Wall clock time and date at job start Wed Apr 1 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32164 * 120.54002 * 2 1 4 4 C 1.31851 * 120.96904 * 179.97438 * 3 2 1 5 5 N 1.31883 * 122.09827 * 0.02562 * 4 3 2 6 6 C 1.32134 * 120.96426 * 359.70038 * 5 4 3 7 7 C 1.39936 * 120.53740 * 179.97438 * 2 1 3 8 8 C 1.47827 * 120.93973 * 0.02821 * 7 2 1 9 9 O 1.21545 * 120.00372 * 54.68539 * 8 7 2 10 10 N 1.34785 * 119.99612 * 234.69099 * 8 7 2 11 11 C 1.46925 * 120.62842 * 355.93665 * 10 8 7 12 12 C 1.53188 * 108.89160 * 126.46409 * 11 10 8 13 13 C 1.53041 * 109.31587 * 54.55873 * 12 11 10 14 14 C 1.53041 * 109.53717 * 298.63568 * 13 12 11 15 15 H 1.08998 * 109.49884 * 301.40956 * 14 13 12 16 16 C 1.53008 * 109.49384 * 181.34538 * 14 13 12 17 17 H 1.08992 * 110.88789 * 300.69859 * 16 14 13 18 18 C 1.55158 * 110.99961 * 176.81922 * 16 14 13 19 19 C 1.54373 * 102.92186 * 206.45325 * 18 16 14 20 20 N 1.47029 * 107.28441 * 22.13978 * 19 18 16 21 21 C 1.36935 * 125.64417 * 181.05296 * 20 19 18 22 22 H 1.08002 * 119.99497 * 180.02562 * 21 20 19 23 23 C 1.38804 * 120.00272 * 0.04516 * 21 20 19 24 24 N 1.31617 * 120.00046 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00079 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47387 * 89.99831 * 25 23 21 27 27 H 1.48505 * 109.47204 * 210.00222 * 25 23 21 28 28 H 1.48504 * 109.47049 * 329.99904 * 25 23 21 29 29 C 1.47423 * 108.70432 * 1.09398 * 20 19 18 30 30 C 1.46962 * 120.65070 * 175.74941 * 10 8 7 31 31 H 1.08998 * 109.46844 * 274.39805 * 1 2 3 32 32 H 1.08997 * 109.47092 * 34.40200 * 1 2 3 33 33 H 1.09003 * 109.47153 * 154.40343 * 1 2 3 34 34 H 1.07999 * 118.94765 * 180.02562 * 4 3 2 35 35 H 1.07997 * 120.53812 * 180.30950 * 6 5 4 36 36 H 1.09000 * 109.59019 * 6.60396 * 11 10 8 37 37 H 1.09003 * 109.58133 * 246.31993 * 11 10 8 38 38 H 1.09004 * 109.49658 * 174.51314 * 12 11 10 39 39 H 1.09002 * 109.49842 * 294.57661 * 12 11 10 40 40 H 1.09003 * 109.45533 * 58.65874 * 13 12 11 41 41 H 1.08997 * 109.46378 * 178.62844 * 13 12 11 42 42 H 1.08998 * 110.72387 * 324.78921 * 18 16 14 43 43 H 1.09000 * 110.71567 * 88.06238 * 18 16 14 44 44 H 1.08995 * 109.84749 * 262.74010 * 19 18 16 45 45 H 1.08997 * 110.02810 * 141.64869 * 19 18 16 46 46 H 0.96995 * 119.99829 * 179.97438 * 24 23 21 47 47 H 1.08997 * 110.36767 * 217.03519 * 29 20 19 48 48 H 1.09003 * 110.36782 * 94.70698 * 29 20 19 49 49 H 1.09005 * 109.46042 * 113.75386 * 30 10 8 50 50 H 1.08998 * 109.71614 * 353.46900 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 0.0005 5 7 4.2062 0.0362 0.0005 6 6 3.6164 -1.1462 0.0060 7 6 2.2180 -1.2053 0.0005 8 6 1.5121 -2.5041 0.0005 9 8 0.6876 -2.7478 -0.8587 10 7 1.7827 -3.4182 0.9534 11 6 2.8388 -3.1750 1.9455 12 6 2.2509 -3.3515 3.3490 13 6 1.5957 -4.7306 3.4537 14 6 0.4571 -4.8349 2.4365 15 1 -0.2734 -4.0485 2.6262 16 6 -0.2188 -6.2016 2.5649 17 1 0.4954 -7.0062 2.3902 18 6 -1.4308 -6.3151 1.6029 19 6 -2.3359 -7.3477 2.3083 20 7 -1.9680 -7.3507 3.7318 21 6 -2.5243 -8.1457 4.6981 22 1 -2.1834 -8.0719 5.7202 23 6 -3.5259 -9.0467 4.3638 24 7 -3.9407 -9.1372 3.1180 25 14 -4.2843 -10.1316 5.6819 26 1 -5.4517 -9.4380 6.2828 27 1 -4.7280 -11.4119 5.0742 28 1 -3.2758 -10.4076 6.7365 29 6 -0.9018 -6.3556 3.9467 30 6 1.0246 -4.6753 1.0226 31 1 -0.3633 0.0788 1.0246 32 1 -0.3633 0.8479 -0.5806 33 1 -0.3633 -0.9268 -0.4440 34 1 4.0126 2.0971 0.0009 35 1 4.2039 -2.0524 0.0110 36 1 3.2186 -2.1595 1.8335 37 1 3.6505 -3.8872 1.7971 38 1 3.0464 -3.2694 4.0897 39 1 1.5039 -2.5787 3.5304 40 1 2.3382 -5.5018 3.2481 41 1 1.1979 -4.8684 4.4591 42 1 -1.9404 -5.3560 1.5096 43 1 -1.1149 -6.6817 0.6262 44 1 -2.1717 -8.3368 1.8810 45 1 -3.3826 -7.0647 2.1965 46 1 -4.6404 -9.7671 2.8844 47 1 -0.1868 -6.7190 4.6848 48 1 -1.3289 -5.4052 4.2668 49 1 1.6868 -5.5115 0.7980 50 1 0.2077 -4.6522 0.3014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961149538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:37 Heat of formation + Delta-G solvation = 34.928111 kcal Electronic energy + Delta-G solvation = -30675.520767 eV Core-core repulsion = 26703.218724 eV Total energy + Delta-G solvation = -3972.302043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.82163 -40.16931 -38.37737 -36.82455 -34.88664 -33.98697 -32.92482 -32.40331 -31.14180 -29.22767 -28.89854 -27.32791 -26.28229 -25.04276 -24.28406 -23.46195 -22.83210 -21.36324 -19.87678 -19.61491 -19.54415 -18.40452 -17.56157 -17.28474 -16.79177 -16.47143 -15.62040 -15.25767 -14.90615 -14.68177 -14.60383 -14.24107 -14.19032 -13.88664 -13.70111 -13.56194 -13.40539 -13.17178 -13.11097 -12.54056 -12.33853 -12.23342 -12.08640 -11.99926 -11.79902 -11.34075 -11.15874 -11.08261 -10.92249 -10.85324 -10.82327 -10.65127 -10.23242 -10.09759 -9.98483 -9.89611 -9.79582 -9.76483 -9.67912 -9.59641 -8.86366 -8.57595 -6.79834 -5.68732 -3.02098 0.12811 0.53396 2.23254 2.61849 3.23077 3.40664 3.45368 3.47519 3.56124 3.62370 3.87940 3.99270 4.43369 4.48435 4.51581 4.67869 4.71346 4.82127 4.88439 5.02008 5.04334 5.12689 5.21943 5.33326 5.39563 5.47612 5.50558 5.51304 5.60115 5.62847 5.67517 5.72309 5.87250 5.90264 5.93453 5.96137 6.01751 6.18906 6.23618 6.35499 6.41193 6.42928 6.58281 6.60514 6.75753 6.98590 7.03979 7.54187 7.59202 7.68050 7.76790 7.86418 8.29475 9.24962 9.85660 10.52237 11.42894 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.002261 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.611244 B =12379.069921 C =12789.438926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.227 3.773 3 N -0.521 5.521 4 C 0.312 3.688 5 N -0.525 5.525 6 C 0.181 3.819 7 C -0.233 4.233 8 C 0.571 3.429 9 O -0.523 6.523 10 N -0.599 5.599 11 C 0.100 3.900 12 C -0.134 4.134 13 C -0.116 4.116 14 C -0.086 4.086 15 H 0.074 0.926 16 C -0.095 4.095 17 H 0.075 0.925 18 C -0.140 4.140 19 C 0.177 3.823 20 N -0.607 5.607 21 C -0.227 4.227 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.145 3.855 30 C 0.117 3.883 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.202 0.798 35 H 0.173 0.827 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.252 0.748 47 H 0.036 0.964 48 H 0.016 0.984 49 H 0.071 0.929 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.481 18.361 -5.128 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 N -0.235 5.235 4 C 0.025 3.975 5 N -0.239 5.239 6 C 0.015 3.985 7 C -0.241 4.241 8 C 0.356 3.644 9 O -0.399 6.399 10 N -0.331 5.331 11 C -0.023 4.023 12 C -0.172 4.172 13 C -0.154 4.154 14 C -0.106 4.106 15 H 0.092 0.908 16 C -0.115 4.115 17 H 0.093 0.907 18 C -0.179 4.179 19 C 0.053 3.947 20 N -0.333 5.333 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.019 3.981 30 C -0.004 4.004 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.218 0.782 35 H 0.190 0.810 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.033 0.967 49 H 0.090 0.910 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.341 18.921 -5.583 26.265 hybrid contribution -0.695 -1.326 0.753 1.676 sum 16.645 17.595 -4.830 24.698 Atomic orbital electron populations 1.21087 0.86948 1.05964 1.04287 1.21867 0.97947 0.86463 0.85674 1.68392 1.10314 1.29567 1.15225 1.25202 0.86726 0.97276 0.88334 1.68476 1.41333 0.98889 1.15188 1.23468 0.90490 0.96815 0.87745 1.21615 0.96675 0.96284 1.09529 1.17806 0.82158 0.82681 0.81711 1.90809 1.34153 1.78353 1.36589 1.48106 1.36454 1.19139 1.29428 1.21976 0.89939 1.01756 0.88671 1.21920 1.00852 0.98916 0.95519 1.21611 0.97602 0.95879 1.00299 1.21475 0.96996 0.98696 0.93445 0.90756 1.22314 0.96574 0.94489 0.98103 0.90693 1.22940 0.96662 1.00437 0.97837 1.21136 0.95379 0.95226 0.83005 1.44493 1.41104 1.42584 1.05146 1.19046 1.14532 1.13025 0.88973 0.90557 1.24805 0.99329 0.99884 0.96562 1.69973 1.31933 1.39207 1.15830 0.86134 0.79201 0.79964 0.80545 1.21649 1.21698 1.20738 1.21512 0.90425 0.92551 0.93623 1.21835 0.96352 0.83612 0.98605 0.89201 0.89271 0.88052 0.78196 0.80954 0.90393 0.90532 0.90571 0.91531 0.91589 0.90787 0.92566 0.92303 0.93755 0.94130 0.93798 0.94606 0.96679 0.91037 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 9.93 36.00 0.36 -0.81 16 2 C 0.23 2.32 6.86 -81.82 -0.56 1.76 16 3 N -0.52 -5.08 10.36 -10.48 -0.11 -5.19 16 4 C 0.31 2.51 12.27 -92.03 -1.13 1.38 16 5 N -0.52 -4.56 10.42 -14.24 -0.15 -4.71 16 6 C 0.18 1.51 8.76 -16.77 -0.15 1.36 16 7 C -0.23 -2.33 4.88 -104.69 -0.51 -2.84 16 8 C 0.57 6.63 6.64 -12.33 -0.08 6.55 16 9 O -0.52 -7.79 14.68 5.33 0.08 -7.72 16 10 N -0.60 -6.10 2.98 -173.86 -0.52 -6.61 16 11 C 0.10 0.74 5.60 -3.71 -0.02 0.72 16 12 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 13 C -0.12 -1.18 5.02 -26.69 -0.13 -1.32 16 14 C -0.09 -1.07 1.84 -90.50 -0.17 -1.23 16 15 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 16 C -0.09 -1.52 2.56 -88.47 -0.23 -1.75 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.14 -2.57 5.56 -24.87 -0.14 -2.70 16 19 C 0.18 4.32 5.38 -3.03 -0.02 4.30 16 20 N -0.61 -15.48 3.39 -170.04 -0.58 -16.06 16 21 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 22 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 24 N -0.92 -27.36 10.31 55.49 0.57 -26.78 16 25 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 C 0.15 2.89 5.80 -2.53 -0.01 2.87 16 30 C 0.12 1.36 5.42 -3.69 -0.02 1.34 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.11 5.75 -51.93 -0.30 0.81 16 34 H 0.20 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.17 1.02 7.46 -52.49 -0.39 0.63 16 36 H 0.08 0.53 4.76 -51.93 -0.25 0.28 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.82 7.32 -51.93 -0.38 0.44 16 42 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.04 1.20 7.38 -51.93 -0.38 0.81 16 45 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.04 0.69 8.03 -51.93 -0.42 0.27 16 48 H 0.02 0.31 8.03 -51.93 -0.42 -0.11 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.10 1.33 6.51 -51.93 -0.34 0.99 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -33.35 387.75 -10.98 -44.33 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.87 Total: -1.78 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -3.22 Total: 1.51 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.78 Total: -59.36 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.08 Total: -7.72 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.35 -10.98 -44.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961149538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.261 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds