 * 8 7 5 37 37 H 1.09000 * 109.49635 * 65.31652 * 9 8 7 38 38 H 1.08995 * 109.49883 * 185.38410 * 9 8 7 39 39 H 1.09000 * 109.45762 * 301.34141 * 10 9 8 40 40 H 1.08999 * 109.45453 * 181.38750 * 10 9 8 41 41 H 1.09002 * 111.00314 * 271.93554 * 15 13 11 42 42 H 1.08999 * 111.00819 * 35.78627 * 15 13 11 43 43 H 1.09001 * 110.41642 * 204.29239 * 16 15 13 44 44 H 1.08999 * 110.30363 * 82.09346 * 16 15 13 45 45 H 0.97006 * 119.99951 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.88264 * 239.52353 * 26 17 16 47 47 H 1.08997 * 109.88366 * 118.35652 * 26 17 16 48 48 H 1.08998 * 109.58976 * 6.58268 * 27 7 5 49 49 H 1.09000 * 109.70563 * 246.22208 * 27 7 5 50 50 H 1.08001 * 119.04584 * 180.28666 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1443 0.0005 5 6 4.4061 2.3934 0.0000 6 8 3.8599 3.4660 -0.1630 7 7 5.7407 2.3372 0.1803 8 6 6.3949 1.0718 0.5401 9 6 7.2348 1.2922 1.8021 10 6 8.2014 2.4558 1.5698 11 6 7.4067 3.7332 1.2893 12 1 6.7483 3.9445 2.1319 13 6 8.3726 4.9030 1.0900 14 1 9.0489 4.7054 0.2584 15 6 7.5937 6.2253 0.8620 16 6 8.6167 7.2771 1.3656 17 7 9.2771 6.6423 2.5207 18 6 9.8932 7.3028 3.5500 19 1 10.3503 6.7440 4.3533 20 6 9.9297 8.6903 3.5612 21 7 9.3727 9.3712 2.5822 22 14 10.7695 9.5913 4.9657 23 1 12.2007 9.8038 4.6319 24 1 10.1098 10.9050 5.1757 25 1 10.6653 8.7812 6.2059 26 6 9.1656 5.1827 2.3841 27 6 6.5687 3.5404 0.0214 28 7 4.2027 -0.0445 -0.0046 29 6 3.4955 -1.1537 0.0010 30 7 2.1764 -1.1397 0.0005 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6912 2.1442 -0.0008 35 1 5.6382 0.3112 0.7329 36 1 7.0404 0.7491 -0.2767 37 1 6.5780 1.5266 2.6398 38 1 7.8004 0.3877 2.0252 39 1 8.8414 2.2314 0.7165 40 1 8.8173 2.5989 2.4577 41 1 7.3693 6.3693 -0.1949 42 1 6.6828 6.2504 1.4602 43 1 8.1044 8.1880 1.6751 44 1 9.3458 7.4988 0.5864 45 1 9.3985 10.3409 2.5898 46 1 8.6339 4.7697 3.2413 47 1 10.1591 4.7400 2.3130 48 1 5.9269 4.4087 -0.1279 49 1 7.2285 3.4216 -0.8381 50 1 4.0097 -2.1034 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961128992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:10 Heat of formation + Delta-G solvation = 30.336991 kcal Electronic energy + Delta-G solvation = -30302.322548 eV Core-core repulsion = 26329.821419 eV Total energy + Delta-G solvation = -3972.501129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.51916 -41.05660 -39.67426 -38.08051 -35.94458 -35.00358 -33.79652 -33.49971 -32.51337 -30.66589 -29.71172 -29.00151 -27.04058 -26.59532 -25.36004 -24.44340 -23.87635 -22.34005 -21.72246 -20.81204 -20.57650 -19.15595 -18.86053 -17.97627 -17.30077 -17.08783 -16.74844 -16.71835 -16.42297 -16.14936 -15.72292 -15.57992 -15.35602 -15.11534 -14.59784 -14.42586 -14.24251 -14.13793 -13.95013 -13.86141 -13.62087 -13.40649 -13.23744 -13.19728 -12.86824 -12.73999 -12.50859 -12.33545 -12.09979 -11.98823 -11.88394 -11.77947 -11.70808 -11.61123 -11.52037 -11.36151 -11.32617 -11.00869 -10.74991 -10.71188 -9.94125 -9.69834 -8.88868 -7.78020 -5.22721 -0.67021 -0.19565 1.44149 1.46866 1.54938 1.55591 1.70620 2.48612 2.63708 2.74417 3.01938 3.23635 3.30849 3.60642 3.66420 3.69177 3.77560 3.89738 3.95572 4.13472 4.16322 4.26246 4.30787 4.38862 4.42823 4.49034 4.58403 4.66058 4.69892 4.72518 4.77918 4.79810 4.86675 4.87873 4.93323 4.98108 5.07560 5.13691 5.15536 5.19083 5.30482 5.37776 5.40939 5.44942 5.52867 5.64946 5.65308 5.70875 5.81661 6.24445 6.30479 6.78089 6.92800 7.09951 7.78411 8.43038 9.23987 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022651 B = 0.002162 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.860206 B =12949.579224 C =13462.563638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.184 3.816 3 C -0.177 4.177 4 C 0.124 3.876 5 C 0.558 3.442 6 O -0.564 6.564 7 N -0.583 5.583 8 C 0.071 3.929 9 C -0.129 4.129 10 C -0.115 4.115 11 C -0.074 4.074 12 H 0.051 0.949 13 C -0.075 4.075 14 H 0.087 0.913 15 C -0.126 4.126 16 C 0.154 3.846 17 N -0.629 5.629 18 C -0.239 4.239 19 H 0.080 0.920 20 C -0.072 4.072 21 N -0.951 5.951 22 Si 0.983 3.017 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.142 3.858 27 C 0.118 3.882 28 N -0.497 5.497 29 C 0.296 3.704 30 N -0.519 5.519 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.067 0.933 44 H -0.012 1.012 45 H 0.246 0.754 46 H 0.021 0.979 47 H 0.024 0.976 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.830 -26.782 -7.609 31.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.036 3.964 3 C -0.200 4.200 4 C -0.022 4.022 5 C 0.344 3.656 6 O -0.443 6.443 7 N -0.313 5.313 8 C -0.050 4.050 9 C -0.167 4.167 10 C -0.152 4.152 11 C -0.093 4.093 12 H 0.070 0.930 13 C -0.094 4.094 14 H 0.105 0.895 15 C -0.165 4.165 16 C 0.029 3.971 17 N -0.356 5.356 18 C -0.368 4.368 19 H 0.098 0.902 20 C -0.264 4.264 21 N -0.601 5.601 22 Si 0.810 3.190 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.194 1.194 26 C 0.017 3.983 27 C -0.005 4.005 28 N -0.214 5.214 29 C 0.009 3.991 30 N -0.235 5.235 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.006 0.994 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.042 0.958 48 H 0.093 0.907 49 H 0.107 0.893 50 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -14.563 -26.872 -7.627 31.502 hybrid contribution 0.444 2.095 0.726 2.261 sum -14.118 -24.778 -6.901 29.341 Atomic orbital electron populations 1.20970 0.84777 1.05526 1.05211 1.22363 0.99479 0.86924 0.87638 1.22941 0.94060 1.02337 1.00658 1.21450 0.92528 0.92238 0.95941 1.18239 0.82493 0.87348 0.77497 1.90784 1.71401 1.30238 1.51841 1.48116 1.05392 1.12093 1.65655 1.23205 0.99443 0.85329 0.97006 1.21939 0.97932 0.99322 0.97468 1.21617 0.97805 0.93190 1.02613 1.21316 0.95924 0.95014 0.97067 0.93020 1.22035 0.96388 0.93744 0.97279 0.89472 1.22920 0.97476 0.95520 1.00539 1.21725 0.92180 0.96035 0.87196 1.44861 1.65471 1.01534 1.23690 1.19475 1.27741 0.89777 0.99786 0.90167 1.25699 1.02459 0.97095 1.01169 1.70086 1.50445 1.05578 1.33947 0.85014 0.77588 0.77613 0.78736 1.21198 1.21949 1.19372 1.21440 0.96775 0.84223 0.95826 1.21704 0.93442 0.87391 0.97923 1.68322 1.39755 0.98570 1.14793 1.25916 0.86713 0.97703 0.88766 1.68346 1.10961 1.30520 1.13647 0.87884 0.88831 0.88392 0.82101 0.83202 0.90044 0.93284 0.88103 0.90258 0.91934 0.90114 0.93084 0.91465 0.99432 0.94386 0.96147 0.95786 0.90736 0.89349 0.74423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.22 71.23 0.73 0.00 16 2 C 0.18 2.53 6.83 42.64 0.29 2.82 16 3 C -0.18 -3.11 9.40 22.71 0.21 -2.90 16 4 C 0.12 2.58 6.61 41.98 0.28 2.86 16 5 C 0.56 14.95 7.67 86.97 0.67 15.61 16 6 O -0.56 -18.93 15.89 -3.63 -0.06 -18.98 16 7 N -0.58 -13.98 2.97 -821.63 -2.44 -16.42 16 8 C 0.07 1.25 5.92 86.36 0.51 1.77 16 9 C -0.13 -2.28 6.08 30.67 0.19 -2.10 16 10 C -0.11 -2.51 5.01 30.62 0.15 -2.36 16 11 C -0.07 -2.05 1.72 -10.71 -0.02 -2.07 16 12 H 0.05 1.69 8.12 -2.39 -0.02 1.67 16 13 C -0.08 -2.56 2.49 -9.60 -0.02 -2.58 16 14 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 15 C -0.13 -5.02 5.63 32.06 0.18 -4.84 16 16 C 0.15 8.03 5.89 86.93 0.51 8.54 16 17 N -0.63 -34.07 3.40 -691.57 -2.35 -36.42 16 18 C -0.24 -13.95 10.27 84.03 0.86 -13.08 16 19 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 20 C -0.07 -4.24 5.49 84.86 0.47 -3.78 16 21 N -0.95 -58.93 10.09 21.65 0.22 -58.71 16 22 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 C 0.14 6.03 5.89 86.73 0.51 6.54 16 27 C 0.12 3.07 5.43 86.37 0.47 3.54 16 28 N -0.50 -8.11 6.31 -189.16 -1.19 -9.30 16 29 C 0.30 3.60 12.28 180.92 2.22 5.82 16 30 N -0.52 -7.42 10.36 -188.10 -1.95 -9.36 16 31 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 0.43 8.10 -2.39 -0.02 0.42 16 34 H 0.16 2.72 7.76 -2.91 -0.02 2.70 16 35 H 0.15 2.45 4.01 -61.50 -0.25 2.21 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.49 7.28 -2.39 -0.02 1.47 16 41 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.05 2.11 8.05 -2.39 -0.02 2.09 16 43 H 0.07 4.02 5.87 -2.39 -0.01 4.00 16 44 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 45 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 46 H 0.02 0.87 7.68 -2.39 -0.02 0.85 16 47 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 2.30 6.43 -2.39 -0.02 2.28 16 49 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.24 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -76.20 389.76 3.16 -73.03 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.70 Total: 13.25 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 8.21 Total: 13.80 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -7.71 Total: -130.22 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.06 Total: -18.98 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -76.20 3.16 -73.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961128992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.370 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds