Wall clock time and date at job start Wed Apr 1 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32168 * 120.53738 * 2 1 4 4 C 1.31853 * 120.96404 * 180.33219 * 3 2 1 5 5 N 1.31885 * 122.09925 * 359.65587 * 4 3 2 6 6 C 1.32133 * 120.96387 * 0.02562 * 5 4 3 7 7 C 1.39924 * 120.53649 * 179.71295 * 2 1 3 8 8 C 1.47826 * 120.93997 * 359.97438 * 7 2 1 9 9 O 1.21549 * 120.00412 * 54.19237 * 8 7 2 10 10 N 1.34786 * 119.99695 * 234.19095 * 8 7 2 11 11 C 1.46916 * 120.63171 * 355.92173 * 10 8 7 12 12 C 1.53195 * 108.78025 * 126.41304 * 11 10 8 13 13 C 1.53047 * 109.30829 * 54.63056 * 12 11 10 14 14 C 1.53040 * 109.53727 * 298.63749 * 13 12 11 15 15 H 1.08996 * 109.52749 * 301.39568 * 14 13 12 16 16 C 1.53005 * 109.49166 * 181.31930 * 14 13 12 17 17 H 1.08995 * 110.91624 * 302.60840 * 16 14 13 18 18 C 1.55157 * 111.00486 * 66.51563 * 16 14 13 19 19 C 1.54325 * 102.94319 * 153.57466 * 18 16 14 20 20 N 1.47292 * 107.30292 * 337.81791 * 19 18 16 21 21 C 1.36941 * 125.79087 * 178.93161 * 20 19 18 22 22 H 1.08001 * 119.99925 * 174.93007 * 21 20 19 23 23 C 1.38817 * 119.99895 * 354.92083 * 21 20 19 24 24 N 1.31622 * 119.99981 * 5.81900 * 23 21 20 25 25 Si 1.86797 * 119.99765 * 185.81741 * 23 21 20 26 26 H 1.48498 * 109.47019 * 94.99742 * 25 23 21 27 27 H 1.48501 * 109.46682 * 214.99668 * 25 23 21 28 28 H 1.48497 * 109.47269 * 334.99520 * 25 23 21 29 29 C 1.47421 * 108.56168 * 358.92357 * 20 19 18 30 30 C 1.46927 * 120.62823 * 175.94293 * 10 8 7 31 31 H 1.09002 * 109.46939 * 274.64924 * 1 2 3 32 32 H 1.09001 * 109.47061 * 34.64781 * 1 2 3 33 33 H 1.09000 * 109.47419 * 154.65163 * 1 2 3 34 34 H 1.08004 * 118.94734 * 179.68056 * 4 3 2 35 35 H 1.08000 * 120.53521 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.58681 * 246.20164 * 11 10 8 37 37 H 1.09002 * 109.58761 * 6.48175 * 11 10 8 38 38 H 1.08992 * 109.50171 * 174.58465 * 12 11 10 39 39 H 1.09005 * 109.49422 * 294.68759 * 12 11 10 40 40 H 1.09000 * 109.45463 * 178.61767 * 13 12 11 41 41 H 1.08995 * 109.45804 * 58.66134 * 13 12 11 42 42 H 1.09001 * 110.71876 * 271.93474 * 18 16 14 43 43 H 1.09000 * 110.72220 * 35.21041 * 18 16 14 44 44 H 1.09005 * 109.87990 * 97.22138 * 19 18 16 45 45 H 1.08998 * 109.88318 * 218.23075 * 19 18 16 46 46 H 0.96996 * 120.00164 * 180.02562 * 24 23 21 47 47 H 1.09001 * 110.36318 * 265.26756 * 29 20 19 48 48 H 1.08996 * 110.36944 * 143.05325 * 29 20 19 49 49 H 1.08994 * 109.58828 * 113.79919 * 30 10 8 50 50 H 1.08998 * 109.58827 * 353.36932 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4970 1.1482 -0.0066 5 7 4.2062 0.0362 -0.0067 6 6 3.6164 -1.1462 -0.0006 7 6 2.2179 -1.2052 0.0060 8 6 1.5120 -2.5040 0.0131 9 8 0.6804 -2.7484 -0.8389 10 7 1.7907 -3.4172 0.9645 11 6 2.8553 -3.1735 1.9472 12 6 2.2764 -3.3480 3.3548 13 6 1.6224 -4.7272 3.4656 14 6 0.4773 -4.8332 2.4558 15 1 -0.2526 -4.0471 2.6488 16 6 -0.1968 -6.2002 2.5901 17 1 0.5235 -7.0052 2.4449 18 6 -0.9131 -6.3349 3.9598 19 6 -2.0296 -7.3592 3.6667 20 7 -2.2745 -7.3368 2.2145 21 6 -3.1775 -8.1167 1.5424 22 1 -3.3396 -7.9663 0.4853 23 6 -3.8844 -9.1007 2.2199 24 7 -3.7730 -9.2093 3.5269 25 14 -4.9938 -10.2707 1.2767 26 1 -4.2488 -11.5174 0.9667 27 1 -6.1842 -10.5976 2.1021 28 1 -5.4302 -9.6272 0.0115 29 6 -1.3841 -6.3330 1.6039 30 6 1.0359 -4.6756 1.0381 31 1 -0.3633 0.0833 1.0243 32 1 -0.3633 0.8454 -0.5843 33 1 -0.3634 -0.9287 -0.4400 34 1 4.0127 2.0972 -0.0116 35 1 4.2039 -2.0524 -0.0012 36 1 3.6646 -3.8873 1.7938 37 1 3.2358 -2.1588 1.8295 38 1 3.0766 -3.2646 4.0902 39 1 1.5299 -2.5755 3.5395 40 1 1.2313 -4.8636 4.4738 41 1 2.3636 -5.4984 3.2565 42 1 -0.2284 -6.7170 4.7170 43 1 -1.3374 -5.3797 4.2687 44 1 -1.7089 -8.3550 3.9728 45 1 -2.9374 -7.0814 4.2023 46 1 -4.2666 -9.8971 4.0003 47 1 -1.9013 -5.3789 1.5023 48 1 -1.0329 -6.6787 0.6317 49 1 1.6967 -5.5120 0.8106 50 1 0.2142 -4.6513 0.3223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961149534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:28 Heat of formation + Delta-G solvation = 15.086603 kcal Electronic energy + Delta-G solvation = -30740.943171 eV Core-core repulsion = 26767.780736 eV Total energy + Delta-G solvation = -3973.162435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.53204 -41.03586 -39.62797 -38.08075 -35.61953 -35.25479 -34.07105 -33.36804 -32.44067 -30.90067 -29.84703 -28.60788 -27.27468 -26.42985 -25.45163 -24.30286 -23.74138 -22.33600 -21.71805 -20.89241 -20.43844 -19.13674 -18.83521 -18.29793 -17.88580 -17.31187 -16.88843 -16.49160 -16.15713 -15.84287 -15.56786 -15.50434 -15.27562 -14.89391 -14.73617 -14.33319 -14.16278 -14.04136 -14.03161 -13.93070 -13.81797 -13.53550 -13.31809 -13.28875 -12.89549 -12.79496 -12.74957 -12.23361 -12.16827 -12.06859 -11.93423 -11.81546 -11.70263 -11.62720 -11.45775 -11.35604 -11.07003 -10.96818 -10.70092 -10.58733 -10.43628 -9.71122 -8.89042 -7.87055 -5.21232 -0.54617 -0.14352 1.38665 1.43820 1.45640 1.54769 1.81498 2.48456 2.56544 2.91628 3.05046 3.22443 3.28206 3.30606 3.61367 3.64832 3.78562 3.86857 3.90268 4.04915 4.14085 4.21396 4.29134 4.33551 4.35963 4.41380 4.51353 4.54837 4.59887 4.68336 4.70620 4.78457 4.83189 4.89231 4.92031 4.95884 4.97634 5.10723 5.13932 5.17266 5.23876 5.35809 5.40152 5.44246 5.48385 5.56748 5.68813 5.74081 5.79453 6.20172 6.23274 6.89305 6.92657 7.10136 7.77885 8.43224 9.23908 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002427 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.166244 B =11536.040721 C =12287.980623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.216 3.784 3 N -0.535 5.535 4 C 0.313 3.687 5 N -0.531 5.531 6 C 0.192 3.808 7 C -0.245 4.245 8 C 0.570 3.430 9 O -0.566 6.566 10 N -0.594 5.594 11 C 0.096 3.904 12 C -0.128 4.128 13 C -0.111 4.111 14 C -0.074 4.074 15 H 0.061 0.939 16 C -0.075 4.075 17 H 0.082 0.918 18 C -0.118 4.118 19 C 0.181 3.819 20 N -0.630 5.630 21 C -0.244 4.244 22 H 0.077 0.923 23 C -0.066 4.066 24 N -0.950 5.950 25 Si 0.977 3.023 26 H -0.285 1.285 27 H -0.293 1.293 28 H -0.270 1.270 29 C 0.135 3.865 30 C 0.119 3.881 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.234 0.766 35 H 0.199 0.801 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.014 0.986 45 H -0.003 1.003 46 H 0.247 0.753 47 H 0.011 0.989 48 H 0.036 0.964 49 H 0.086 0.914 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.257 19.738 -1.044 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.070 3.930 3 N -0.249 5.249 4 C 0.027 3.973 5 N -0.244 5.244 6 C 0.025 3.975 7 C -0.253 4.253 8 C 0.357 3.643 9 O -0.446 6.446 10 N -0.325 5.325 11 C -0.025 4.025 12 C -0.166 4.166 13 C -0.148 4.148 14 C -0.093 4.093 15 H 0.079 0.921 16 C -0.095 4.095 17 H 0.100 0.900 18 C -0.156 4.156 19 C 0.056 3.944 20 N -0.356 5.356 21 C -0.373 4.373 22 H 0.095 0.905 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.805 3.195 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.195 1.195 29 C 0.010 3.990 30 C -0.003 4.003 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.250 0.750 35 H 0.216 0.784 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.032 0.968 45 H 0.016 0.984 46 H 0.056 0.944 47 H 0.029 0.971 48 H 0.055 0.945 49 H 0.104 0.896 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.155 20.339 -1.454 29.382 hybrid contribution -1.798 -1.707 -0.412 2.513 sum 19.357 18.632 -1.866 26.932 Atomic orbital electron populations 1.21029 0.87138 1.05123 1.04722 1.21974 0.98213 0.86992 0.85865 1.68451 1.11206 1.29207 1.16075 1.25914 0.86300 0.98466 0.86590 1.68598 1.41207 0.99076 1.15564 1.23848 0.89760 0.97741 0.86153 1.21467 0.97420 0.95088 1.11300 1.18078 0.81679 0.83307 0.81235 1.90799 1.35812 1.79175 1.38820 1.48127 1.36247 1.18076 1.30024 1.22253 0.89331 1.03257 0.87698 1.21893 1.01296 0.97077 0.96327 1.21572 0.96610 0.97775 0.98888 1.21318 0.97636 0.95506 0.94880 0.92079 1.22183 0.95396 0.97177 0.94733 0.89981 1.22723 0.97045 0.98703 0.97160 1.20995 0.94107 0.95612 0.83713 1.44895 1.43300 1.43442 1.03998 1.19445 1.14705 1.10033 0.93088 0.90482 1.25661 1.02431 1.01048 0.96767 1.70196 1.46635 1.35978 1.07087 0.85081 0.77701 0.79044 0.77672 1.21139 1.21985 1.19501 1.21756 0.90578 0.90844 0.95793 1.21678 0.96237 0.84956 0.97450 0.88383 0.88541 0.90149 0.74958 0.78443 0.87961 0.89273 0.87858 0.92550 0.90889 0.90185 0.89599 0.91650 0.96800 0.98449 0.94379 0.97137 0.94547 0.89578 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.93 71.24 0.71 -1.68 16 2 C 0.22 4.31 6.86 42.92 0.29 4.61 16 3 N -0.53 -9.70 10.36 -187.06 -1.94 -11.64 16 4 C 0.31 4.29 12.27 180.84 2.22 6.51 16 5 N -0.53 -7.76 10.42 -198.97 -2.07 -9.84 16 6 C 0.19 2.72 8.76 85.07 0.74 3.47 16 7 C -0.25 -4.67 4.89 -19.91 -0.10 -4.77 16 8 C 0.57 13.34 6.65 86.78 0.58 13.92 16 9 O -0.57 -18.14 14.64 -3.87 -0.06 -18.20 16 10 N -0.59 -11.35 2.97 -822.35 -2.44 -13.79 16 11 C 0.10 1.08 5.61 86.37 0.48 1.56 16 12 C -0.13 -1.49 6.08 30.68 0.19 -1.30 16 13 C -0.11 -1.76 5.04 30.62 0.15 -1.60 16 14 C -0.07 -1.70 1.85 -10.71 -0.02 -1.72 16 15 H 0.06 1.60 8.11 -2.39 -0.02 1.58 16 16 C -0.08 -2.34 2.56 -9.40 -0.02 -2.36 16 17 H 0.08 2.49 8.14 -2.39 -0.02 2.48 16 18 C -0.12 -4.10 5.58 31.78 0.18 -3.92 16 19 C 0.18 9.05 5.40 86.68 0.47 9.51 16 20 N -0.63 -33.49 3.40 -691.30 -2.35 -35.85 16 21 C -0.24 -14.22 10.27 84.03 0.86 -13.35 16 22 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 23 C -0.07 -3.88 5.48 84.86 0.47 -3.41 16 24 N -0.95 -58.48 10.37 21.65 0.22 -58.26 16 25 Si 0.98 47.04 29.56 68.60 2.03 49.06 16 26 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 29 C 0.14 5.64 5.74 86.86 0.50 6.14 16 30 C 0.12 2.74 5.40 86.36 0.47 3.20 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.94 5.72 -2.39 -0.01 1.93 16 34 H 0.23 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.20 1.66 7.46 -2.91 -0.02 1.64 16 36 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 0.86 4.75 -2.39 -0.01 0.85 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.07 1.20 7.46 -2.39 -0.02 1.18 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 2.53 8.11 -2.39 -0.02 2.52 16 43 H 0.06 2.14 8.01 -2.39 -0.02 2.12 16 44 H 0.01 0.77 7.28 -2.38 -0.02 0.75 16 45 H 0.00 -0.16 7.64 -2.39 -0.02 -0.18 16 46 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 47 H 0.01 0.46 8.04 -2.39 -0.02 0.44 16 48 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.07 2.05 6.44 -2.39 -0.02 2.03 16 Total: -1.00 -77.26 387.91 2.49 -74.78 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.94 Total: 8.92 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 8.16 Total: 14.81 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -8.59 Total: -129.37 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.06 Total: -18.20 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -77.26 2.49 -74.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961149534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.862 kcal (2) G-P(sol) polarization free energy of solvation -77.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds