Wall clock time and date at job start Wed Apr 1 2020 03:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38048 * 126.29191 * 2 1 4 4 C 1.47429 * 126.41658 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99663 * 0.27648 * 4 3 2 6 6 N 1.34767 * 120.00155 * 180.28073 * 4 3 2 7 7 C 1.46505 * 120.00420 * 179.97438 * 6 4 3 8 8 H 1.08996 * 115.51052 * 9.41428 * 7 6 4 9 9 C 1.52993 * 117.44284 * 224.00219 * 7 6 4 10 10 H 1.09000 * 119.54513 * 4.11512 * 9 7 6 11 11 C 1.54439 * 118.08871 * 160.74079 * 9 7 6 12 12 N 1.48149 * 104.56211 * 87.29347 * 11 9 7 13 13 C 1.36928 * 127.84253 * 140.39860 * 12 11 9 14 14 H 1.08002 * 120.00218 * 195.57710 * 13 12 11 15 15 C 1.38812 * 120.00059 * 15.57304 * 13 12 11 16 16 N 1.31622 * 119.99772 * 9.10397 * 15 13 12 17 17 Si 1.86802 * 120.00245 * 189.09654 * 15 13 12 18 18 H 1.48504 * 109.46951 * 60.00157 * 17 15 13 19 19 H 1.48506 * 109.47087 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47220 * 300.00265 * 17 15 13 21 21 C 1.48147 * 104.31926 * 320.40232 * 12 11 9 22 22 C 1.52993 * 117.44337 * 154.82844 * 7 6 4 23 23 H 1.08998 * 119.54709 * 354.29335 * 22 7 6 24 24 C 1.41288 * 107.16892 * 180.24360 * 3 2 1 25 25 N 1.30448 * 108.02495 * 359.77915 * 24 3 2 26 26 N 1.34253 * 126.29143 * 179.86103 * 2 1 3 27 27 C 1.46498 * 125.75537 * 0.02562 * 26 2 1 28 28 C 1.54265 * 110.07881 * 121.82898 * 27 26 2 29 29 C 1.54891 * 104.19671 * 95.69458 * 28 27 26 30 30 C 1.54895 * 102.74391 * 37.94852 * 29 28 27 31 31 C 1.53872 * 110.03554 * 239.02519 * 27 26 2 32 32 H 1.09006 * 109.47301 * 270.13576 * 1 2 3 33 33 H 1.09007 * 109.47111 * 30.13501 * 1 2 3 34 34 H 1.08999 * 109.47283 * 150.13217 * 1 2 3 35 35 H 0.97001 * 120.00391 * 359.97438 * 6 4 3 36 36 H 1.08996 * 110.44725 * 328.52054 * 11 9 7 37 37 H 1.09002 * 110.42246 * 206.05087 * 11 9 7 38 38 H 0.97006 * 119.99806 * 180.02562 * 16 15 13 39 39 H 1.09001 * 110.40928 * 280.79694 * 21 12 11 40 40 H 1.09002 * 110.40751 * 158.37287 * 21 12 11 41 41 H 1.08000 * 125.99301 * 179.79914 * 24 3 2 42 42 H 1.09003 * 110.01964 * 0.41162 * 27 26 2 43 43 H 1.09002 * 110.49162 * 214.37802 * 28 27 26 44 44 H 1.09002 * 110.48239 * 337.01996 * 28 27 26 45 45 H 1.08996 * 110.76076 * 279.63376 * 29 28 27 46 46 H 1.09000 * 110.75367 * 156.25965 * 29 28 27 47 47 H 1.08995 * 110.48352 * 203.37578 * 30 29 28 48 48 H 1.09000 * 110.48370 * 80.73599 * 30 29 28 49 49 H 1.09000 * 110.02920 * 359.94659 * 31 27 26 50 50 H 1.08999 * 110.03978 * 121.38121 * 31 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 0.0041 6 7 2.7999 3.5107 -0.0062 7 6 2.3645 4.9095 -0.0073 8 1 1.2991 5.0696 0.1576 9 6 3.0837 5.8711 -0.9553 10 1 3.8387 5.4859 -1.6407 11 6 2.3815 7.1987 -1.3150 12 7 2.7868 8.1370 -0.2425 13 6 3.1142 9.4609 -0.3641 14 1 3.6286 9.9661 0.4400 15 6 2.7850 10.1539 -1.5210 16 7 2.0055 9.5960 -2.4229 17 14 3.4481 11.8782 -1.7976 18 1 4.9326 11.8413 -1.8117 19 1 2.9530 12.3963 -3.0983 20 1 2.9855 12.7681 -0.7025 21 6 2.7576 7.3176 0.9914 22 6 3.3306 5.9491 0.5643 23 1 4.2574 5.6204 1.0344 24 6 3.6590 0.6498 -0.0057 25 7 3.6340 -0.6544 -0.0042 26 7 2.3016 -1.0821 0.0026 27 6 1.8501 -2.4757 0.0055 28 6 2.4142 -3.2178 -1.2237 29 6 3.6917 -3.9148 -0.6934 30 6 3.2712 -4.3629 0.7284 31 6 2.3949 -3.2039 1.2467 32 1 -0.3634 0.0024 1.0277 33 1 -0.3634 0.8888 -0.5160 34 1 -0.3634 -0.8912 -0.5118 35 1 3.7462 3.2973 -0.0095 36 1 1.2993 7.0686 -1.3172 37 1 2.7238 7.5595 -2.2849 38 1 1.7758 10.0802 -3.2316 39 1 1.7341 7.2061 1.3495 40 1 3.3836 7.7681 1.7617 41 1 4.5449 1.2675 -0.0103 42 1 0.7608 -2.5151 -0.0022 43 1 1.6986 -3.9563 -1.5851 44 1 2.6657 -2.5104 -2.0140 45 1 4.5239 -3.2125 -0.6468 46 1 3.9460 -4.7765 -1.3106 47 1 4.1482 -4.4913 1.3628 48 1 2.6941 -5.2864 0.6823 49 1 2.9961 -2.5206 1.8465 50 1 1.5701 -3.5966 1.8414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962255779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:42 Heat of formation + Delta-G solvation = 70.670651 kcal Electronic energy + Delta-G solvation = -29452.084991 eV Core-core repulsion = 25481.332861 eV Total energy + Delta-G solvation = -3970.752130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.59085 -40.88041 -39.58356 -38.67357 -36.05196 -34.47507 -33.77040 -32.62713 -31.92072 -29.74074 -28.94661 -28.83326 -28.19441 -27.44332 -24.33658 -23.28568 -22.79257 -21.88694 -21.61099 -20.91639 -20.72088 -20.08136 -18.85154 -18.43274 -17.63444 -17.21591 -16.70553 -16.55506 -16.35326 -15.82642 -15.66251 -15.38858 -15.16525 -14.92891 -14.79618 -14.61112 -14.28278 -14.08190 -13.73034 -13.69266 -13.32022 -13.20130 -13.15243 -12.87870 -12.83129 -12.66272 -12.54696 -12.14080 -12.09320 -12.04553 -12.04102 -12.00098 -11.85077 -11.78030 -11.61445 -11.48011 -10.91286 -10.78598 -10.68127 -10.34111 -9.83506 -9.45313 -8.90926 -7.89957 -5.27104 0.48736 1.16504 1.31388 1.47532 1.51181 1.57807 2.11405 2.36213 2.50498 2.94850 3.27640 3.31452 3.51736 3.55008 3.62890 3.70068 3.86950 3.89412 3.96667 4.00511 4.12171 4.18752 4.26211 4.40495 4.43385 4.45043 4.46874 4.54860 4.57613 4.64030 4.70998 4.82573 4.84685 4.91626 4.94349 4.98479 5.01567 5.04524 5.16384 5.19477 5.25678 5.31088 5.40307 5.44669 5.47739 5.49816 5.60835 5.66039 5.95943 6.17947 6.52495 6.67412 7.01193 7.32006 7.68775 8.47550 9.23781 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.032060 B = 0.001793 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.161335 B =15615.480436 C =15762.660721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.155 3.845 3 C -0.319 4.319 4 C 0.597 3.403 5 O -0.585 6.585 6 N -0.681 5.681 7 C 0.122 3.878 8 H 0.106 0.894 9 C -0.185 4.185 10 H 0.120 0.880 11 C 0.190 3.810 12 N -0.617 5.617 13 C -0.241 4.241 14 H 0.084 0.916 15 C -0.065 4.065 16 N -0.949 5.949 17 Si 0.983 3.017 18 H -0.275 1.275 19 H -0.295 1.295 20 H -0.275 1.275 21 C 0.148 3.852 22 C -0.160 4.160 23 H 0.140 0.860 24 C 0.083 3.917 25 N -0.306 5.306 26 N -0.346 5.346 27 C 0.138 3.862 28 C -0.126 4.126 29 C -0.123 4.123 30 C -0.116 4.116 31 C -0.128 4.128 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.414 0.586 36 H -0.005 1.005 37 H 0.056 0.944 38 H 0.250 0.750 39 H 0.020 0.980 40 H 0.066 0.934 41 H 0.213 0.787 42 H 0.131 0.869 43 H 0.108 0.892 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.055 0.945 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -32.784 6.259 33.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.022 3.978 3 C -0.334 4.334 4 C 0.387 3.613 5 O -0.466 6.466 6 N -0.330 5.330 7 C 0.015 3.985 8 H 0.124 0.876 9 C -0.207 4.207 10 H 0.138 0.862 11 C 0.064 3.936 12 N -0.341 5.341 13 C -0.370 4.370 14 H 0.102 0.898 15 C -0.258 4.258 16 N -0.597 5.597 17 Si 0.811 3.189 18 H -0.201 1.201 19 H -0.221 1.221 20 H -0.200 1.200 21 C 0.022 3.978 22 C -0.181 4.181 23 H 0.158 0.842 24 C -0.105 4.105 25 N -0.124 5.124 26 N -0.126 5.126 27 C 0.038 3.962 28 C -0.164 4.164 29 C -0.161 4.161 30 C -0.154 4.154 31 C -0.166 4.166 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.251 0.749 36 H 0.012 0.988 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.084 0.916 41 H 0.229 0.771 42 H 0.149 0.851 43 H 0.126 0.874 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.106 0.894 49 H 0.074 0.926 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.102 -33.626 6.139 34.247 hybrid contribution 0.164 2.132 -0.482 2.192 sum 2.265 -31.495 5.656 32.079 Atomic orbital electron populations 1.20723 0.85010 1.05104 1.04791 1.21823 0.95797 0.86413 0.93815 1.19872 0.94189 0.92231 1.27101 1.17516 0.84919 0.84452 0.74443 1.90718 1.18136 1.84832 1.52890 1.44884 1.10169 1.03386 1.74554 1.21320 0.96819 0.78433 1.01907 0.87587 1.24396 1.04272 0.98003 0.94019 0.86187 1.20763 0.93659 0.85698 0.93447 1.45475 1.79317 1.06510 1.02809 1.19373 1.30016 0.85069 1.02520 0.89810 1.25798 0.99481 1.02413 0.98155 1.70112 1.39443 1.39116 1.10995 0.85094 0.78089 0.79015 0.76751 1.20075 1.22111 1.20032 1.21281 0.97439 0.89375 0.89669 1.24185 1.01584 0.95630 0.96682 0.84204 1.24419 0.97317 0.92210 0.96564 1.77107 0.97232 1.12972 1.25134 1.48922 1.03323 1.06388 1.53924 1.22570 1.00728 0.74867 0.98008 1.22712 0.98845 0.99405 0.95456 1.22487 0.97031 0.99984 0.96587 1.22328 0.99387 0.97781 0.95879 1.22507 1.00674 0.97567 0.95870 0.88651 0.89758 0.88221 0.74864 0.98750 0.92527 0.94137 0.96256 0.91561 0.77070 0.85093 0.87415 0.92620 0.92640 0.90197 0.91582 0.89433 0.92575 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 9.40 71.24 0.67 -0.98 16 2 C 0.16 3.24 7.01 42.14 0.30 3.54 16 3 C -0.32 -7.66 6.13 -20.15 -0.12 -7.79 16 4 C 0.60 17.73 7.81 86.67 0.68 18.40 16 5 O -0.58 -21.60 14.41 -4.04 -0.06 -21.66 16 6 N -0.68 -18.31 5.55 -445.83 -2.48 -20.79 16 7 C 0.12 4.17 5.98 44.99 0.27 4.44 16 8 H 0.11 4.26 7.40 -2.39 -0.02 4.24 16 9 C -0.19 -7.14 7.05 -9.92 -0.07 -7.21 16 10 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 11 C 0.19 9.75 5.70 86.55 0.49 10.25 16 12 N -0.62 -32.63 3.38 -688.04 -2.32 -34.95 16 13 C -0.24 -13.70 10.35 84.03 0.87 -12.83 16 14 H 0.08 4.50 7.85 -2.91 -0.02 4.47 16 15 C -0.06 -3.75 5.40 84.86 0.46 -3.29 16 16 N -0.95 -58.34 10.86 21.65 0.24 -58.11 16 17 Si 0.98 45.97 29.56 68.60 2.03 48.00 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 C 0.15 6.24 7.04 86.54 0.61 6.85 16 22 C -0.16 -5.45 7.05 -9.93 -0.07 -5.52 16 23 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 24 C 0.08 1.64 11.50 85.65 0.99 2.62 16 25 N -0.31 -6.34 12.24 -56.28 -0.69 -7.02 16 26 N -0.35 -6.20 3.14 -309.22 -0.97 -7.17 16 27 C 0.14 1.52 3.67 45.71 0.17 1.69 16 28 C -0.13 -1.26 6.46 31.67 0.20 -1.06 16 29 C -0.12 -1.28 6.91 31.89 0.22 -1.06 16 30 C -0.12 -0.94 6.83 31.67 0.22 -0.72 16 31 C -0.13 -1.26 6.54 31.32 0.20 -1.05 16 32 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.08 1.92 6.51 -2.38 -0.02 1.90 16 34 H 0.10 0.99 7.08 -2.39 -0.02 0.97 16 35 H 0.41 8.19 7.78 -92.71 -0.72 7.46 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.06 3.25 6.51 -2.39 -0.02 3.23 16 38 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 39 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.21 2.74 7.50 -2.91 -0.02 2.72 16 42 H 0.13 0.80 6.67 -2.39 -0.02 0.78 16 43 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.05 0.81 8.04 -2.39 -0.02 0.79 16 45 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.06 0.84 7.82 -2.39 -0.02 0.82 16 50 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -76.50 400.48 2.06 -74.45 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.23 Total: 20.98 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.08 Total: 6.28 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -6.22 Total: -128.05 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.06 Total: -21.66 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -76.50 2.06 -74.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962255779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.120 kcal (2) G-P(sol) polarization free energy of solvation -76.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds