Wall clock time and date at job start Wed Apr 1 2020 04:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38769 * 119.90687 * 2 1 4 4 N 1.31771 * 120.12693 * 179.97438 * 3 2 1 5 5 C 1.33033 * 119.92393 * 0.02650 * 4 3 2 6 6 C 1.48147 * 120.09281 * 179.97438 * 5 4 3 7 7 O 1.21521 * 119.99951 * 195.36915 * 6 5 4 8 8 N 1.34777 * 120.00386 * 15.37584 * 6 5 4 9 9 C 1.46924 * 120.62828 * 6.97185 * 8 6 5 10 10 C 1.53188 * 108.77979 * 126.41511 * 9 8 6 11 11 C 1.53041 * 109.31145 * 54.63168 * 10 9 8 12 12 C 1.53040 * 109.54087 * 298.63868 * 11 10 9 13 13 H 1.08997 * 109.52544 * 301.39718 * 12 11 10 14 14 C 1.52996 * 109.49800 * 181.31343 * 12 11 10 15 15 H 1.09003 * 109.87188 * 179.88141 * 14 12 11 16 16 C 1.54319 * 110.01327 * 300.98426 * 14 12 11 17 17 C 1.55157 * 102.94430 * 141.68316 * 16 14 12 18 18 C 1.55138 * 101.48423 * 324.33361 * 17 16 14 19 19 N 1.47023 * 109.88241 * 58.87081 * 14 12 11 20 20 C 1.36936 * 125.64727 * 61.44716 * 19 14 12 21 21 H 1.08004 * 120.00010 * 14.76257 * 20 19 14 22 22 C 1.38810 * 120.00273 * 194.75765 * 20 19 14 23 23 N 1.31622 * 119.99549 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00385 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46970 * 269.99575 * 24 22 20 26 26 H 1.48498 * 109.47368 * 29.99588 * 24 22 20 27 27 H 1.48500 * 109.47259 * 150.00099 * 24 22 20 28 28 C 1.46921 * 120.63355 * 186.99362 * 8 6 5 29 29 C 1.39397 * 119.80984 * 0.27205 * 5 4 3 30 30 N 1.32109 * 119.87709 * 359.40995 * 29 5 4 31 31 H 1.08999 * 109.47073 * 89.99834 * 1 2 3 32 32 H 1.09002 * 109.46784 * 209.99765 * 1 2 3 33 33 H 1.08996 * 109.46805 * 329.99446 * 1 2 3 34 34 H 1.08008 * 119.93591 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.58476 * 246.20606 * 9 8 6 36 36 H 1.09006 * 109.59012 * 6.62395 * 9 8 6 37 37 H 1.09001 * 109.50009 * 174.58080 * 10 9 8 38 38 H 1.08998 * 109.49489 * 294.65080 * 10 9 8 39 39 H 1.09001 * 109.46166 * 178.61711 * 11 10 9 40 40 H 1.09002 * 109.45775 * 58.65738 * 11 10 9 41 41 H 1.09000 * 110.72191 * 260.04538 * 16 14 12 42 42 H 1.08997 * 110.72061 * 23.31909 * 16 14 12 43 43 H 1.09006 * 111.00215 * 82.57072 * 17 16 14 44 44 H 1.08995 * 111.00833 * 206.38231 * 17 16 14 45 45 H 1.09000 * 110.49532 * 278.45228 * 18 17 16 46 46 H 1.08997 * 110.33914 * 156.05718 * 18 17 16 47 47 H 0.97005 * 119.99802 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58645 * 113.79732 * 28 8 6 49 49 H 1.09006 * 109.58613 * 353.37393 * 28 8 6 50 50 H 1.07999 * 120.06325 * 179.70594 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2029 0.0000 4 7 3.5166 1.2080 0.0005 5 6 4.1847 0.0575 0.0005 6 6 5.6661 0.0589 0.0005 7 8 6.2746 -0.9554 -0.2785 8 7 6.3391 1.1848 0.3100 9 6 5.6256 2.3736 0.7962 10 6 6.2563 2.8207 2.1187 11 6 7.7592 3.0280 1.9182 12 6 8.4064 1.7067 1.4967 13 1 8.2231 0.9512 2.2606 14 6 9.9138 1.9073 1.3282 15 1 10.3814 0.9690 1.0299 16 6 10.1867 2.9913 0.2643 17 6 11.4027 3.7558 0.8510 18 6 11.0927 3.7099 2.3704 19 7 10.4998 2.3784 2.5917 20 6 10.4911 1.6960 3.7788 21 1 10.2470 0.6441 3.7952 22 6 10.7961 2.3562 4.9612 23 7 11.0942 3.6381 4.9411 24 14 10.7849 1.4252 6.5805 25 1 9.4290 1.4948 7.1822 26 1 11.1465 0.0055 6.3379 27 1 11.7703 2.0352 7.5091 28 6 7.8000 1.2471 0.1671 29 6 3.4867 -1.1491 -0.0058 30 7 2.1657 -1.1453 0.0001 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6563 2.1368 -0.0004 35 1 5.7087 3.1752 0.0623 36 1 4.5754 2.1295 0.9563 37 1 5.7999 3.7565 2.4415 38 1 6.0921 2.0552 2.8771 39 1 8.2064 3.3698 2.8516 40 1 7.9223 3.7760 1.1423 41 1 10.4423 2.5367 -0.6928 42 1 9.3280 3.6545 0.1603 43 1 12.3355 3.2396 0.6234 44 1 11.4294 4.7838 0.4897 45 1 10.3814 4.4912 2.6385 46 1 12.0108 3.8171 2.9478 47 1 11.3069 4.0996 5.7673 48 1 8.0605 1.9568 -0.6181 49 1 8.1846 0.2595 -0.0879 50 1 4.0249 -2.0854 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963248552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:30 Heat of formation + Delta-G solvation = 50.308078 kcal Electronic energy + Delta-G solvation = -31113.673157 eV Core-core repulsion = 27142.038040 eV Total energy + Delta-G solvation = -3971.635117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.72893 -39.88410 -38.28155 -36.44956 -35.09877 -33.22087 -32.79297 -32.19940 -31.16090 -29.35031 -28.90047 -26.66524 -25.43770 -25.01461 -24.48499 -23.46506 -22.50104 -21.38571 -20.41015 -19.67180 -18.36798 -18.24791 -17.16755 -16.62898 -16.51117 -15.99001 -15.66598 -15.22312 -15.00086 -14.77289 -14.45832 -14.15379 -13.96106 -13.83076 -13.43038 -13.23187 -13.10595 -12.93443 -12.80659 -12.72092 -12.36366 -12.09745 -11.87637 -11.68077 -11.51889 -11.38471 -11.07538 -10.85167 -10.81928 -10.56561 -10.37505 -10.23408 -10.19314 -10.06745 -9.88593 -9.70512 -9.62632 -9.59432 -9.40431 -9.09614 -8.54835 -8.41422 -6.72992 -5.71915 -3.06098 0.06673 0.64856 2.54370 2.87921 3.39641 3.40294 3.46563 3.47709 3.62090 3.71374 4.00668 4.34354 4.51185 4.58224 4.68641 5.04404 5.08328 5.14284 5.20046 5.26303 5.30342 5.36790 5.46481 5.50526 5.57018 5.71357 5.76931 5.80326 5.84991 5.88456 5.95303 5.97686 6.15461 6.19451 6.27198 6.32856 6.40221 6.52031 6.59050 6.66864 6.71790 6.74974 6.82328 7.04324 7.08504 7.20326 7.25351 7.46490 7.58680 7.66856 7.84240 8.06531 8.32407 9.24208 9.85195 10.54588 11.40113 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.002884 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.832745 B = 9705.613023 C =10431.909404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.098 3.902 3 C 0.043 3.957 4 N -0.397 5.397 5 C 0.027 3.973 6 C 0.570 3.430 7 O -0.535 6.535 8 N -0.581 5.581 9 C 0.088 3.912 10 C -0.136 4.136 11 C -0.105 4.105 12 C -0.103 4.103 13 H 0.071 0.929 14 C 0.168 3.832 15 H 0.033 0.967 16 C -0.130 4.130 17 C -0.150 4.150 18 C 0.175 3.825 19 N -0.590 5.590 20 C -0.222 4.222 21 H 0.072 0.928 22 C -0.004 4.004 23 N -0.918 5.918 24 Si 0.905 3.095 25 H -0.289 1.289 26 H -0.281 1.281 27 H -0.291 1.291 28 C 0.113 3.887 29 C 0.116 3.884 30 N -0.442 5.442 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.177 0.823 35 H 0.065 0.935 36 H 0.122 0.878 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.025 0.975 46 H 0.068 0.932 47 H 0.251 0.749 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.977 -1.031 -12.069 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.044 4.044 3 C -0.119 4.119 4 N -0.115 5.115 5 C -0.113 4.113 6 C 0.355 3.645 7 O -0.412 6.412 8 N -0.311 5.311 9 C -0.034 4.034 10 C -0.174 4.174 11 C -0.143 4.143 12 C -0.125 4.125 13 H 0.089 0.911 14 C 0.059 3.941 15 H 0.051 0.949 16 C -0.168 4.168 17 C -0.188 4.188 18 C 0.050 3.950 19 N -0.314 5.314 20 C -0.350 4.350 21 H 0.090 0.910 22 C -0.201 4.201 23 N -0.565 5.565 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.207 1.207 27 H -0.218 1.218 28 C -0.009 4.009 29 C -0.044 4.044 30 N -0.157 5.157 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.194 0.806 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.106 0.894 50 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -18.513 -1.536 -11.975 22.102 hybrid contribution -0.047 -0.282 1.030 1.069 sum -18.561 -1.818 -10.945 21.624 Atomic orbital electron populations 1.20764 0.87266 1.04371 1.03808 1.22660 0.98835 0.89735 0.93151 1.23851 0.90616 0.99567 0.97868 1.68574 1.08488 1.27692 1.06718 1.22277 0.96123 0.90941 1.01938 1.17646 0.84804 0.83686 0.78368 1.90796 1.68186 1.31907 1.50276 1.48023 1.08283 1.12468 1.62337 1.22649 0.98653 0.86609 0.95528 1.21991 0.97704 1.01081 0.96673 1.21496 0.92878 0.96795 1.03115 1.21952 0.97526 0.97899 0.95107 0.91091 1.20884 0.89982 0.95291 0.87922 0.94902 1.22693 0.98674 0.98195 0.97252 1.23046 0.97109 0.98433 1.00259 1.21446 0.98019 0.86852 0.88686 1.44473 1.63554 1.18118 1.05225 1.18942 1.41002 0.92143 0.82954 0.90990 1.24845 1.02134 0.95669 0.97429 1.69937 1.52665 1.07983 1.25881 0.86220 0.77308 0.78915 0.83965 1.21683 1.20693 1.21768 1.21930 0.77439 1.02765 0.98787 1.23813 0.89839 0.99318 0.91407 1.68484 1.08289 1.29014 1.09928 0.89535 0.89828 0.89795 0.80607 0.91640 0.86127 0.91355 0.92192 0.89451 0.92734 0.92615 0.91459 0.92500 0.92647 0.95749 0.91348 0.93822 0.91294 0.89382 0.80004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 10.19 36.01 0.37 -0.09 16 2 C 0.10 0.80 6.79 -82.27 -0.56 0.24 16 3 C 0.04 0.34 10.88 -17.38 -0.19 0.16 16 4 N -0.40 -4.37 6.51 -9.61 -0.06 -4.43 16 5 C 0.03 0.35 6.47 -82.85 -0.54 -0.19 16 6 C 0.57 8.79 7.64 -12.19 -0.09 8.70 16 7 O -0.53 -9.54 15.87 5.35 0.08 -9.45 16 8 N -0.58 -8.72 2.97 -173.77 -0.52 -9.24 16 9 C 0.09 1.16 5.85 -3.71 -0.02 1.14 16 10 C -0.14 -2.02 6.08 -26.61 -0.16 -2.18 16 11 C -0.11 -1.85 4.74 -26.69 -0.13 -1.98 16 12 C -0.10 -1.89 2.11 -90.50 -0.19 -2.08 16 13 H 0.07 1.50 8.02 -51.93 -0.42 1.08 16 14 C 0.17 3.34 2.94 -66.96 -0.20 3.15 16 15 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 16 C -0.13 -2.21 5.12 -24.90 -0.13 -2.34 16 17 C -0.15 -2.78 7.10 -24.46 -0.17 -2.95 16 18 C 0.17 4.10 5.42 -2.41 -0.01 4.09 16 19 N -0.59 -14.32 2.32 -162.44 -0.38 -14.70 16 20 C -0.22 -6.00 9.82 -15.06 -0.15 -6.15 16 21 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 22 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 16 23 N -0.92 -26.30 10.57 55.49 0.59 -25.72 16 24 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 28 C 0.11 1.79 5.59 -3.71 -0.02 1.77 16 29 C 0.12 1.35 10.77 -17.00 -0.18 1.17 16 30 N -0.44 -4.73 10.41 -8.95 -0.09 -4.82 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.19 8.08 -51.93 -0.42 -0.23 16 34 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.12 1.49 4.21 -70.91 -0.30 1.19 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.92 7.55 -51.93 -0.39 1.53 16 40 H 0.05 0.90 6.09 -51.93 -0.32 0.58 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.08 5.54 -51.93 -0.29 0.80 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 46 H 0.07 1.82 6.92 -51.93 -0.36 1.46 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.07 1.00 6.98 -51.93 -0.36 0.64 16 49 H 0.09 1.49 7.00 -51.93 -0.36 1.12 16 50 H 0.18 1.98 7.72 -52.49 -0.41 1.58 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -31.64 386.16 -9.86 -41.51 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.81 Total: 1.75 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.47 Total: 2.23 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.46 Total: -58.91 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.64 -9.86 -41.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963248552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.814 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds