Wall clock time and date at job start Wed Apr 1 2020 03:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32164 * 120.54002 * 2 1 4 4 C 1.31851 * 120.96904 * 179.97438 * 3 2 1 5 5 N 1.31883 * 122.09827 * 0.02562 * 4 3 2 6 6 C 1.32134 * 120.96426 * 359.70038 * 5 4 3 7 7 C 1.39936 * 120.53740 * 179.97438 * 2 1 3 8 8 C 1.47827 * 120.93973 * 0.02821 * 7 2 1 9 9 O 1.21545 * 120.00372 * 54.68539 * 8 7 2 10 10 N 1.34785 * 119.99612 * 234.69099 * 8 7 2 11 11 C 1.46925 * 120.62842 * 355.93665 * 10 8 7 12 12 C 1.53188 * 108.89160 * 126.46409 * 11 10 8 13 13 C 1.53041 * 109.31587 * 54.55873 * 12 11 10 14 14 C 1.53041 * 109.53717 * 298.63568 * 13 12 11 15 15 H 1.08998 * 109.49884 * 301.40956 * 14 13 12 16 16 C 1.53008 * 109.49384 * 181.34538 * 14 13 12 17 17 H 1.08992 * 110.88789 * 300.69859 * 16 14 13 18 18 C 1.55158 * 110.99961 * 176.81922 * 16 14 13 19 19 C 1.54373 * 102.92186 * 206.45325 * 18 16 14 20 20 N 1.47029 * 107.28441 * 22.13978 * 19 18 16 21 21 C 1.36935 * 125.64417 * 181.05296 * 20 19 18 22 22 H 1.08002 * 119.99497 * 180.02562 * 21 20 19 23 23 C 1.38804 * 120.00272 * 0.04516 * 21 20 19 24 24 N 1.31617 * 120.00046 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00079 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47387 * 89.99831 * 25 23 21 27 27 H 1.48505 * 109.47204 * 210.00222 * 25 23 21 28 28 H 1.48504 * 109.47049 * 329.99904 * 25 23 21 29 29 C 1.47423 * 108.70432 * 1.09398 * 20 19 18 30 30 C 1.46962 * 120.65070 * 175.74941 * 10 8 7 31 31 H 1.08998 * 109.46844 * 274.39805 * 1 2 3 32 32 H 1.08997 * 109.47092 * 34.40200 * 1 2 3 33 33 H 1.09003 * 109.47153 * 154.40343 * 1 2 3 34 34 H 1.07999 * 118.94765 * 180.02562 * 4 3 2 35 35 H 1.07997 * 120.53812 * 180.30950 * 6 5 4 36 36 H 1.09000 * 109.59019 * 6.60396 * 11 10 8 37 37 H 1.09003 * 109.58133 * 246.31993 * 11 10 8 38 38 H 1.09004 * 109.49658 * 174.51314 * 12 11 10 39 39 H 1.09002 * 109.49842 * 294.57661 * 12 11 10 40 40 H 1.09003 * 109.45533 * 58.65874 * 13 12 11 41 41 H 1.08997 * 109.46378 * 178.62844 * 13 12 11 42 42 H 1.08998 * 110.72387 * 324.78921 * 18 16 14 43 43 H 1.09000 * 110.71567 * 88.06238 * 18 16 14 44 44 H 1.08995 * 109.84749 * 262.74010 * 19 18 16 45 45 H 1.08997 * 110.02810 * 141.64869 * 19 18 16 46 46 H 0.96995 * 119.99829 * 179.97438 * 24 23 21 47 47 H 1.08997 * 110.36767 * 217.03519 * 29 20 19 48 48 H 1.09003 * 110.36782 * 94.70698 * 29 20 19 49 49 H 1.09005 * 109.46042 * 113.75386 * 30 10 8 50 50 H 1.08998 * 109.71614 * 353.46900 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 0.0005 5 7 4.2062 0.0362 0.0005 6 6 3.6164 -1.1462 0.0060 7 6 2.2180 -1.2053 0.0005 8 6 1.5121 -2.5041 0.0005 9 8 0.6876 -2.7478 -0.8587 10 7 1.7827 -3.4182 0.9534 11 6 2.8388 -3.1750 1.9455 12 6 2.2509 -3.3515 3.3490 13 6 1.5957 -4.7306 3.4537 14 6 0.4571 -4.8349 2.4365 15 1 -0.2734 -4.0485 2.6262 16 6 -0.2188 -6.2016 2.5649 17 1 0.4954 -7.0062 2.3902 18 6 -1.4308 -6.3151 1.6029 19 6 -2.3359 -7.3477 2.3083 20 7 -1.9680 -7.3507 3.7318 21 6 -2.5243 -8.1457 4.6981 22 1 -2.1834 -8.0719 5.7202 23 6 -3.5259 -9.0467 4.3638 24 7 -3.9407 -9.1372 3.1180 25 14 -4.2843 -10.1316 5.6819 26 1 -5.4517 -9.4380 6.2828 27 1 -4.7280 -11.4119 5.0742 28 1 -3.2758 -10.4076 6.7365 29 6 -0.9018 -6.3556 3.9467 30 6 1.0246 -4.6753 1.0226 31 1 -0.3633 0.0788 1.0246 32 1 -0.3633 0.8479 -0.5806 33 1 -0.3633 -0.9268 -0.4440 34 1 4.0126 2.0971 0.0009 35 1 4.2039 -2.0524 0.0110 36 1 3.2186 -2.1595 1.8335 37 1 3.6505 -3.8872 1.7971 38 1 3.0464 -3.2694 4.0897 39 1 1.5039 -2.5787 3.5304 40 1 2.3382 -5.5018 3.2481 41 1 1.1979 -4.8684 4.4591 42 1 -1.9404 -5.3560 1.5096 43 1 -1.1149 -6.6817 0.6262 44 1 -2.1717 -8.3368 1.8810 45 1 -3.3826 -7.0647 2.1965 46 1 -4.6404 -9.7671 2.8844 47 1 -0.1868 -6.7190 4.6848 48 1 -1.3289 -5.4052 4.2668 49 1 1.6868 -5.5115 0.7980 50 1 0.2077 -4.6522 0.3014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961149538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:36 Heat of formation + Delta-G solvation = 15.199714 kcal Electronic energy + Delta-G solvation = -30676.376254 eV Core-core repulsion = 26703.218724 eV Total energy + Delta-G solvation = -3973.157530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.52628 -41.03003 -39.63495 -38.08087 -35.61329 -35.25054 -34.07066 -33.37287 -32.49936 -30.69422 -29.93062 -28.75877 -27.09698 -26.53489 -25.39417 -24.30520 -23.72261 -22.45863 -21.63937 -20.88144 -20.43444 -19.11780 -18.83595 -18.29394 -17.88516 -17.33628 -16.90333 -16.47260 -16.15928 -15.83117 -15.56930 -15.52703 -15.26883 -14.87887 -14.65700 -14.34666 -14.19758 -14.05747 -13.95910 -13.91651 -13.81594 -13.57788 -13.31104 -13.25932 -12.84143 -12.79660 -12.73001 -12.31235 -12.16765 -12.10509 -11.99246 -11.78666 -11.71626 -11.62434 -11.39377 -11.35814 -11.05511 -10.95659 -10.70847 -10.58473 -10.43281 -9.71210 -8.88821 -7.84455 -5.20136 -0.54090 -0.13736 1.38675 1.44821 1.47189 1.55813 1.82138 2.49776 2.56994 2.92237 3.05407 3.22814 3.28615 3.33518 3.57914 3.72021 3.79076 3.84209 3.88671 4.03877 4.14700 4.19206 4.28098 4.36159 4.38371 4.41421 4.52137 4.53644 4.58099 4.69340 4.72949 4.77408 4.82924 4.88221 4.93813 4.95151 4.97334 5.07348 5.14603 5.17160 5.24209 5.35222 5.39992 5.46058 5.47625 5.56658 5.68482 5.74638 5.78802 6.20880 6.23433 6.89744 6.92714 7.10745 7.79443 8.44375 9.26149 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.002261 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.611244 B =12379.069921 C =12789.438926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.215 3.785 3 N -0.535 5.535 4 C 0.313 3.687 5 N -0.531 5.531 6 C 0.191 3.809 7 C -0.246 4.246 8 C 0.572 3.428 9 O -0.564 6.564 10 N -0.594 5.594 11 C 0.097 3.903 12 C -0.128 4.128 13 C -0.114 4.114 14 C -0.074 4.074 15 H 0.061 0.939 16 C -0.075 4.075 17 H 0.082 0.918 18 C -0.126 4.126 19 C 0.185 3.815 20 N -0.630 5.630 21 C -0.240 4.240 22 H 0.084 0.916 23 C -0.071 4.071 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.287 1.287 27 H -0.295 1.295 28 H -0.266 1.266 29 C 0.141 3.859 30 C 0.121 3.879 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.234 0.766 35 H 0.199 0.801 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.009 0.991 45 H -0.002 1.002 46 H 0.245 0.755 47 H 0.046 0.954 48 H 0.017 0.983 49 H 0.087 0.913 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.716 19.628 -4.078 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.069 3.931 3 N -0.250 5.250 4 C 0.027 3.973 5 N -0.245 5.245 6 C 0.024 3.976 7 C -0.253 4.253 8 C 0.359 3.641 9 O -0.444 6.444 10 N -0.325 5.325 11 C -0.024 4.024 12 C -0.166 4.166 13 C -0.151 4.151 14 C -0.094 4.094 15 H 0.079 0.921 16 C -0.095 4.095 17 H 0.100 0.900 18 C -0.165 4.165 19 C 0.059 3.941 20 N -0.357 5.357 21 C -0.369 4.369 22 H 0.102 0.898 23 C -0.264 4.264 24 N -0.603 5.603 25 Si 0.807 3.193 26 H -0.214 1.214 27 H -0.222 1.222 28 H -0.190 1.190 29 C 0.016 3.984 30 C -0.001 4.001 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.250 0.750 35 H 0.216 0.784 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.016 0.984 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.035 0.965 49 H 0.105 0.895 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.629 20.224 -4.493 29.236 hybrid contribution -1.679 -1.656 0.449 2.400 sum 18.950 18.568 -4.044 26.837 Atomic orbital electron populations 1.21029 0.87066 1.05187 1.04702 1.21989 0.98252 0.86976 0.85867 1.68447 1.11202 1.29281 1.16080 1.25901 0.86313 0.98458 0.86626 1.68595 1.41242 0.99107 1.15567 1.23856 0.89824 0.97721 0.86165 1.21485 0.97408 0.95174 1.11245 1.18035 0.81587 0.83199 0.81316 1.90790 1.36061 1.79160 1.38377 1.48130 1.36565 1.18243 1.29570 1.22224 0.89561 1.03266 0.87374 1.21884 1.01196 0.96946 0.96553 1.21591 0.96938 0.97876 0.98742 1.21301 0.97459 0.95535 0.95069 0.92100 1.22179 0.95602 0.97163 0.94566 0.89995 1.22778 0.96518 0.98606 0.98561 1.20888 0.94524 0.95116 0.83531 1.44849 1.42416 1.43297 1.05114 1.19487 1.14453 1.13060 0.89937 0.89820 1.25701 1.00259 1.01724 0.98715 1.70214 1.32412 1.39895 1.17819 0.85062 0.78398 0.77617 0.78174 1.21435 1.22170 1.19025 1.21709 0.89413 0.91065 0.96170 1.21657 0.96337 0.84937 0.97131 0.88434 0.88556 0.89991 0.75021 0.78433 0.89281 0.87912 0.88065 0.92592 0.90191 0.91650 0.92150 0.90489 0.97263 0.98354 0.94530 0.93583 0.96529 0.89468 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 9.93 71.23 0.71 -1.57 16 2 C 0.22 4.19 6.86 42.92 0.29 4.48 16 3 N -0.54 -9.56 10.36 -187.06 -1.94 -11.50 16 4 C 0.31 4.24 12.27 180.84 2.22 6.46 16 5 N -0.53 -7.67 10.42 -198.98 -2.07 -9.74 16 6 C 0.19 2.64 8.76 85.07 0.75 3.39 16 7 C -0.25 -4.52 4.88 -19.91 -0.10 -4.61 16 8 C 0.57 12.71 6.64 86.78 0.58 13.29 16 9 O -0.56 -17.04 14.68 -3.86 -0.06 -17.10 16 10 N -0.59 -10.82 2.98 -822.25 -2.45 -13.27 16 11 C 0.10 1.09 5.60 86.36 0.48 1.57 16 12 C -0.13 -1.60 6.08 30.67 0.19 -1.41 16 13 C -0.11 -1.97 5.02 30.62 0.15 -1.82 16 14 C -0.07 -1.70 1.84 -10.71 -0.02 -1.72 16 15 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 16 C -0.08 -2.34 2.56 -9.40 -0.02 -2.37 16 17 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 18 C -0.13 -4.68 5.56 31.80 0.18 -4.50 16 19 C 0.18 9.42 5.38 86.74 0.47 9.88 16 20 N -0.63 -32.88 3.39 -691.89 -2.35 -35.23 16 21 C -0.24 -13.66 10.28 84.03 0.86 -12.80 16 22 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 23 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 24 N -0.95 -59.05 10.31 21.65 0.22 -58.83 16 25 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 C 0.14 5.55 5.80 86.86 0.50 6.06 16 30 C 0.12 2.60 5.42 86.35 0.47 3.07 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.87 5.75 -2.39 -0.01 1.86 16 34 H 0.23 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.20 1.58 7.46 -2.91 -0.02 1.55 16 36 H 0.09 0.86 4.76 -2.39 -0.01 0.85 16 37 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.27 7.32 -2.39 -0.02 1.26 16 42 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 43 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.01 0.52 7.38 -2.39 -0.02 0.50 16 45 H 0.00 -0.11 7.50 -2.39 -0.02 -0.12 16 46 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 47 H 0.05 1.72 8.03 -2.39 -0.02 1.70 16 48 H 0.02 0.66 8.03 -2.39 -0.02 0.65 16 49 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 50 H 0.08 2.02 6.51 -2.39 -0.02 2.00 16 Total: -1.00 -76.13 387.75 2.49 -73.64 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.94 Total: 9.90 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 8.17 Total: 13.71 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -8.59 Total: -128.58 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.06 Total: -17.10 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -76.13 2.49 -73.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961149538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.837 kcal (2) G-P(sol) polarization free energy of solvation -76.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds