Wall clock time and date at job start Wed Apr 1 2020 03:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32168 * 120.53738 * 2 1 4 4 C 1.31853 * 120.96404 * 180.33219 * 3 2 1 5 5 N 1.31885 * 122.09925 * 359.65587 * 4 3 2 6 6 C 1.32133 * 120.96387 * 0.02562 * 5 4 3 7 7 C 1.39924 * 120.53649 * 179.71295 * 2 1 3 8 8 C 1.47826 * 120.93997 * 359.97438 * 7 2 1 9 9 O 1.21549 * 120.00412 * 54.19237 * 8 7 2 10 10 N 1.34786 * 119.99695 * 234.19095 * 8 7 2 11 11 C 1.46916 * 120.63171 * 355.92173 * 10 8 7 12 12 C 1.53195 * 108.78025 * 126.41304 * 11 10 8 13 13 C 1.53047 * 109.30829 * 54.63056 * 12 11 10 14 14 C 1.53040 * 109.53727 * 298.63749 * 13 12 11 15 15 H 1.08996 * 109.52749 * 301.39568 * 14 13 12 16 16 C 1.53005 * 109.49166 * 181.31930 * 14 13 12 17 17 H 1.08995 * 110.91624 * 302.60840 * 16 14 13 18 18 C 1.55157 * 111.00486 * 66.51563 * 16 14 13 19 19 C 1.54325 * 102.94319 * 153.57466 * 18 16 14 20 20 N 1.47292 * 107.30292 * 337.81791 * 19 18 16 21 21 C 1.36941 * 125.79087 * 178.93161 * 20 19 18 22 22 H 1.08001 * 119.99925 * 174.93007 * 21 20 19 23 23 C 1.38817 * 119.99895 * 354.92083 * 21 20 19 24 24 N 1.31622 * 119.99981 * 5.81900 * 23 21 20 25 25 Si 1.86797 * 119.99765 * 185.81741 * 23 21 20 26 26 H 1.48498 * 109.47019 * 94.99742 * 25 23 21 27 27 H 1.48501 * 109.46682 * 214.99668 * 25 23 21 28 28 H 1.48497 * 109.47269 * 334.99520 * 25 23 21 29 29 C 1.47421 * 108.56168 * 358.92357 * 20 19 18 30 30 C 1.46927 * 120.62823 * 175.94293 * 10 8 7 31 31 H 1.09002 * 109.46939 * 274.64924 * 1 2 3 32 32 H 1.09001 * 109.47061 * 34.64781 * 1 2 3 33 33 H 1.09000 * 109.47419 * 154.65163 * 1 2 3 34 34 H 1.08004 * 118.94734 * 179.68056 * 4 3 2 35 35 H 1.08000 * 120.53521 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.58681 * 246.20164 * 11 10 8 37 37 H 1.09002 * 109.58761 * 6.48175 * 11 10 8 38 38 H 1.08992 * 109.50171 * 174.58465 * 12 11 10 39 39 H 1.09005 * 109.49422 * 294.68759 * 12 11 10 40 40 H 1.09000 * 109.45463 * 178.61767 * 13 12 11 41 41 H 1.08995 * 109.45804 * 58.66134 * 13 12 11 42 42 H 1.09001 * 110.71876 * 271.93474 * 18 16 14 43 43 H 1.09000 * 110.72220 * 35.21041 * 18 16 14 44 44 H 1.09005 * 109.87990 * 97.22138 * 19 18 16 45 45 H 1.08998 * 109.88318 * 218.23075 * 19 18 16 46 46 H 0.96996 * 120.00164 * 180.02562 * 24 23 21 47 47 H 1.09001 * 110.36318 * 265.26756 * 29 20 19 48 48 H 1.08996 * 110.36944 * 143.05325 * 29 20 19 49 49 H 1.08994 * 109.58828 * 113.79919 * 30 10 8 50 50 H 1.08998 * 109.58827 * 353.36932 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4970 1.1482 -0.0066 5 7 4.2062 0.0362 -0.0067 6 6 3.6164 -1.1462 -0.0006 7 6 2.2179 -1.2052 0.0060 8 6 1.5120 -2.5040 0.0131 9 8 0.6804 -2.7484 -0.8389 10 7 1.7907 -3.4172 0.9645 11 6 2.8553 -3.1735 1.9472 12 6 2.2764 -3.3480 3.3548 13 6 1.6224 -4.7272 3.4656 14 6 0.4773 -4.8332 2.4558 15 1 -0.2526 -4.0471 2.6488 16 6 -0.1968 -6.2002 2.5901 17 1 0.5235 -7.0052 2.4449 18 6 -0.9131 -6.3349 3.9598 19 6 -2.0296 -7.3592 3.6667 20 7 -2.2745 -7.3368 2.2145 21 6 -3.1775 -8.1167 1.5424 22 1 -3.3396 -7.9663 0.4853 23 6 -3.8844 -9.1007 2.2199 24 7 -3.7730 -9.2093 3.5269 25 14 -4.9938 -10.2707 1.2767 26 1 -4.2488 -11.5174 0.9667 27 1 -6.1842 -10.5976 2.1021 28 1 -5.4302 -9.6272 0.0115 29 6 -1.3841 -6.3330 1.6039 30 6 1.0359 -4.6756 1.0381 31 1 -0.3633 0.0833 1.0243 32 1 -0.3633 0.8454 -0.5843 33 1 -0.3634 -0.9287 -0.4400 34 1 4.0127 2.0972 -0.0116 35 1 4.2039 -2.0524 -0.0012 36 1 3.6646 -3.8873 1.7938 37 1 3.2358 -2.1588 1.8295 38 1 3.0766 -3.2646 4.0902 39 1 1.5299 -2.5755 3.5395 40 1 1.2313 -4.8636 4.4738 41 1 2.3636 -5.4984 3.2565 42 1 -0.2284 -6.7170 4.7170 43 1 -1.3374 -5.3797 4.2687 44 1 -1.7089 -8.3550 3.9728 45 1 -2.9374 -7.0814 4.2023 46 1 -4.2666 -9.8971 4.0003 47 1 -1.9013 -5.3789 1.5023 48 1 -1.0329 -6.6787 0.6317 49 1 1.6967 -5.5120 0.8106 50 1 0.2142 -4.6513 0.3223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961149534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:29 Heat of formation + Delta-G solvation = 35.128475 kcal Electronic energy + Delta-G solvation = -30740.074090 eV Core-core repulsion = 26767.780736 eV Total energy + Delta-G solvation = -3972.293354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.80693 -40.15811 -38.36377 -36.81232 -34.87264 -33.97459 -32.92622 -32.34351 -31.14640 -29.32344 -28.88123 -27.12730 -26.42004 -24.72136 -24.63234 -23.43913 -22.76256 -21.33115 -19.92112 -19.59425 -19.54676 -18.39244 -17.54484 -17.27125 -16.84175 -16.36979 -15.60856 -15.21468 -14.87595 -14.69179 -14.60696 -14.22800 -14.20739 -13.90151 -13.69011 -13.55166 -13.38091 -13.16556 -13.10527 -12.51592 -12.42523 -12.18579 -12.06634 -12.00285 -11.81220 -11.34469 -11.13986 -11.05002 -10.93720 -10.84545 -10.74470 -10.64544 -10.24164 -10.07784 -9.98259 -9.89444 -9.79976 -9.75466 -9.72904 -9.56916 -8.84206 -8.55265 -6.78317 -5.68995 -3.00932 0.14188 0.54690 2.26194 2.63810 3.24407 3.42216 3.47622 3.49486 3.57568 3.63608 3.89560 4.01041 4.42877 4.49620 4.53862 4.66571 4.71361 4.83119 4.87316 5.03598 5.04714 5.12396 5.23917 5.34436 5.41363 5.46836 5.47537 5.57166 5.61311 5.65874 5.66433 5.71391 5.83210 5.88406 5.93166 5.96798 6.02616 6.19592 6.21733 6.35280 6.42530 6.43028 6.56984 6.60715 6.75850 6.99644 7.06219 7.55418 7.59037 7.66915 7.79722 7.85822 8.29577 9.25556 9.86434 10.53552 11.43331 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002427 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.166244 B =11536.040721 C =12287.980623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.227 3.773 3 N -0.521 5.521 4 C 0.311 3.689 5 N -0.525 5.525 6 C 0.181 3.819 7 C -0.233 4.233 8 C 0.570 3.430 9 O -0.521 6.521 10 N -0.599 5.599 11 C 0.100 3.900 12 C -0.134 4.134 13 C -0.115 4.115 14 C -0.086 4.086 15 H 0.074 0.926 16 C -0.095 4.095 17 H 0.075 0.925 18 C -0.135 4.135 19 C 0.176 3.824 20 N -0.606 5.606 21 C -0.226 4.226 22 H 0.077 0.923 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.140 3.860 30 C 0.116 3.884 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.201 0.799 35 H 0.173 0.827 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.037 0.963 46 H 0.251 0.749 47 H 0.017 0.983 48 H 0.037 0.963 49 H 0.072 0.928 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.173 18.506 -1.334 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.081 3.919 3 N -0.235 5.235 4 C 0.024 3.976 5 N -0.239 5.239 6 C 0.015 3.985 7 C -0.241 4.241 8 C 0.356 3.644 9 O -0.397 6.397 10 N -0.332 5.332 11 C -0.023 4.023 12 C -0.172 4.172 13 C -0.152 4.152 14 C -0.106 4.106 15 H 0.092 0.908 16 C -0.115 4.115 17 H 0.093 0.907 18 C -0.174 4.174 19 C 0.051 3.949 20 N -0.333 5.333 21 C -0.354 4.354 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.014 3.986 30 C -0.006 4.006 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.218 0.782 35 H 0.190 0.810 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.034 0.966 48 H 0.055 0.945 49 H 0.091 0.909 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.027 19.073 -1.753 26.303 hybrid contribution -0.841 -1.386 -0.299 1.648 sum 17.186 17.688 -2.051 24.747 Atomic orbital electron populations 1.21095 0.86926 1.06030 1.04268 1.21871 0.97959 0.86461 0.85644 1.68396 1.10302 1.29569 1.15232 1.25201 0.86737 0.97268 0.88370 1.68476 1.41333 0.98888 1.15212 1.23467 0.90488 0.96808 0.87766 1.21617 0.96662 0.96303 1.09490 1.17811 0.82271 0.82698 0.81660 1.90820 1.33718 1.78279 1.36874 1.48098 1.36094 1.19105 1.29873 1.21971 0.89804 1.01766 0.88794 1.21919 1.00841 0.98874 0.95563 1.21588 0.97552 0.95914 1.00164 1.21482 0.96940 0.98666 0.93517 0.90767 1.22320 0.97000 0.94508 0.97660 0.90664 1.22877 0.98751 1.00246 0.95494 1.21182 0.93628 0.95426 0.84659 1.44540 1.42873 1.42869 1.02988 1.19080 1.14083 1.09502 0.92751 0.90467 1.24813 1.00562 0.99327 0.95824 1.69976 1.45692 1.35560 1.05735 0.86127 0.79811 0.81313 0.78739 1.21666 1.21809 1.20627 1.21582 0.89686 0.92627 0.94717 1.21869 0.96529 0.83579 0.98590 0.89229 0.89278 0.87974 0.78212 0.80956 0.90559 0.90372 0.90626 0.91549 0.90976 0.91625 0.92405 0.92703 0.93488 0.94447 0.93853 0.96561 0.94466 0.90937 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.93 36.01 0.36 -0.84 16 2 C 0.23 2.36 6.86 -81.82 -0.56 1.80 16 3 N -0.52 -5.15 10.36 -10.48 -0.11 -5.26 16 4 C 0.31 2.54 12.27 -92.03 -1.13 1.41 16 5 N -0.53 -4.62 10.42 -14.24 -0.15 -4.77 16 6 C 0.18 1.53 8.76 -16.77 -0.15 1.39 16 7 C -0.23 -2.37 4.89 -104.69 -0.51 -2.89 16 8 C 0.57 6.81 6.65 -12.33 -0.08 6.73 16 9 O -0.52 -8.05 14.64 5.32 0.08 -7.97 16 10 N -0.60 -6.25 2.97 -173.89 -0.52 -6.76 16 11 C 0.10 0.75 5.61 -3.71 -0.02 0.73 16 12 C -0.13 -1.04 6.08 -26.61 -0.16 -1.20 16 13 C -0.11 -1.11 5.04 -26.69 -0.13 -1.25 16 14 C -0.09 -1.07 1.85 -90.50 -0.17 -1.23 16 15 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 16 C -0.09 -1.52 2.56 -88.47 -0.23 -1.75 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 18 C -0.14 -2.40 5.58 -24.90 -0.14 -2.54 16 19 C 0.18 4.24 5.40 -2.92 -0.02 4.23 16 20 N -0.61 -15.59 3.40 -169.85 -0.58 -16.17 16 21 C -0.23 -6.39 10.27 -15.06 -0.15 -6.54 16 22 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 23 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 24 N -0.92 -27.35 10.37 55.49 0.58 -26.77 16 25 Si 0.91 22.38 29.56 -169.99 -5.02 17.36 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 C 0.14 2.86 5.74 -2.53 -0.01 2.84 16 30 C 0.12 1.39 5.40 -3.71 -0.02 1.37 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.16 5.72 -51.93 -0.30 0.86 16 34 H 0.20 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.17 1.05 7.46 -52.49 -0.39 0.65 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.53 4.75 -51.93 -0.25 0.28 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.73 7.46 -51.93 -0.39 0.34 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 43 H 0.05 0.93 8.01 -51.93 -0.42 0.51 16 44 H 0.05 1.26 7.28 -51.93 -0.38 0.88 16 45 H 0.04 1.01 7.64 -51.93 -0.40 0.61 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.02 0.34 8.04 -51.93 -0.42 -0.07 16 48 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.10 1.44 6.44 -51.93 -0.33 1.11 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -33.54 387.91 -10.98 -44.52 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.88 Total: -1.92 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.22 Total: 1.89 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.78 Total: -59.73 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.08 Total: -7.97 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.54 -10.98 -44.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961149534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.647 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds