Wall clock time and date at job start Wed Apr 1 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32157 * 120.53622 * 2 1 4 4 C 1.31854 * 120.96768 * 179.97438 * 3 2 1 5 5 N 1.31883 * 122.09893 * 0.02562 * 4 3 2 6 6 C 1.32140 * 120.95924 * 359.69185 * 5 4 3 7 7 C 1.39925 * 120.53827 * 179.97438 * 2 1 3 8 8 C 1.47832 * 120.94096 * 0.02562 * 7 2 1 9 9 O 1.21558 * 120.00193 * 306.41269 * 8 7 2 10 10 N 1.34774 * 120.00120 * 126.40395 * 8 7 2 11 11 C 1.46930 * 120.63082 * 354.25525 * 10 8 7 12 12 C 1.53192 * 108.77315 * 233.58190 * 11 10 8 13 13 C 1.53042 * 109.31198 * 305.36301 * 12 11 10 14 14 C 1.53038 * 109.53956 * 61.36676 * 13 12 11 15 15 H 1.09006 * 109.52134 * 58.60043 * 14 13 12 16 16 C 1.52996 * 109.49687 * 178.67877 * 14 13 12 17 17 H 1.08999 * 110.63927 * 62.98804 * 16 14 13 18 18 C 1.55155 * 110.72308 * 299.83687 * 16 14 13 19 19 C 1.54910 * 101.58082 * 206.13337 * 18 16 14 20 20 N 1.47421 * 104.83162 * 37.01334 * 19 18 16 21 21 C 1.36937 * 125.64780 * 155.90501 * 20 19 18 22 22 H 1.08001 * 119.99784 * 179.97438 * 21 20 19 23 23 C 1.38817 * 119.99911 * 359.97197 * 21 20 19 24 24 N 1.31613 * 119.99873 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99774 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47171 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46853 * 120.00460 * 25 23 21 28 28 H 1.48498 * 109.47126 * 239.99922 * 25 23 21 29 29 C 1.47020 * 108.70578 * 335.86941 * 20 19 18 30 30 C 1.46930 * 120.63020 * 174.22458 * 10 8 7 31 31 H 1.08998 * 109.47318 * 274.89882 * 1 2 3 32 32 H 1.09001 * 109.47444 * 34.89878 * 1 2 3 33 33 H 1.08998 * 109.47381 * 154.90082 * 1 2 3 34 34 H 1.08001 * 118.95436 * 179.97438 * 4 3 2 35 35 H 1.08007 * 120.53493 * 180.31356 * 6 5 4 36 36 H 1.09002 * 109.58331 * 353.36922 * 11 10 8 37 37 H 1.09001 * 109.58548 * 113.79313 * 11 10 8 38 38 H 1.08999 * 109.49741 * 65.31434 * 12 11 10 39 39 H 1.08994 * 109.49206 * 185.41288 * 12 11 10 40 40 H 1.09002 * 109.45799 * 301.34550 * 13 12 11 41 41 H 1.09000 * 109.45505 * 181.39026 * 13 12 11 42 42 H 1.09001 * 111.00605 * 324.21341 * 18 16 14 43 43 H 1.09001 * 111.00022 * 88.02706 * 18 16 14 44 44 H 1.09005 * 110.36123 * 155.85359 * 19 18 16 45 45 H 1.08996 * 110.36932 * 278.16929 * 19 18 16 46 46 H 0.97001 * 119.99941 * 179.97438 * 24 23 21 47 47 H 1.09004 * 109.88178 * 241.64588 * 29 20 19 48 48 H 1.08991 * 109.88480 * 120.47553 * 29 20 19 49 49 H 1.08996 * 109.58674 * 6.63237 * 30 10 8 50 50 H 1.08999 * 109.58676 * 246.20711 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1383 0.0000 4 6 3.4969 1.1482 0.0005 5 7 4.2061 0.0363 0.0005 6 6 3.6163 -1.1462 0.0061 7 6 2.2180 -1.2052 0.0005 8 6 1.5121 -2.5041 0.0006 9 8 0.6725 -2.7396 0.8475 10 7 1.7993 -3.4271 -0.9385 11 6 2.7177 -3.1124 -2.0414 12 6 2.0207 -3.4276 -3.3686 13 6 1.5322 -4.8779 -3.3519 14 6 0.5205 -5.0642 -2.2188 15 1 -0.3162 -4.3803 -2.3615 16 6 0.0082 -6.5058 -2.2236 17 1 0.8224 -7.2035 -2.0280 18 6 -0.6870 -6.8370 -3.5706 19 6 -1.6673 -7.9591 -3.1470 20 7 -2.1350 -7.5651 -1.8057 21 6 -3.3120 -7.9551 -1.2244 22 1 -3.5646 -7.6105 -0.2325 23 6 -4.1804 -8.7933 -1.9102 24 7 -3.8724 -9.2135 -3.1187 25 14 -5.7856 -9.3259 -1.1170 26 1 -5.8945 -8.7208 0.2348 27 1 -6.9256 -8.8737 -1.9545 28 1 -5.8133 -10.8061 -1.0010 29 6 -1.1283 -6.6848 -1.1950 30 6 1.2005 -4.7675 -0.8785 31 1 -0.3634 0.0878 1.0239 32 1 -0.3634 0.8428 -0.5879 33 1 -0.3634 -0.9306 -0.4359 34 1 4.0127 2.0971 0.0001 35 1 4.2039 -2.0524 0.0112 36 1 2.9796 -2.0548 -2.0083 37 1 3.6198 -3.7174 -1.9496 38 1 1.1702 -2.7588 -3.5007 39 1 2.7235 -3.2899 -4.1902 40 1 2.3800 -5.5448 -3.1950 41 1 1.0576 -5.1121 -4.3048 42 1 -1.2265 -5.9714 -3.9550 43 1 0.0334 -7.2024 -4.3025 44 1 -2.5061 -8.0119 -3.8411 45 1 -1.1502 -8.9176 -3.1021 46 1 -4.4790 -9.7996 -3.5978 47 1 -0.7373 -7.1431 -0.2865 48 1 -1.5737 -5.7175 -0.9626 49 1 0.4613 -4.8020 -0.0782 50 1 1.9788 -5.5074 -0.6920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961149536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:32 Heat of formation + Delta-G solvation = 14.739720 kcal Electronic energy + Delta-G solvation = -30745.120076 eV Core-core repulsion = 26771.942598 eV Total energy + Delta-G solvation = -3973.177477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.51548 -41.05222 -39.64343 -38.06302 -35.60940 -35.29247 -34.07210 -33.35103 -32.45336 -30.88237 -29.85070 -28.63625 -27.26983 -26.41136 -25.48221 -24.22149 -23.76721 -22.38709 -21.73998 -20.80880 -20.44734 -19.10179 -18.87540 -18.33306 -17.87299 -17.32279 -16.98669 -16.50952 -16.16685 -15.76128 -15.61075 -15.42987 -15.25108 -14.89166 -14.61252 -14.38964 -14.25566 -14.15412 -14.10118 -13.91664 -13.72385 -13.42490 -13.35628 -13.27239 -12.94135 -12.79126 -12.72784 -12.28088 -12.16428 -12.06660 -11.94844 -11.82600 -11.73702 -11.62483 -11.41846 -11.28354 -11.09862 -11.01163 -10.75646 -10.60546 -10.44096 -9.71222 -8.88390 -7.79010 -5.22907 -0.55224 -0.14332 1.40209 1.43879 1.44749 1.55469 1.80649 2.47839 2.57005 2.89459 3.05193 3.22616 3.28165 3.29755 3.61457 3.70450 3.77626 3.82059 3.90737 4.05127 4.14182 4.21627 4.28911 4.32941 4.33901 4.41491 4.50746 4.56790 4.59695 4.66488 4.70935 4.76366 4.82728 4.88357 4.90088 4.92156 4.99814 5.10892 5.13646 5.20061 5.22332 5.36191 5.40069 5.44428 5.47804 5.55635 5.69802 5.73594 5.83382 6.23111 6.31773 6.88821 6.92743 7.11100 7.78881 8.42299 9.22741 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.002486 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.061770 B =11258.858360 C =12202.037429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.214 3.786 3 N -0.534 5.534 4 C 0.314 3.686 5 N -0.530 5.530 6 C 0.195 3.805 7 C -0.244 4.244 8 C 0.569 3.431 9 O -0.567 6.567 10 N -0.596 5.596 11 C 0.101 3.899 12 C -0.129 4.129 13 C -0.110 4.110 14 C -0.075 4.075 15 H 0.051 0.949 16 C -0.075 4.075 17 H 0.089 0.911 18 C -0.117 4.117 19 C 0.150 3.850 20 N -0.629 5.629 21 C -0.240 4.240 22 H 0.074 0.926 23 C -0.067 4.067 24 N -0.948 5.948 25 Si 0.979 3.021 26 H -0.270 1.270 27 H -0.289 1.289 28 H -0.289 1.289 29 C 0.136 3.864 30 C 0.119 3.881 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.235 0.765 35 H 0.198 0.802 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.069 0.931 45 H -0.013 1.013 46 H 0.247 0.753 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.066 0.934 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.359 19.338 -0.426 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.068 3.932 3 N -0.249 5.249 4 C 0.028 3.972 5 N -0.244 5.244 6 C 0.028 3.972 7 C -0.252 4.252 8 C 0.355 3.645 9 O -0.446 6.446 10 N -0.327 5.327 11 C -0.020 4.020 12 C -0.167 4.167 13 C -0.148 4.148 14 C -0.095 4.095 15 H 0.070 0.930 16 C -0.094 4.094 17 H 0.107 0.893 18 C -0.155 4.155 19 C 0.025 3.975 20 N -0.355 5.355 21 C -0.369 4.369 22 H 0.091 0.909 23 C -0.260 4.260 24 N -0.598 5.598 25 Si 0.807 3.193 26 H -0.195 1.195 27 H -0.216 1.216 28 H -0.216 1.216 29 C 0.011 3.989 30 C -0.003 4.003 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.251 0.749 35 H 0.215 0.785 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.005 0.995 46 H 0.057 0.943 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.084 0.916 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 21.231 19.988 -0.013 29.159 hybrid contribution -1.901 -1.483 0.604 2.486 sum 19.329 18.505 0.591 26.766 Atomic orbital electron populations 1.20837 0.87104 1.03981 1.04573 1.21978 0.98143 0.87083 0.86005 1.68432 1.11221 1.29168 1.16062 1.25920 0.86262 0.98479 0.86571 1.68604 1.41190 0.99078 1.15526 1.23828 0.89690 0.97708 0.85980 1.21485 0.97432 0.94972 1.11316 1.18111 0.81585 0.83432 0.81322 1.90829 1.34340 1.79647 1.39812 1.48128 1.46139 1.12637 1.25778 1.22146 0.92613 1.02241 0.85004 1.21900 1.01007 0.96460 0.97328 1.21574 0.98464 0.97043 0.97671 1.21347 0.98026 0.94595 0.95498 0.93012 1.22050 0.96059 0.96553 0.94746 0.89291 1.22840 0.97871 0.98267 0.96560 1.21755 0.95843 0.92723 0.87156 1.44866 1.18876 1.55622 1.16129 1.19464 0.94924 1.23358 0.99135 0.90851 1.25616 1.02325 1.00494 0.97533 1.70066 1.37565 1.39046 1.13080 0.85003 0.79171 0.77388 0.77744 1.19498 1.21569 1.21618 1.21511 0.89798 0.92320 0.95284 1.21695 0.98183 0.82491 0.97952 0.88943 0.88204 0.91392 0.74918 0.78527 0.89690 0.87771 0.92942 0.87755 0.89676 0.91065 0.92515 0.89196 0.91346 0.99458 0.94298 0.96665 0.96954 0.91562 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.55 71.24 0.68 -1.45 16 2 C 0.21 4.33 6.86 42.92 0.29 4.62 16 3 N -0.53 -9.72 10.36 -187.07 -1.94 -11.66 16 4 C 0.31 4.31 12.27 180.84 2.22 6.52 16 5 N -0.53 -7.81 10.42 -198.97 -2.07 -9.88 16 6 C 0.19 2.81 9.11 85.06 0.77 3.58 16 7 C -0.24 -4.72 4.62 -19.91 -0.09 -4.81 16 8 C 0.57 13.64 6.20 86.78 0.54 14.18 16 9 O -0.57 -18.69 15.47 -3.90 -0.06 -18.76 16 10 N -0.60 -11.65 2.97 -822.31 -2.44 -14.09 16 11 C 0.10 1.19 5.63 86.36 0.49 1.67 16 12 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 13 C -0.11 -1.82 4.97 30.62 0.15 -1.67 16 14 C -0.07 -1.82 1.74 -10.72 -0.02 -1.84 16 15 H 0.05 1.52 8.06 -2.38 -0.02 1.50 16 16 C -0.07 -2.35 2.49 -9.60 -0.02 -2.37 16 17 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 18 C -0.12 -4.13 5.38 31.99 0.17 -3.96 16 19 C 0.15 7.48 5.89 86.86 0.51 7.99 16 20 N -0.63 -33.75 3.39 -691.99 -2.35 -36.10 16 21 C -0.24 -14.09 10.27 84.03 0.86 -13.23 16 22 H 0.07 4.23 7.83 -2.91 -0.02 4.20 16 23 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 24 N -0.95 -57.65 10.09 21.65 0.22 -57.44 16 25 Si 0.98 47.15 29.55 68.60 2.03 49.18 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 28 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 29 C 0.14 5.83 6.10 86.73 0.53 6.35 16 30 C 0.12 2.77 5.48 86.36 0.47 3.24 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.56 6.69 -2.39 -0.02 1.54 16 34 H 0.23 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.20 1.71 7.81 -2.91 -0.02 1.69 16 36 H 0.08 0.90 5.39 -2.39 -0.01 0.89 16 37 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.25 7.20 -2.39 -0.02 1.24 16 42 H 0.06 2.03 8.05 -2.39 -0.02 2.01 16 43 H 0.09 2.60 8.08 -2.39 -0.02 2.58 16 44 H 0.07 3.91 5.88 -2.38 -0.01 3.90 16 45 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 46 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.01 0.56 7.77 -2.39 -0.02 0.54 16 49 H 0.07 2.02 6.54 -2.39 -0.02 2.00 16 50 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -77.02 388.80 2.53 -74.49 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.93 Total: 10.35 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 8.21 Total: 13.91 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -8.59 Total: -129.17 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.06 Total: -18.76 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -77.02 2.53 -74.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961149536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.232 kcal (2) G-P(sol) polarization free energy of solvation -77.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds