Wall clock time and date at job start Wed Apr 1 2020 03:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38048 * 126.29191 * 2 1 4 4 C 1.47429 * 126.41658 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99663 * 0.27648 * 4 3 2 6 6 N 1.34767 * 120.00155 * 180.28073 * 4 3 2 7 7 C 1.46505 * 120.00420 * 179.97438 * 6 4 3 8 8 H 1.08996 * 115.51052 * 9.41428 * 7 6 4 9 9 C 1.52993 * 117.44284 * 224.00219 * 7 6 4 10 10 H 1.09000 * 119.54513 * 4.11512 * 9 7 6 11 11 C 1.54439 * 118.08871 * 160.74079 * 9 7 6 12 12 N 1.48149 * 104.56211 * 87.29347 * 11 9 7 13 13 C 1.36928 * 127.84253 * 140.39860 * 12 11 9 14 14 H 1.08002 * 120.00218 * 195.57710 * 13 12 11 15 15 C 1.38812 * 120.00059 * 15.57304 * 13 12 11 16 16 N 1.31622 * 119.99772 * 9.10397 * 15 13 12 17 17 Si 1.86802 * 120.00245 * 189.09654 * 15 13 12 18 18 H 1.48504 * 109.46951 * 60.00157 * 17 15 13 19 19 H 1.48506 * 109.47087 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47220 * 300.00265 * 17 15 13 21 21 C 1.48147 * 104.31926 * 320.40232 * 12 11 9 22 22 C 1.52993 * 117.44337 * 154.82844 * 7 6 4 23 23 H 1.08998 * 119.54709 * 354.29335 * 22 7 6 24 24 C 1.41288 * 107.16892 * 180.24360 * 3 2 1 25 25 N 1.30448 * 108.02495 * 359.77915 * 24 3 2 26 26 N 1.34253 * 126.29143 * 179.86103 * 2 1 3 27 27 C 1.46498 * 125.75537 * 0.02562 * 26 2 1 28 28 C 1.54265 * 110.07881 * 121.82898 * 27 26 2 29 29 C 1.54891 * 104.19671 * 95.69458 * 28 27 26 30 30 C 1.54895 * 102.74391 * 37.94852 * 29 28 27 31 31 C 1.53872 * 110.03554 * 239.02519 * 27 26 2 32 32 H 1.09006 * 109.47301 * 270.13576 * 1 2 3 33 33 H 1.09007 * 109.47111 * 30.13501 * 1 2 3 34 34 H 1.08999 * 109.47283 * 150.13217 * 1 2 3 35 35 H 0.97001 * 120.00391 * 359.97438 * 6 4 3 36 36 H 1.08996 * 110.44725 * 328.52054 * 11 9 7 37 37 H 1.09002 * 110.42246 * 206.05087 * 11 9 7 38 38 H 0.97006 * 119.99806 * 180.02562 * 16 15 13 39 39 H 1.09001 * 110.40928 * 280.79694 * 21 12 11 40 40 H 1.09002 * 110.40751 * 158.37287 * 21 12 11 41 41 H 1.08000 * 125.99301 * 179.79914 * 24 3 2 42 42 H 1.09003 * 110.01964 * 0.41162 * 27 26 2 43 43 H 1.09002 * 110.49162 * 214.37802 * 28 27 26 44 44 H 1.09002 * 110.48239 * 337.01996 * 28 27 26 45 45 H 1.08996 * 110.76076 * 279.63376 * 29 28 27 46 46 H 1.09000 * 110.75367 * 156.25965 * 29 28 27 47 47 H 1.08995 * 110.48352 * 203.37578 * 30 29 28 48 48 H 1.09000 * 110.48370 * 80.73599 * 30 29 28 49 49 H 1.09000 * 110.02920 * 359.94659 * 31 27 26 50 50 H 1.08999 * 110.03978 * 121.38121 * 31 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 0.0041 6 7 2.7999 3.5107 -0.0062 7 6 2.3645 4.9095 -0.0073 8 1 1.2991 5.0696 0.1576 9 6 3.0837 5.8711 -0.9553 10 1 3.8387 5.4859 -1.6407 11 6 2.3815 7.1987 -1.3150 12 7 2.7868 8.1370 -0.2425 13 6 3.1142 9.4609 -0.3641 14 1 3.6286 9.9661 0.4400 15 6 2.7850 10.1539 -1.5210 16 7 2.0055 9.5960 -2.4229 17 14 3.4481 11.8782 -1.7976 18 1 4.9326 11.8413 -1.8117 19 1 2.9530 12.3963 -3.0983 20 1 2.9855 12.7681 -0.7025 21 6 2.7576 7.3176 0.9914 22 6 3.3306 5.9491 0.5643 23 1 4.2574 5.6204 1.0344 24 6 3.6590 0.6498 -0.0057 25 7 3.6340 -0.6544 -0.0042 26 7 2.3016 -1.0821 0.0026 27 6 1.8501 -2.4757 0.0055 28 6 2.4142 -3.2178 -1.2237 29 6 3.6917 -3.9148 -0.6934 30 6 3.2712 -4.3629 0.7284 31 6 2.3949 -3.2039 1.2467 32 1 -0.3634 0.0024 1.0277 33 1 -0.3634 0.8888 -0.5160 34 1 -0.3634 -0.8912 -0.5118 35 1 3.7462 3.2973 -0.0095 36 1 1.2993 7.0686 -1.3172 37 1 2.7238 7.5595 -2.2849 38 1 1.7758 10.0802 -3.2316 39 1 1.7341 7.2061 1.3495 40 1 3.3836 7.7681 1.7617 41 1 4.5449 1.2675 -0.0103 42 1 0.7608 -2.5151 -0.0022 43 1 1.6986 -3.9563 -1.5851 44 1 2.6657 -2.5104 -2.0140 45 1 4.5239 -3.2125 -0.6468 46 1 3.9460 -4.7765 -1.3106 47 1 4.1482 -4.4913 1.3628 48 1 2.6941 -5.2864 0.6823 49 1 2.9961 -2.5206 1.8465 50 1 1.5701 -3.5966 1.8414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962255779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:44 Heat of formation + Delta-G solvation = 91.068154 kcal Electronic energy + Delta-G solvation = -29451.200489 eV Core-core repulsion = 25481.332861 eV Total energy + Delta-G solvation = -3969.867628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.78380 -39.50256 -38.41315 -37.84011 -34.43660 -33.28251 -32.48124 -31.71426 -30.21485 -29.29122 -28.09781 -27.43618 -27.08984 -25.56695 -23.07127 -22.53631 -21.36135 -21.10762 -20.37711 -19.64911 -19.40003 -19.21658 -17.56042 -16.86975 -16.62683 -16.02335 -15.81244 -15.68897 -15.12117 -14.69335 -14.33767 -14.26178 -14.12417 -13.74369 -13.55357 -13.33885 -13.12613 -13.02964 -12.70219 -12.43770 -12.30024 -12.13158 -12.02917 -11.65791 -11.60378 -11.49246 -11.48621 -11.39790 -11.13057 -10.96885 -10.89418 -10.78658 -10.34586 -10.16888 -10.11003 -9.70689 -9.66357 -9.58968 -9.12427 -8.81384 -8.67765 -8.18183 -6.82818 -5.75843 -3.10158 1.36727 2.02439 2.05013 3.31870 3.41963 3.45769 3.47074 3.49041 3.82330 3.99139 4.21133 4.34582 4.41271 4.48291 4.51331 4.68541 4.76948 4.88835 4.89526 4.96164 5.11813 5.14486 5.23428 5.27345 5.29552 5.32320 5.40568 5.42553 5.46950 5.47687 5.60738 5.64087 5.64780 5.72332 5.88025 5.89861 5.90217 5.95992 6.21950 6.25194 6.36226 6.58318 6.67236 6.73593 6.93120 6.94371 7.36974 7.41633 7.58127 7.75001 7.76169 8.24720 8.46927 9.14548 9.77379 10.54876 11.38358 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.032060 B = 0.001793 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.161335 B =15615.480436 C =15762.660721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.156 3.844 3 C -0.294 4.294 4 C 0.597 3.403 5 O -0.547 6.547 6 N -0.694 5.694 7 C 0.101 3.899 8 H 0.132 0.868 9 C -0.179 4.179 10 H 0.101 0.899 11 C 0.186 3.814 12 N -0.593 5.593 13 C -0.227 4.227 14 H 0.076 0.924 15 C -0.006 4.006 16 N -0.915 5.915 17 Si 0.913 3.087 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.156 3.844 22 C -0.185 4.185 23 H 0.103 0.897 24 C 0.079 3.921 25 N -0.291 5.291 26 N -0.353 5.353 27 C 0.150 3.850 28 C -0.130 4.130 29 C -0.122 4.122 30 C -0.121 4.121 31 C -0.131 4.131 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.396 0.604 36 H 0.026 0.974 37 H 0.090 0.910 38 H 0.255 0.745 39 H 0.027 0.973 40 H 0.051 0.949 41 H 0.187 0.813 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -30.380 5.172 30.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.024 3.976 3 C -0.308 4.308 4 C 0.385 3.615 5 O -0.426 6.426 6 N -0.342 5.342 7 C -0.005 4.005 8 H 0.149 0.851 9 C -0.201 4.201 10 H 0.119 0.881 11 C 0.060 3.940 12 N -0.317 5.317 13 C -0.355 4.355 14 H 0.094 0.906 15 C -0.203 4.203 16 N -0.561 5.561 17 Si 0.743 3.257 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.210 1.210 21 C 0.029 3.971 22 C -0.206 4.206 23 H 0.121 0.879 24 C -0.108 4.108 25 N -0.110 5.110 26 N -0.134 5.134 27 C 0.049 3.951 28 C -0.168 4.168 29 C -0.160 4.160 30 C -0.158 4.158 31 C -0.169 4.169 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.044 0.956 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.204 0.796 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.909 -31.165 5.017 31.579 hybrid contribution 0.590 1.492 -0.185 1.615 sum 1.499 -29.673 4.832 30.101 Atomic orbital electron populations 1.20708 0.86211 1.04808 1.04153 1.21519 0.94906 0.86278 0.94905 1.19998 0.92886 0.93460 1.24503 1.17134 0.85456 0.83428 0.75453 1.90731 1.16519 1.84178 1.51155 1.45109 1.09155 1.05105 1.74804 1.21792 0.98100 0.76858 1.03760 0.85081 1.24718 1.03514 0.99309 0.92568 0.88094 1.21058 0.95098 0.83053 0.94830 1.45168 1.79272 1.06401 1.00830 1.18937 1.30477 0.83815 1.02315 0.90613 1.24904 0.98873 0.98285 0.98237 1.69896 1.37857 1.37644 1.10675 0.86190 0.78504 0.83810 0.77181 1.21123 1.21564 1.20996 1.21121 0.97213 0.87986 0.90788 1.24264 1.00554 0.97295 0.98466 0.87919 1.24023 0.97159 0.92134 0.97528 1.77117 0.96299 1.12798 1.24770 1.48656 1.03915 1.05565 1.55222 1.22131 0.99238 0.76371 0.97372 1.22703 0.98288 0.99430 0.96382 1.22506 0.97754 1.00095 0.95633 1.22330 0.99399 0.97338 0.96763 1.22518 1.00234 0.97875 0.96300 0.89565 0.87244 0.91365 0.77016 0.95567 0.89169 0.93497 0.95541 0.93047 0.79585 0.87490 0.89929 0.90582 0.90286 0.91345 0.91184 0.91387 0.90238 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.40 36.00 0.34 -0.57 16 2 C 0.16 1.72 7.01 -81.60 -0.57 1.15 16 3 C -0.29 -3.67 6.13 -105.07 -0.64 -4.31 16 4 C 0.60 9.01 7.81 -12.52 -0.10 8.91 16 5 O -0.55 -9.93 14.41 5.28 0.08 -9.86 16 6 N -0.69 -9.82 5.55 -54.89 -0.30 -10.12 16 7 C 0.10 1.74 5.98 -67.93 -0.41 1.34 16 8 H 0.13 2.56 7.40 -51.93 -0.38 2.18 16 9 C -0.18 -3.48 7.05 -89.27 -0.63 -4.11 16 10 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 11 C 0.19 4.56 5.70 -2.38 -0.01 4.54 16 12 N -0.59 -15.39 3.38 -168.82 -0.57 -15.96 16 13 C -0.23 -6.38 10.35 -15.06 -0.16 -6.53 16 14 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 15 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 16 N -0.91 -27.07 10.86 55.49 0.60 -26.47 16 17 Si 0.91 22.07 29.56 -169.99 -5.03 17.04 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.16 3.32 7.04 -2.41 -0.02 3.30 16 22 C -0.18 -3.30 7.05 -89.29 -0.63 -3.93 16 23 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 24 C 0.08 0.85 11.50 -16.98 -0.20 0.65 16 25 N -0.29 -3.20 12.24 30.86 0.38 -2.82 16 26 N -0.35 -3.45 3.14 -49.09 -0.15 -3.60 16 27 C 0.15 1.01 3.67 -66.82 -0.25 0.77 16 28 C -0.13 -0.80 6.46 -25.07 -0.16 -0.96 16 29 C -0.12 -0.74 6.91 -24.73 -0.17 -0.91 16 30 C -0.12 -0.63 6.83 -25.07 -0.17 -0.80 16 31 C -0.13 -0.79 6.54 -25.61 -0.17 -0.96 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.11 1.24 6.51 -51.93 -0.34 0.90 16 34 H 0.07 0.43 7.08 -51.93 -0.37 0.06 16 35 H 0.40 4.44 7.78 -40.82 -0.32 4.12 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 2.46 6.51 -51.93 -0.34 2.12 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.19 1.43 7.50 -52.49 -0.39 1.04 16 42 H 0.11 0.52 6.67 -51.93 -0.35 0.17 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.08 0.65 7.82 -51.93 -0.41 0.24 16 50 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 400.48 15.07 6.04 6.04 Total: -1.00 -33.60 400.48 -10.92 -44.52 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.93 Total: 3.93 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -4.03 Total: -2.69 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.05 Total: -58.98 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.60 -10.92 -44.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962255779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.591 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds