Wall clock time and date at job start Wed Apr 1 2020 03:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38814 * 120.42518 * 2 1 4 4 C 1.39491 * 118.26012 * 180.22093 * 3 2 1 5 5 C 1.48457 * 120.54946 * 179.75573 * 4 3 2 6 6 O 1.21486 * 119.99655 * 20.83682 * 5 4 3 7 7 N 1.34775 * 120.00431 * 200.83967 * 5 4 3 8 8 C 1.46927 * 120.62905 * 359.40955 * 7 5 4 9 9 C 1.53188 * 108.77577 * 126.41397 * 8 7 5 10 10 C 1.53042 * 109.30963 * 54.63508 * 9 8 7 11 11 C 1.53041 * 109.54154 * 298.63391 * 10 9 8 12 12 H 1.09004 * 109.52262 * 301.39965 * 11 10 9 13 13 C 1.52998 * 109.49915 * 181.31882 * 11 10 9 14 14 H 1.09003 * 110.88410 * 296.28216 * 13 11 10 15 15 C 1.55153 * 111.00669 * 60.15951 * 13 11 10 16 16 C 1.54324 * 102.94356 * 153.57531 * 15 13 11 17 17 N 1.47018 * 107.27076 * 337.81086 * 16 15 13 18 18 C 1.36932 * 125.65002 * 178.96196 * 17 16 15 19 19 H 1.07998 * 120.00025 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00192 * 359.97330 * 18 17 16 21 21 N 1.31625 * 119.99538 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00300 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47085 * 90.00344 * 22 20 18 24 24 H 1.48507 * 109.47167 * 209.99855 * 22 20 18 25 25 H 1.48491 * 109.47327 * 329.99845 * 22 20 18 26 26 C 1.47424 * 108.70386 * 358.93725 * 17 16 15 27 27 C 1.46927 * 120.63160 * 179.43570 * 7 5 4 28 28 N 1.33105 * 118.90459 * 359.48391 * 4 3 2 29 29 C 1.31555 * 120.73548 * 0.27143 * 28 4 3 30 30 N 1.31909 * 121.91801 * 359.97438 * 29 28 4 31 31 H 1.09008 * 109.47050 * 270.29954 * 1 2 3 32 32 H 1.09000 * 109.47534 * 30.30190 * 1 2 3 33 33 H 1.08996 * 109.47108 * 150.30398 * 1 2 3 34 34 H 1.07997 * 120.86508 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.58819 * 246.20446 * 8 7 5 36 36 H 1.09001 * 109.58424 * 6.62734 * 8 7 5 37 37 H 1.08998 * 109.50092 * 174.58712 * 9 8 7 38 38 H 1.08998 * 109.49626 * 294.68449 * 9 8 7 39 39 H 1.09005 * 109.45778 * 178.61118 * 10 9 8 40 40 H 1.09004 * 109.45949 * 58.66025 * 10 9 8 41 41 H 1.09002 * 110.72364 * 271.94515 * 15 13 11 42 42 H 1.09006 * 110.71477 * 35.03467 * 15 13 11 43 43 H 1.09002 * 109.87799 * 97.22889 * 16 15 13 44 44 H 1.09000 * 109.88137 * 218.39820 * 16 15 13 45 45 H 0.96998 * 119.99889 * 180.02562 * 21 20 18 46 46 H 1.08998 * 110.37357 * 265.29120 * 26 17 16 47 47 H 1.08998 * 110.36799 * 142.96722 * 26 17 16 48 48 H 1.09004 * 109.58377 * 113.79777 * 27 7 5 49 49 H 1.08999 * 109.58762 * 353.37388 * 27 7 5 50 50 H 1.07998 * 119.04121 * 180.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1970 0.0000 4 6 3.6038 1.1443 -0.0047 5 6 4.4061 2.3934 -0.0104 6 8 3.9084 3.4367 0.3632 7 7 5.6867 2.3700 -0.4300 8 6 6.3065 1.1135 -0.8727 9 6 6.8961 1.3205 -2.2713 10 6 7.8497 2.5172 -2.2465 11 6 7.0771 3.7794 -1.8564 12 1 6.2703 3.9478 -2.5698 13 6 8.0244 4.9808 -1.8639 14 1 8.8032 4.8663 -1.1099 15 6 8.6406 5.1944 -3.2717 16 6 8.9554 6.7052 -3.2856 17 7 8.0931 7.3400 -2.2782 18 6 8.0798 8.6729 -1.9649 19 1 7.4057 9.0426 -1.2064 20 6 8.9328 9.5490 -2.6220 21 7 9.7540 9.0984 -3.5468 22 14 8.9152 11.3672 -2.1941 23 1 9.8894 11.6286 -1.1042 24 1 9.2881 12.1614 -3.3923 25 1 7.5543 11.7570 -1.7458 26 6 7.2447 6.3040 -1.6616 27 6 6.4896 3.6003 -0.4531 28 7 4.2027 -0.0444 0.0014 29 6 3.4954 -1.1536 0.0065 30 7 2.1764 -1.1397 0.0062 31 1 -0.3633 0.0054 1.0277 32 1 -0.3634 0.8872 -0.5185 33 1 -0.3633 -0.8927 -0.5091 34 1 1.6911 2.1442 -0.0004 35 1 7.0997 0.8333 -0.1795 36 1 5.5531 0.3265 -0.9065 37 1 7.4421 0.4263 -2.5720 38 1 6.0910 1.5114 -2.9808 39 1 8.2895 2.6516 -3.2348 40 1 8.6408 2.3362 -1.5188 41 1 9.5530 4.6092 -3.3863 42 1 7.9210 4.9405 -4.0502 43 1 10.0031 6.8678 -3.0324 44 1 8.7413 7.1194 -4.2708 45 1 10.3503 9.7105 -4.0058 46 1 6.2788 6.2558 -2.1644 47 1 7.1104 6.5065 -0.5991 48 1 7.2977 3.5228 0.2743 49 1 5.8570 4.4540 -0.2100 50 1 4.0097 -2.1033 0.0119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961128998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:13 Heat of formation + Delta-G solvation = 27.114955 kcal Electronic energy + Delta-G solvation = -30316.080210 eV Core-core repulsion = 26343.439363 eV Total energy + Delta-G solvation = -3972.640847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.52539 -41.05369 -39.67449 -38.09976 -35.93497 -35.01490 -33.80403 -33.48656 -32.45256 -30.87125 -29.71010 -28.74191 -27.41033 -26.32719 -25.44984 -24.46447 -23.87829 -22.25464 -21.70706 -20.91556 -20.55205 -19.20016 -18.80656 -18.00703 -17.38933 -17.01359 -16.71971 -16.65757 -16.39065 -16.15569 -15.76094 -15.59825 -15.37325 -15.16533 -14.64705 -14.34383 -14.18921 -14.04607 -13.98246 -13.88869 -13.79373 -13.52613 -13.24313 -13.20776 -12.88854 -12.75466 -12.28863 -12.24395 -12.12698 -12.03539 -11.83377 -11.80652 -11.73841 -11.63820 -11.50659 -11.40027 -11.33202 -11.06040 -10.72205 -10.70422 -9.99867 -9.71903 -8.90895 -7.86658 -5.22188 -0.64801 -0.20078 1.42937 1.45439 1.51124 1.54255 1.69299 2.47858 2.59045 2.77307 3.01742 3.23440 3.30599 3.59103 3.61996 3.67254 3.83203 3.88959 3.97884 4.13103 4.18064 4.22970 4.30908 4.35222 4.43490 4.48185 4.57959 4.65357 4.68541 4.72148 4.79261 4.80737 4.87551 4.88368 4.93860 4.98007 5.07481 5.12406 5.13802 5.19843 5.31806 5.36470 5.41158 5.44046 5.53698 5.60808 5.68706 5.70538 5.77703 6.19210 6.22743 6.77912 6.91965 7.09622 7.76913 8.41748 9.23714 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.002265 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.234682 B =12357.330779 C =13376.727040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.184 3.816 3 C -0.179 4.179 4 C 0.125 3.875 5 C 0.558 3.442 6 O -0.567 6.567 7 N -0.581 5.581 8 C 0.071 3.929 9 C -0.128 4.128 10 C -0.112 4.112 11 C -0.072 4.072 12 H 0.060 0.940 13 C -0.076 4.076 14 H 0.080 0.920 15 C -0.118 4.118 16 C 0.183 3.817 17 N -0.630 5.630 18 C -0.245 4.245 19 H 0.078 0.922 20 C -0.068 4.068 21 N -0.951 5.951 22 Si 0.980 3.020 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.271 1.271 26 C 0.135 3.865 27 C 0.115 3.885 28 N -0.498 5.498 29 C 0.296 3.704 30 N -0.519 5.519 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.160 0.840 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.012 0.988 44 H 0.001 0.999 45 H 0.247 0.753 46 H 0.012 0.988 47 H 0.035 0.965 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.630 -28.099 5.779 31.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.036 3.964 3 C -0.202 4.202 4 C -0.020 4.020 5 C 0.344 3.656 6 O -0.445 6.445 7 N -0.311 5.311 8 C -0.050 4.050 9 C -0.166 4.166 10 C -0.150 4.150 11 C -0.092 4.092 12 H 0.078 0.922 13 C -0.095 4.095 14 H 0.098 0.902 15 C -0.156 4.156 16 C 0.058 3.942 17 N -0.356 5.356 18 C -0.374 4.374 19 H 0.095 0.905 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.808 3.192 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.196 1.196 26 C 0.010 3.990 27 C -0.007 4.007 28 N -0.216 5.216 29 C 0.009 3.991 30 N -0.234 5.234 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.178 0.822 35 H 0.099 0.901 36 H 0.163 0.837 37 H 0.120 0.880 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.030 0.970 44 H 0.020 0.980 45 H 0.056 0.944 46 H 0.030 0.970 47 H 0.053 0.947 48 H 0.101 0.899 49 H 0.088 0.912 50 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -13.295 -28.198 5.926 31.734 hybrid contribution 0.013 2.573 -0.020 2.573 sum -13.283 -25.625 5.906 29.461 Atomic orbital electron populations 1.20968 0.84783 1.05549 1.05176 1.22349 0.99460 0.86907 0.87658 1.22929 0.94009 1.02337 1.00893 1.21407 0.92512 0.92214 0.95856 1.18263 0.82018 0.87067 0.78249 1.90799 1.71470 1.32480 1.49780 1.48127 1.10307 1.11221 1.61431 1.23125 1.00851 0.85683 0.95367 1.21937 0.98965 0.99257 0.96461 1.21601 0.97994 0.92665 1.02729 1.21296 0.97147 0.94943 0.95818 0.92196 1.22174 0.97183 0.92619 0.97571 0.90168 1.22725 1.00895 0.95455 0.96504 1.20938 0.92940 0.89582 0.90775 1.44839 1.43506 1.03570 1.43695 1.19455 1.17444 0.83471 1.17009 0.90458 1.25681 0.98779 1.02629 0.99001 1.70201 1.26815 1.34323 1.28668 0.85057 0.77956 0.79414 0.76788 1.21016 1.21810 1.19619 1.21752 0.92841 0.88751 0.95627 1.21728 0.94783 0.86490 0.97712 1.68311 1.40111 0.98502 1.14628 1.25892 0.86704 0.97623 0.88853 1.68343 1.10943 1.30487 1.13677 0.87963 0.88392 0.88773 0.82217 0.90083 0.83710 0.88003 0.92863 0.90849 0.90601 0.89586 0.91575 0.97016 0.98025 0.94370 0.97047 0.94673 0.89893 0.91221 0.74394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.22 71.23 0.73 -0.02 16 2 C 0.18 2.56 6.83 42.64 0.29 2.86 16 3 C -0.18 -3.19 9.41 22.71 0.21 -2.98 16 4 C 0.13 2.65 6.50 41.98 0.27 2.93 16 5 C 0.56 15.20 7.65 86.97 0.66 15.86 16 6 O -0.57 -19.55 16.02 -3.67 -0.06 -19.61 16 7 N -0.58 -14.03 2.97 -821.62 -2.44 -16.47 16 8 C 0.07 1.21 6.03 86.36 0.52 1.74 16 9 C -0.13 -2.04 6.08 30.67 0.19 -1.85 16 10 C -0.11 -2.21 4.97 30.62 0.15 -2.06 16 11 C -0.07 -1.91 1.86 -10.72 -0.02 -1.93 16 12 H 0.06 1.77 8.08 -2.38 -0.02 1.75 16 13 C -0.08 -2.54 2.56 -9.40 -0.02 -2.57 16 14 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 15 C -0.12 -4.28 5.28 31.78 0.17 -4.12 16 16 C 0.18 9.38 5.37 86.73 0.47 9.85 16 17 N -0.63 -34.35 3.39 -692.01 -2.35 -36.70 16 18 C -0.24 -14.53 10.28 84.03 0.86 -13.67 16 19 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 20 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 21 N -0.95 -59.23 10.31 21.65 0.22 -59.00 16 22 Si 0.98 47.63 29.55 68.60 2.03 49.65 16 23 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 26 C 0.14 5.91 6.05 86.85 0.53 6.44 16 27 C 0.12 3.10 5.49 86.36 0.47 3.57 16 28 N -0.50 -8.23 6.52 -189.17 -1.23 -9.47 16 29 C 0.30 3.63 12.27 180.92 2.22 5.86 16 30 N -0.52 -7.46 10.36 -188.10 -1.95 -9.41 16 31 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.10 0.45 8.10 -2.39 -0.02 0.43 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.16 2.75 7.87 -2.91 -0.02 2.72 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.15 2.31 3.95 -53.93 -0.21 2.10 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.44 7.22 -2.38 -0.02 1.42 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 2.68 8.09 -2.39 -0.02 2.66 16 42 H 0.07 2.27 8.04 -2.38 -0.02 2.25 16 43 H 0.01 0.66 7.38 -2.39 -0.02 0.65 16 44 H 0.00 0.09 7.51 -2.39 -0.02 0.07 16 45 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 46 H 0.01 0.52 7.98 -2.39 -0.02 0.50 16 47 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 49 H 0.07 2.28 6.61 -2.39 -0.02 2.26 16 50 H 0.24 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -77.83 391.09 3.12 -74.71 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.73 Total: 9.99 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 8.17 Total: 16.31 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -7.75 Total: -131.06 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.06 Total: -19.61 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal Total: -77.83 3.12 -74.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961128998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.822 kcal (2) G-P(sol) polarization free energy of solvation -77.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds