Wall clock time and date at job start Wed Apr 1 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38812 * 120.42463 * 2 1 4 4 C 1.39498 * 118.26050 * 180.22601 * 3 2 1 5 5 C 1.48459 * 120.54577 * 179.72432 * 4 3 2 6 6 O 1.21479 * 120.00018 * 8.93106 * 5 4 3 7 7 N 1.34773 * 119.99959 * 188.92800 * 5 4 3 8 8 C 1.46929 * 120.62827 * 7.18129 * 7 5 4 9 9 C 1.53626 * 108.53909 * 126.36996 * 8 7 5 10 10 C 1.53041 * 109.24356 * 54.85848 * 9 8 7 11 11 C 1.53044 * 109.53456 * 298.50853 * 10 9 8 12 12 H 1.08993 * 109.49690 * 301.41255 * 11 10 9 13 13 C 1.53000 * 109.52139 * 181.33364 * 11 10 9 14 14 H 1.09006 * 110.88339 * 297.71747 * 13 11 10 15 15 C 1.55155 * 111.00184 * 173.79531 * 13 11 10 16 16 C 1.54331 * 102.94372 * 206.42088 * 15 13 11 17 17 N 1.47026 * 107.26574 * 22.19574 * 16 15 13 18 18 C 1.36933 * 125.64483 * 181.09700 * 17 16 15 19 19 H 1.08001 * 119.99977 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00269 * 359.95136 * 18 17 16 21 21 N 1.31623 * 119.99839 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00304 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46600 * 90.00303 * 22 20 18 24 24 H 1.48499 * 109.47259 * 210.00298 * 22 20 18 25 25 H 1.48496 * 109.47229 * 330.00736 * 22 20 18 26 26 C 1.47417 * 108.70464 * 1.05423 * 17 16 15 27 27 C 1.46926 * 120.63285 * 187.46412 * 7 5 4 28 28 N 1.33103 * 118.90367 * 359.49876 * 4 3 2 29 29 C 1.31552 * 120.73329 * 0.51644 * 28 4 3 30 30 N 1.31915 * 121.91988 * 359.72904 * 29 28 4 31 31 H 1.08999 * 109.47384 * 90.00067 * 1 2 3 32 32 H 1.09000 * 109.46889 * 210.00294 * 1 2 3 33 33 H 1.09003 * 109.47555 * 329.99666 * 1 2 3 34 34 H 1.07997 * 120.86966 * 359.95775 * 3 2 1 35 35 H 1.09003 * 109.58911 * 246.20073 * 8 7 5 36 36 H 1.08996 * 109.58760 * 6.62932 * 8 7 5 37 37 H 1.08998 * 109.63884 * 294.86337 * 9 8 7 38 38 H 1.09005 * 109.45467 * 174.74114 * 9 8 7 39 39 H 1.08998 * 109.46162 * 178.48930 * 10 9 8 40 40 H 1.09002 * 109.44972 * 58.51851 * 10 9 8 41 41 H 1.08997 * 110.72109 * 324.78540 * 15 13 11 42 42 H 1.09002 * 110.71908 * 88.06415 * 15 13 11 43 43 H 1.08997 * 109.88282 * 262.78267 * 16 15 13 44 44 H 1.08992 * 110.00895 * 141.68303 * 16 15 13 45 45 H 0.97000 * 119.99763 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.37061 * 217.02960 * 26 17 16 47 47 H 1.09001 * 110.46028 * 94.76143 * 26 17 16 48 48 H 1.08998 * 109.58327 * 353.37247 * 27 7 5 49 49 H 1.08998 * 109.58500 * 113.79605 * 27 7 5 50 50 H 1.08007 * 119.04062 * 179.75793 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1970 0.0000 4 6 3.6039 1.1443 -0.0048 5 6 4.4061 2.3935 -0.0112 6 8 3.8604 3.4666 0.1510 7 7 5.7398 2.3369 -0.1970 8 6 6.3933 1.0691 -0.5499 9 6 7.2280 1.2871 -1.8210 10 6 8.1957 2.4511 -1.5955 11 6 7.4020 3.7295 -1.3158 12 1 6.7408 3.9384 -2.1566 13 6 8.3688 4.8996 -1.1233 14 1 9.0143 4.7326 -0.2610 15 6 7.5995 6.2406 -0.9919 16 6 8.6277 7.2790 -1.4883 17 7 9.5965 6.5648 -2.3326 18 6 10.6827 7.1252 -2.9499 19 1 11.3376 6.5125 -3.5517 20 6 10.9419 8.4809 -2.8028 21 7 10.1438 9.2277 -2.0694 22 14 12.4241 9.2453 -3.6443 23 1 12.0353 9.7199 -4.9966 24 1 12.9136 10.3928 -2.8387 25 1 13.5017 8.2309 -3.7666 26 6 9.2053 5.1452 -2.4038 27 6 6.5686 3.5404 -0.0445 28 7 4.2028 -0.0444 0.0009 29 6 3.4955 -1.1535 0.0009 30 7 2.1764 -1.1396 0.0004 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6912 2.1442 -0.0007 35 1 7.0421 0.7527 0.2669 36 1 5.6364 0.3068 -0.7343 37 1 6.5684 1.5191 -2.6571 38 1 7.7932 0.3821 -2.0438 39 1 8.8084 2.5917 -2.4859 40 1 8.8384 2.2290 -0.7437 41 1 6.7137 6.2409 -1.6270 42 1 7.3305 6.4306 0.0472 43 1 9.1389 7.7302 -0.6379 44 1 8.1261 8.0512 -2.0715 45 1 10.3251 10.1750 -1.9662 46 1 10.0895 4.5078 -2.4074 47 1 8.6018 4.9604 -3.2924 48 1 5.9274 4.4091 0.1047 49 1 7.2314 3.4214 0.8127 50 1 4.0097 -2.1033 0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961129010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:22 Heat of formation + Delta-G solvation = 48.199505 kcal Electronic energy + Delta-G solvation = -30238.293710 eV Core-core repulsion = 26266.567158 eV Total energy + Delta-G solvation = -3971.726552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.82510 -40.07655 -38.30057 -36.72304 -35.19156 -33.54083 -33.01250 -32.27539 -31.03030 -29.21229 -28.89661 -27.47893 -26.04773 -25.01472 -24.33151 -23.64326 -22.74348 -21.18642 -19.81066 -19.70759 -19.45873 -18.38498 -17.21831 -16.75910 -16.42963 -16.03597 -15.97996 -15.62084 -15.23505 -14.72508 -14.49560 -14.44109 -14.02037 -13.81097 -13.75343 -13.54250 -13.35358 -13.07341 -12.96697 -12.89391 -12.25991 -12.14936 -11.99508 -11.74005 -11.44828 -11.15394 -11.08535 -10.97948 -10.82617 -10.78247 -10.72551 -10.58860 -10.55858 -10.08393 -10.06393 -9.94242 -9.75792 -9.65001 -9.58307 -9.19014 -8.69676 -8.54153 -6.75870 -5.65294 -2.98421 0.06272 0.38260 2.43171 2.61266 3.31176 3.42953 3.45720 3.47521 3.49425 3.49747 3.90183 4.33688 4.45875 4.54129 4.72569 4.81877 4.93611 4.95443 4.99622 5.01007 5.06639 5.20718 5.27961 5.33145 5.45385 5.52944 5.56537 5.63563 5.67587 5.76832 5.78179 5.83179 5.97786 6.01655 6.04294 6.11044 6.16685 6.30705 6.36012 6.39012 6.48476 6.52169 6.64570 6.66833 6.82042 7.05095 7.17967 7.44918 7.62825 7.72386 7.83673 7.90009 8.33050 9.28471 9.89235 10.56310 11.46344 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028460 B = 0.002085 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.613814 B =13429.193858 C =14083.271334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.180 3.820 3 C -0.169 4.169 4 C 0.141 3.859 5 C 0.564 3.436 6 O -0.525 6.525 7 N -0.582 5.582 8 C 0.070 3.930 9 C -0.135 4.135 10 C -0.118 4.118 11 C -0.085 4.085 12 H 0.073 0.927 13 C -0.095 4.095 14 H 0.074 0.926 15 C -0.140 4.140 16 C 0.177 3.823 17 N -0.607 5.607 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.145 3.855 27 C 0.114 3.886 28 N -0.492 5.492 29 C 0.294 3.706 30 N -0.510 5.510 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.161 0.839 35 H 0.066 0.934 36 H 0.143 0.857 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.040 0.960 45 H 0.251 0.749 46 H 0.036 0.964 47 H 0.016 0.984 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.021 -23.424 5.659 29.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.032 3.968 3 C -0.192 4.192 4 C -0.005 4.005 5 C 0.349 3.651 6 O -0.401 6.401 7 N -0.313 5.313 8 C -0.052 4.052 9 C -0.173 4.173 10 C -0.155 4.155 11 C -0.104 4.104 12 H 0.091 0.909 13 C -0.115 4.115 14 H 0.092 0.908 15 C -0.179 4.179 16 C 0.053 3.947 17 N -0.333 5.333 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.019 3.981 27 C -0.008 4.008 28 N -0.210 5.210 29 C 0.006 3.994 30 N -0.226 5.226 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.179 0.821 35 H 0.085 0.915 36 H 0.159 0.841 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.033 0.967 48 H 0.114 0.886 49 H 0.089 0.911 50 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -16.705 -23.446 5.747 29.356 hybrid contribution 0.635 1.224 -0.474 1.458 sum -16.070 -22.222 5.274 27.926 Atomic orbital electron populations 1.20846 0.87068 1.04549 1.04154 1.21889 0.98042 0.87676 0.89156 1.22835 0.94512 1.01538 1.00335 1.21751 0.92208 0.92576 0.94014 1.17812 0.82212 0.86829 0.78265 1.90815 1.70632 1.28541 1.50072 1.48018 1.05554 1.11587 1.66156 1.23120 0.99152 0.86307 0.96627 1.22041 0.98401 0.99111 0.97765 1.21630 0.97639 0.93828 1.02420 1.21449 0.96660 0.95108 0.97233 0.90863 1.22312 0.96314 0.93127 0.99725 0.90763 1.22932 0.98835 0.96002 1.00098 1.21128 0.88119 0.91196 0.94293 1.44496 1.28700 1.02613 1.57522 1.19054 1.01001 0.91918 1.23472 0.90556 1.24812 0.99135 0.96330 1.00411 1.69982 1.38303 1.05605 1.43090 0.86126 0.82129 0.78834 0.78723 1.21682 1.21718 1.20746 1.21504 0.95397 0.87465 0.93713 1.21867 0.93580 0.87243 0.98083 1.68400 1.39541 0.98808 1.14238 1.25185 0.86727 0.97109 0.90357 1.68225 1.10481 1.30475 1.13379 0.89195 0.89543 0.89618 0.82120 0.91536 0.84061 0.92006 0.90874 0.91088 0.91802 0.92566 0.92367 0.93771 0.94149 0.93838 0.94613 0.96670 0.88603 0.91060 0.77947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.22 36.00 0.37 -0.10 16 2 C 0.18 1.36 6.83 -82.24 -0.56 0.80 16 3 C -0.17 -1.51 9.41 -38.90 -0.37 -1.88 16 4 C 0.14 1.50 6.61 -82.63 -0.55 0.95 16 5 C 0.56 7.43 7.67 -12.05 -0.09 7.34 16 6 O -0.53 -8.37 15.89 5.38 0.09 -8.29 16 7 N -0.58 -7.17 2.97 -173.39 -0.51 -7.68 16 8 C 0.07 0.70 5.96 -3.48 -0.02 0.68 16 9 C -0.13 -1.34 6.10 -26.38 -0.16 -1.50 16 10 C -0.12 -1.40 4.99 -26.69 -0.13 -1.54 16 11 C -0.08 -1.19 1.84 -90.50 -0.17 -1.35 16 12 H 0.07 1.13 8.11 -51.93 -0.42 0.70 16 13 C -0.09 -1.64 2.56 -88.47 -0.23 -1.87 16 14 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 15 C -0.14 -2.71 5.70 -24.89 -0.14 -2.85 16 16 C 0.18 4.46 5.38 -3.06 -0.02 4.44 16 17 N -0.61 -15.95 3.39 -170.08 -0.58 -16.52 16 18 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -27.81 10.31 55.49 0.57 -27.24 16 22 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.15 3.04 5.67 -2.54 -0.01 3.02 16 27 C 0.11 1.52 5.49 -3.71 -0.02 1.49 16 28 N -0.49 -4.45 6.30 -11.14 -0.07 -4.52 16 29 C 0.29 2.15 12.27 -92.26 -1.13 1.02 16 30 N -0.51 -4.17 10.36 -10.81 -0.11 -4.28 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.25 8.10 -51.93 -0.42 -0.17 16 34 H 0.16 1.31 7.76 -52.49 -0.41 0.90 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.14 1.32 3.99 -82.71 -0.33 0.98 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.90 7.22 -51.93 -0.37 0.52 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.06 8.01 -51.93 -0.42 0.65 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 44 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.04 0.72 8.02 -51.93 -0.42 0.31 16 47 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 48 H 0.10 1.44 6.56 -51.93 -0.34 1.10 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.20 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -33.97 390.70 -11.33 -45.29 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -8.09 Total: -1.80 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -3.48 Total: 1.62 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.70 Total: -60.25 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.97 -11.33 -45.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961129010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.490 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds