Wall clock time and date at job start Wed Apr 1 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38812 * 120.42463 * 2 1 4 4 C 1.39498 * 118.26050 * 180.22601 * 3 2 1 5 5 C 1.48459 * 120.54577 * 179.72432 * 4 3 2 6 6 O 1.21479 * 120.00018 * 8.93106 * 5 4 3 7 7 N 1.34773 * 119.99959 * 188.92800 * 5 4 3 8 8 C 1.46929 * 120.62827 * 7.18129 * 7 5 4 9 9 C 1.53626 * 108.53909 * 126.36996 * 8 7 5 10 10 C 1.53041 * 109.24356 * 54.85848 * 9 8 7 11 11 C 1.53044 * 109.53456 * 298.50853 * 10 9 8 12 12 H 1.08993 * 109.49690 * 301.41255 * 11 10 9 13 13 C 1.53000 * 109.52139 * 181.33364 * 11 10 9 14 14 H 1.09006 * 110.88339 * 297.71747 * 13 11 10 15 15 C 1.55155 * 111.00184 * 173.79531 * 13 11 10 16 16 C 1.54331 * 102.94372 * 206.42088 * 15 13 11 17 17 N 1.47026 * 107.26574 * 22.19574 * 16 15 13 18 18 C 1.36933 * 125.64483 * 181.09700 * 17 16 15 19 19 H 1.08001 * 119.99977 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00269 * 359.95136 * 18 17 16 21 21 N 1.31623 * 119.99839 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00304 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46600 * 90.00303 * 22 20 18 24 24 H 1.48499 * 109.47259 * 210.00298 * 22 20 18 25 25 H 1.48496 * 109.47229 * 330.00736 * 22 20 18 26 26 C 1.47417 * 108.70464 * 1.05423 * 17 16 15 27 27 C 1.46926 * 120.63285 * 187.46412 * 7 5 4 28 28 N 1.33103 * 118.90367 * 359.49876 * 4 3 2 29 29 C 1.31552 * 120.73329 * 0.51644 * 28 4 3 30 30 N 1.31915 * 121.91988 * 359.72904 * 29 28 4 31 31 H 1.08999 * 109.47384 * 90.00067 * 1 2 3 32 32 H 1.09000 * 109.46889 * 210.00294 * 1 2 3 33 33 H 1.09003 * 109.47555 * 329.99666 * 1 2 3 34 34 H 1.07997 * 120.86966 * 359.95775 * 3 2 1 35 35 H 1.09003 * 109.58911 * 246.20073 * 8 7 5 36 36 H 1.08996 * 109.58760 * 6.62932 * 8 7 5 37 37 H 1.08998 * 109.63884 * 294.86337 * 9 8 7 38 38 H 1.09005 * 109.45467 * 174.74114 * 9 8 7 39 39 H 1.08998 * 109.46162 * 178.48930 * 10 9 8 40 40 H 1.09002 * 109.44972 * 58.51851 * 10 9 8 41 41 H 1.08997 * 110.72109 * 324.78540 * 15 13 11 42 42 H 1.09002 * 110.71908 * 88.06415 * 15 13 11 43 43 H 1.08997 * 109.88282 * 262.78267 * 16 15 13 44 44 H 1.08992 * 110.00895 * 141.68303 * 16 15 13 45 45 H 0.97000 * 119.99763 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.37061 * 217.02960 * 26 17 16 47 47 H 1.09001 * 110.46028 * 94.76143 * 26 17 16 48 48 H 1.08998 * 109.58327 * 353.37247 * 27 7 5 49 49 H 1.08998 * 109.58500 * 113.79605 * 27 7 5 50 50 H 1.08007 * 119.04062 * 179.75793 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1970 0.0000 4 6 3.6039 1.1443 -0.0048 5 6 4.4061 2.3935 -0.0112 6 8 3.8604 3.4666 0.1510 7 7 5.7398 2.3369 -0.1970 8 6 6.3933 1.0691 -0.5499 9 6 7.2280 1.2871 -1.8210 10 6 8.1957 2.4511 -1.5955 11 6 7.4020 3.7295 -1.3158 12 1 6.7408 3.9384 -2.1566 13 6 8.3688 4.8996 -1.1233 14 1 9.0143 4.7326 -0.2610 15 6 7.5995 6.2406 -0.9919 16 6 8.6277 7.2790 -1.4883 17 7 9.5965 6.5648 -2.3326 18 6 10.6827 7.1252 -2.9499 19 1 11.3376 6.5125 -3.5517 20 6 10.9419 8.4809 -2.8028 21 7 10.1438 9.2277 -2.0694 22 14 12.4241 9.2453 -3.6443 23 1 12.0353 9.7199 -4.9966 24 1 12.9136 10.3928 -2.8387 25 1 13.5017 8.2309 -3.7666 26 6 9.2053 5.1452 -2.4038 27 6 6.5686 3.5404 -0.0445 28 7 4.2028 -0.0444 0.0009 29 6 3.4955 -1.1535 0.0009 30 7 2.1764 -1.1396 0.0004 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6912 2.1442 -0.0007 35 1 7.0421 0.7527 0.2669 36 1 5.6364 0.3068 -0.7343 37 1 6.5684 1.5191 -2.6571 38 1 7.7932 0.3821 -2.0438 39 1 8.8084 2.5917 -2.4859 40 1 8.8384 2.2290 -0.7437 41 1 6.7137 6.2409 -1.6270 42 1 7.3305 6.4306 0.0472 43 1 9.1389 7.7302 -0.6379 44 1 8.1261 8.0512 -2.0715 45 1 10.3251 10.1750 -1.9662 46 1 10.0895 4.5078 -2.4074 47 1 8.6018 4.9604 -3.2924 48 1 5.9274 4.4091 0.1047 49 1 7.2314 3.4214 0.8127 50 1 4.0097 -2.1033 0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961129010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:20 Heat of formation + Delta-G solvation = 28.973545 kcal Electronic energy + Delta-G solvation = -30239.127410 eV Core-core repulsion = 26266.567158 eV Total energy + Delta-G solvation = -3972.560252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.51362 -41.03895 -39.66626 -38.07883 -35.93894 -34.98265 -33.79351 -33.49264 -32.48934 -30.68650 -29.70719 -28.99712 -27.03254 -26.58289 -25.36225 -24.44191 -23.87237 -22.35220 -21.63151 -20.91053 -20.57212 -19.15574 -18.82294 -17.96457 -17.28528 -17.03562 -16.73052 -16.69163 -16.41378 -16.16891 -15.73656 -15.58908 -15.38028 -15.12744 -14.57288 -14.27155 -14.25399 -14.06128 -13.93858 -13.86326 -13.79346 -13.55583 -13.22844 -13.18848 -12.83445 -12.75321 -12.42516 -12.26666 -12.11609 -12.00353 -11.87063 -11.75938 -11.72081 -11.60848 -11.51952 -11.40681 -11.29820 -11.04043 -10.71814 -10.69882 -9.93609 -9.68796 -8.90188 -7.85135 -5.21135 -0.66386 -0.19151 1.44029 1.46816 1.55478 1.55717 1.71143 2.49090 2.64153 2.75050 3.02391 3.24081 3.32541 3.56278 3.65501 3.71311 3.82746 3.90368 3.94573 4.13965 4.17169 4.25672 4.30600 4.38737 4.43765 4.49364 4.57138 4.66004 4.71057 4.73006 4.78748 4.80300 4.87740 4.90907 4.93923 4.97252 5.05304 5.14213 5.14812 5.19728 5.30920 5.39234 5.41756 5.44825 5.54370 5.65888 5.66367 5.71370 5.76712 6.19574 6.25222 6.78583 6.93344 7.09516 7.77865 8.43383 9.25541 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028460 B = 0.002085 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.613814 B =13429.193858 C =14083.271334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.184 3.816 3 C -0.176 4.176 4 C 0.124 3.876 5 C 0.558 3.442 6 O -0.564 6.564 7 N -0.583 5.583 8 C 0.070 3.930 9 C -0.128 4.128 10 C -0.115 4.115 11 C -0.072 4.072 12 H 0.058 0.942 13 C -0.076 4.076 14 H 0.080 0.920 15 C -0.127 4.127 16 C 0.185 3.815 17 N -0.630 5.630 18 C -0.241 4.241 19 H 0.084 0.916 20 C -0.073 4.073 21 N -0.954 5.954 22 Si 0.982 3.018 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.142 3.858 27 C 0.117 3.883 28 N -0.497 5.497 29 C 0.296 3.704 30 N -0.520 5.520 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.079 0.921 36 H 0.153 0.847 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.010 0.990 44 H 0.000 1.000 45 H 0.246 0.754 46 H 0.046 0.954 47 H 0.017 0.983 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.176 -26.803 5.682 32.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.036 3.964 3 C -0.199 4.199 4 C -0.022 4.022 5 C 0.345 3.655 6 O -0.442 6.442 7 N -0.312 5.312 8 C -0.051 4.051 9 C -0.166 4.166 10 C -0.153 4.153 11 C -0.092 4.092 12 H 0.077 0.923 13 C -0.096 4.096 14 H 0.099 0.901 15 C -0.165 4.165 16 C 0.060 3.940 17 N -0.356 5.356 18 C -0.370 4.370 19 H 0.102 0.898 20 C -0.265 4.265 21 N -0.603 5.603 22 Si 0.809 3.191 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.190 1.190 26 C 0.018 3.982 27 C -0.005 4.005 28 N -0.215 5.215 29 C 0.009 3.991 30 N -0.235 5.235 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.180 0.820 35 H 0.097 0.903 36 H 0.169 0.831 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.029 0.971 44 H 0.018 0.982 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -16.849 -26.892 5.758 32.252 hybrid contribution 0.630 2.208 -0.498 2.349 sum -16.219 -24.684 5.260 30.000 Atomic orbital electron populations 1.20971 0.84782 1.05547 1.05197 1.22365 0.99478 0.86937 0.87639 1.22943 0.94038 1.02331 1.00628 1.21460 0.92542 0.92235 0.95926 1.18227 0.82475 0.87346 0.77484 1.90783 1.71399 1.30178 1.51881 1.48119 1.05435 1.11958 1.65717 1.23319 0.99496 0.85333 0.96967 1.22008 0.97925 0.99243 0.97399 1.21616 0.97825 0.93248 1.02593 1.21278 0.95886 0.94875 0.97161 0.92318 1.22177 0.96122 0.93234 0.98042 0.90119 1.22775 0.97357 0.95459 1.00905 1.20878 0.88701 0.91998 0.92411 1.44845 1.28414 1.05001 1.57370 1.19497 1.01706 0.92446 1.23363 0.89795 1.25736 1.02259 0.96974 1.01543 1.70222 1.40091 1.05393 1.44634 0.85030 0.78917 0.77814 0.77293 1.21386 1.22090 1.19027 1.21682 0.96305 0.84830 0.95430 1.21709 0.93416 0.87423 0.97963 1.68312 1.39740 0.98602 1.14821 1.25909 0.86715 0.97705 0.88772 1.68342 1.10953 1.30560 1.13654 0.87936 0.88851 0.88318 0.82038 0.90269 0.83093 0.92940 0.88254 0.91694 0.90661 0.92238 0.90536 0.97148 0.98207 0.94498 0.93573 0.96545 0.90602 0.89748 0.74472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.22 71.23 0.73 0.05 16 2 C 0.18 2.44 6.83 42.64 0.29 2.73 16 3 C -0.18 -3.00 9.41 22.71 0.21 -2.78 16 4 C 0.12 2.51 6.61 41.98 0.28 2.79 16 5 C 0.56 14.56 7.67 86.97 0.67 15.23 16 6 O -0.56 -18.41 15.89 -3.65 -0.06 -18.47 16 7 N -0.58 -13.65 2.97 -820.78 -2.43 -16.08 16 8 C 0.07 1.21 5.96 86.51 0.52 1.72 16 9 C -0.13 -2.19 6.10 30.82 0.19 -2.00 16 10 C -0.12 -2.48 4.99 30.62 0.15 -2.32 16 11 C -0.07 -1.94 1.84 -10.72 -0.02 -1.96 16 12 H 0.06 1.77 8.11 -2.39 -0.02 1.75 16 13 C -0.08 -2.57 2.56 -9.40 -0.02 -2.60 16 14 H 0.08 2.67 8.14 -2.38 -0.02 2.66 16 15 C -0.13 -4.98 5.70 31.78 0.18 -4.80 16 16 C 0.19 9.74 5.38 86.73 0.47 10.21 16 17 N -0.63 -33.83 3.39 -692.01 -2.35 -36.18 16 18 C -0.24 -13.99 10.28 84.03 0.86 -13.12 16 19 H 0.08 4.61 7.83 -2.91 -0.02 4.58 16 20 C -0.07 -4.29 5.49 84.86 0.47 -3.82 16 21 N -0.95 -59.85 10.31 21.65 0.22 -59.62 16 22 Si 0.98 47.09 29.55 68.60 2.03 49.11 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 C 0.14 5.90 5.67 86.86 0.49 6.39 16 27 C 0.12 3.00 5.49 86.36 0.47 3.48 16 28 N -0.50 -7.94 6.30 -189.15 -1.19 -9.13 16 29 C 0.30 3.52 12.27 180.92 2.22 5.74 16 30 N -0.52 -7.25 10.36 -188.10 -1.95 -9.20 16 31 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.38 8.10 -2.39 -0.02 0.36 16 34 H 0.16 2.61 7.76 -2.91 -0.02 2.59 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.15 2.41 3.99 -63.15 -0.25 2.15 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.06 1.49 7.22 -2.39 -0.02 1.48 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 2.29 8.01 -2.39 -0.02 2.27 16 42 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.01 0.60 7.38 -2.39 -0.02 0.58 16 44 H 0.00 -0.02 7.50 -2.39 -0.02 -0.04 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.05 1.82 8.02 -2.39 -0.02 1.80 16 47 H 0.02 0.69 8.03 -2.39 -0.02 0.68 16 48 H 0.08 2.28 6.56 -2.39 -0.02 2.26 16 49 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.24 0.86 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -76.72 390.70 3.11 -73.61 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.69 Total: 11.03 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 8.15 Total: 14.94 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -7.70 Total: -130.22 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.06 Total: -18.47 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -76.72 3.11 -73.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961129010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.582 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds