Wall clock time and date at job start Wed Apr 1 2020 03:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38830 * 120.41239 * 2 1 4 4 C 1.38781 * 118.50275 * 180.02562 * 3 2 1 5 5 N 1.32125 * 119.16632 * 359.72746 * 4 3 2 6 6 C 1.32439 * 120.76804 * 0.54491 * 5 4 3 7 7 C 1.48540 * 119.18708 * 179.71597 * 6 5 4 8 8 O 1.21472 * 120.00166 * 226.36804 * 7 6 5 9 9 N 1.34776 * 119.99815 * 46.36557 * 7 6 5 10 10 C 1.46924 * 120.63013 * 356.37847 * 9 7 6 11 11 C 1.53191 * 108.77692 * 126.41351 * 10 9 7 12 12 C 1.53048 * 109.31098 * 54.63517 * 11 10 9 13 13 C 1.53037 * 109.53554 * 298.63689 * 12 11 10 14 14 H 1.08999 * 109.52553 * 301.39354 * 13 12 11 15 15 C 1.53007 * 109.49697 * 181.31668 * 13 12 11 16 16 H 1.08998 * 110.91316 * 296.26012 * 15 13 12 17 17 C 1.55158 * 111.00355 * 60.16053 * 15 13 12 18 18 C 1.54316 * 103.10073 * 153.66861 * 17 15 13 19 19 N 1.47020 * 107.27206 * 337.71407 * 18 17 15 20 20 C 1.36937 * 125.64688 * 178.97819 * 19 18 17 21 21 H 1.08003 * 119.99621 * 174.66001 * 20 19 18 22 22 C 1.38807 * 120.00245 * 354.65109 * 20 19 18 23 23 N 1.31617 * 119.99987 * 8.33121 * 22 20 19 24 24 Si 1.86802 * 120.00070 * 188.32553 * 22 20 19 25 25 H 1.48503 * 109.46919 * 94.97136 * 24 22 20 26 26 H 1.48500 * 109.47076 * 214.97222 * 24 22 20 27 27 H 1.48502 * 109.47207 * 334.97028 * 24 22 20 28 28 C 1.47422 * 108.70500 * 358.94559 * 19 18 17 29 29 C 1.46923 * 120.62977 * 176.40417 * 9 7 6 30 30 N 1.32088 * 120.42528 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.47117 * 269.97666 * 1 2 3 32 32 H 1.08999 * 109.47588 * 29.97985 * 1 2 3 33 33 H 1.08999 * 109.46781 * 149.98273 * 1 2 3 34 34 H 1.08002 * 120.74564 * 0.03824 * 3 2 1 35 35 H 1.08003 * 120.41225 * 180.02562 * 4 3 2 36 36 H 1.08997 * 109.59069 * 246.20296 * 10 9 7 37 37 H 1.09002 * 109.58872 * 6.48237 * 10 9 7 38 38 H 1.09001 * 109.50352 * 174.58638 * 11 10 9 39 39 H 1.08995 * 109.49743 * 294.65162 * 11 10 9 40 40 H 1.09001 * 109.45884 * 178.61268 * 12 11 10 41 41 H 1.09000 * 109.46004 * 58.65606 * 12 11 10 42 42 H 1.09004 * 110.72017 * 35.20847 * 17 15 13 43 43 H 1.09006 * 110.71606 * 272.12292 * 17 15 13 44 44 H 1.08999 * 109.88657 * 97.13715 * 18 17 15 45 45 H 1.09006 * 109.87882 * 218.29851 * 18 17 15 46 46 H 0.97000 * 120.00520 * 179.97438 * 23 22 20 47 47 H 1.08997 * 110.36815 * 142.96088 * 28 19 18 48 48 H 1.08996 * 110.36767 * 265.28782 * 28 19 18 49 49 H 1.08999 * 109.58799 * 113.80173 * 29 9 7 50 50 H 1.08998 * 109.70455 * 353.43735 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2098 1.1973 0.0000 4 6 3.5968 1.1510 -0.0005 5 7 4.2019 -0.0235 0.0044 6 6 3.5007 -1.1470 -0.0009 7 6 4.2171 -2.4481 -0.0014 8 8 3.8771 -3.3285 -0.7663 9 7 5.2446 -2.6520 0.8467 10 6 5.7186 -1.5712 1.7217 11 6 5.7259 -2.0752 3.1683 12 6 6.5528 -3.3604 3.2523 13 6 5.9173 -4.4364 2.3689 14 1 4.8935 -4.6183 2.6958 15 6 6.7260 -5.7307 2.4790 16 1 7.7363 -5.5921 2.0942 17 6 6.7540 -6.2461 3.9422 18 6 6.9610 -7.7660 3.7738 19 7 6.5085 -8.1208 2.4207 20 6 6.5439 -9.3743 1.8704 21 1 6.1080 -9.5496 0.8979 22 6 7.1402 -10.4195 2.5623 23 7 7.5242 -10.2487 3.8096 24 14 7.3975 -12.0685 1.7234 25 1 8.7697 -12.1278 1.1586 26 1 7.2224 -13.1607 2.7142 27 1 6.4050 -12.2281 0.6303 28 6 6.0096 -6.9039 1.7547 29 6 5.9122 -3.9591 0.9133 30 7 2.1759 -1.1390 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6888 2.1433 0.0006 35 1 4.1743 2.0637 -0.0001 36 1 6.7283 -1.2815 1.4307 37 1 5.0530 -0.7123 1.6352 38 1 6.1657 -1.3167 3.8158 39 1 4.7038 -2.2782 3.4880 40 1 6.5801 -3.7078 4.2851 41 1 7.5682 -3.1619 2.9092 42 1 5.8079 -6.0387 4.4424 43 1 7.5843 -5.8023 4.4916 44 1 8.0169 -8.0113 3.8878 45 1 6.3710 -8.3049 4.5152 46 1 7.9406 -10.9791 4.2933 47 1 6.2741 -6.9145 0.6974 48 1 4.9295 -6.8210 1.8756 49 1 6.9377 -3.8642 0.5563 50 1 5.3750 -4.6781 0.2948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961171312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:43 Heat of formation + Delta-G solvation = 18.886295 kcal Electronic energy + Delta-G solvation = -30353.635908 eV Core-core repulsion = 26380.638239 eV Total energy + Delta-G solvation = -3972.997668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.49814 -41.04427 -39.62791 -38.10375 -35.78209 -35.10889 -33.88373 -33.47743 -32.51695 -30.90105 -29.61770 -28.69175 -27.61734 -26.39070 -25.47134 -24.12243 -23.93583 -22.38617 -21.71588 -20.92213 -20.57340 -18.95037 -18.80623 -18.51395 -17.57742 -16.96759 -16.78091 -16.55593 -16.27745 -15.76285 -15.68316 -15.58542 -15.41523 -15.08512 -14.69412 -14.26622 -14.22555 -14.06145 -14.00815 -13.93424 -13.82439 -13.49995 -13.29755 -13.20239 -12.90515 -12.76591 -12.37982 -12.23387 -12.17106 -12.08651 -11.95022 -11.84018 -11.78283 -11.62833 -11.52930 -11.37663 -11.10950 -11.01960 -10.69320 -10.52401 -10.40594 -9.77060 -8.90359 -7.88277 -5.21955 -0.53502 0.01999 1.26992 1.42950 1.45310 1.54424 1.55755 2.47857 2.53512 2.79345 3.11734 3.28640 3.52905 3.57617 3.60866 3.72575 3.83210 3.92330 4.02876 4.07039 4.15341 4.21407 4.28501 4.31626 4.40852 4.54431 4.58179 4.61195 4.67780 4.69726 4.76875 4.78229 4.83789 4.87155 4.91155 4.96598 5.05058 5.09510 5.09729 5.15093 5.32336 5.35155 5.38823 5.43406 5.45982 5.53451 5.68876 5.77875 5.88884 6.12907 6.19303 6.73132 6.91380 7.09573 7.76884 8.42252 9.22816 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.002286 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.919560 B =12243.867192 C =13006.173549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.152 3.848 3 C -0.188 4.188 4 C 0.142 3.858 5 N -0.504 5.504 6 C 0.275 3.725 7 C 0.580 3.420 8 O -0.564 6.564 9 N -0.584 5.584 10 C 0.103 3.897 11 C -0.129 4.129 12 C -0.110 4.110 13 C -0.074 4.074 14 H 0.057 0.943 15 C -0.074 4.074 16 H 0.084 0.916 17 C -0.117 4.117 18 C 0.181 3.819 19 N -0.629 5.629 20 C -0.247 4.247 21 H 0.076 0.924 22 C -0.065 4.065 23 N -0.948 5.948 24 Si 0.978 3.022 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.271 1.271 28 C 0.134 3.866 29 C 0.119 3.881 30 N -0.521 5.521 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.201 0.799 35 H 0.222 0.778 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.014 0.986 45 H 0.000 1.000 46 H 0.248 0.752 47 H 0.035 0.965 48 H 0.008 0.992 49 H 0.089 0.911 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 34.585 -2.591 35.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.007 3.993 3 C -0.209 4.209 4 C -0.023 4.023 5 N -0.222 5.222 6 C 0.005 3.995 7 C 0.364 3.636 8 O -0.441 6.441 9 N -0.316 5.316 10 C -0.018 4.018 11 C -0.167 4.167 12 C -0.148 4.148 13 C -0.093 4.093 14 H 0.076 0.924 15 C -0.094 4.094 16 H 0.102 0.898 17 C -0.155 4.155 18 C 0.056 3.944 19 N -0.356 5.356 20 C -0.376 4.376 21 H 0.093 0.907 22 C -0.258 4.258 23 N -0.597 5.597 24 Si 0.806 3.194 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.196 1.196 28 C 0.009 3.991 29 C -0.003 4.003 30 N -0.238 5.238 31 H 0.118 0.882 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.218 0.782 35 H 0.238 0.762 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.032 0.968 45 H 0.018 0.982 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.026 0.974 49 H 0.108 0.892 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.032 33.031 -2.945 34.121 hybrid contribution -0.413 -1.152 -0.427 1.296 sum -8.446 31.879 -3.372 33.151 Atomic orbital electron populations 1.20952 0.85240 1.05192 1.04930 1.22546 0.99413 0.87772 0.89608 1.23502 0.96412 1.01371 0.99592 1.24199 0.93306 0.96008 0.88751 1.68455 1.41272 0.99010 1.13442 1.22257 0.87682 0.92824 0.96738 1.17831 0.79713 0.85088 0.80943 1.90783 1.66987 1.44904 1.41411 1.48023 1.31291 1.14069 1.38188 1.22253 1.01992 0.88630 0.88943 1.21945 1.00513 0.98338 0.95858 1.21584 0.99691 0.93401 1.00079 1.21313 0.99219 0.94255 0.94542 0.92443 1.22244 0.99109 0.92306 0.95763 0.89775 1.22723 1.01889 0.94689 0.96232 1.20959 0.96394 0.91559 0.85442 1.44834 1.73650 1.03903 1.13179 1.19436 1.31189 0.85866 1.01106 0.90651 1.25668 1.01208 1.01925 0.96990 1.70204 1.47314 1.32324 1.09852 0.85070 0.78063 0.78865 0.77420 1.21063 1.21811 1.19599 1.21837 0.95155 0.86546 0.95573 1.21733 0.97941 0.83146 0.97509 1.68034 1.08700 1.33528 1.13580 0.88234 0.86429 0.91410 0.78166 0.76162 0.88853 0.88399 0.87493 0.93009 0.90473 0.89995 0.91673 0.89306 0.96806 0.98183 0.94288 0.94679 0.97376 0.89248 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.22 71.24 0.73 -0.17 16 2 C 0.15 2.30 6.82 42.66 0.29 2.60 16 3 C -0.19 -1.36 9.87 22.54 0.22 -1.13 16 4 C 0.14 1.29 11.30 84.78 0.96 2.25 16 5 N -0.50 -9.44 7.76 -189.10 -1.47 -10.91 16 6 C 0.28 7.27 6.62 137.69 0.91 8.18 16 7 C 0.58 18.80 7.56 86.99 0.66 19.46 16 8 O -0.56 -23.34 16.53 -3.63 -0.06 -23.40 16 9 N -0.58 -15.54 2.97 -821.54 -2.44 -17.98 16 10 C 0.10 1.86 6.04 86.36 0.52 2.38 16 11 C -0.13 -2.07 6.08 30.67 0.19 -1.88 16 12 C -0.11 -2.15 4.97 30.62 0.15 -2.00 16 13 C -0.07 -2.01 1.87 -10.71 -0.02 -2.03 16 14 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 15 C -0.07 -2.54 2.58 -9.23 -0.02 -2.57 16 16 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 17 C -0.12 -4.30 5.27 31.78 0.17 -4.13 16 18 C 0.18 9.39 5.38 86.73 0.47 9.85 16 19 N -0.63 -34.84 3.40 -691.06 -2.35 -37.18 16 20 C -0.25 -14.88 10.26 84.03 0.86 -14.02 16 21 H 0.08 4.43 7.84 -2.91 -0.02 4.40 16 22 C -0.06 -3.89 5.47 84.86 0.46 -3.43 16 23 N -0.95 -59.39 10.38 21.65 0.22 -59.17 16 24 Si 0.98 48.10 29.56 68.60 2.03 50.13 16 25 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 28 C 0.13 6.02 6.09 87.02 0.53 6.55 16 29 C 0.12 3.38 5.49 86.36 0.47 3.86 16 30 N -0.52 -13.49 10.28 -177.24 -1.82 -15.31 16 31 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.12 0.16 8.10 -2.39 -0.02 0.14 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.20 -0.52 8.06 -2.91 -0.02 -0.55 16 35 H 0.22 -0.13 8.06 -2.91 -0.02 -0.15 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.70 4.85 -2.39 -0.01 1.68 16 38 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.48 7.22 -2.39 -0.02 1.46 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 2.27 8.04 -2.39 -0.02 2.25 16 43 H 0.09 2.74 8.09 -2.38 -0.02 2.73 16 44 H 0.01 0.78 7.33 -2.39 -0.02 0.77 16 45 H 0.00 0.00 7.59 -2.38 -0.02 -0.02 16 46 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.01 0.39 8.00 -2.39 -0.02 0.37 16 49 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.07 2.33 6.65 -2.39 -0.02 2.31 16 Total: -1.00 -87.04 393.57 2.59 -84.44 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 0.93 Total: 5.61 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 7.55 Total: 23.76 kcal Atomic # 7 Polarization: -132.70 SS G_CDS: -7.85 Total: -140.55 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.06 Total: -23.40 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -87.04 2.59 -84.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961171312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.331 kcal (2) G-P(sol) polarization free energy of solvation -87.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds