Wall clock time and date at job start Wed Apr 1 2020 04:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38769 * 119.90687 * 2 1 4 4 N 1.31771 * 120.12693 * 179.97438 * 3 2 1 5 5 C 1.33033 * 119.92393 * 0.02650 * 4 3 2 6 6 C 1.48147 * 120.09281 * 179.97438 * 5 4 3 7 7 O 1.21521 * 119.99951 * 195.36915 * 6 5 4 8 8 N 1.34777 * 120.00386 * 15.37584 * 6 5 4 9 9 C 1.46924 * 120.62828 * 6.97185 * 8 6 5 10 10 C 1.53188 * 108.77979 * 126.41511 * 9 8 6 11 11 C 1.53041 * 109.31145 * 54.63168 * 10 9 8 12 12 C 1.53040 * 109.54087 * 298.63868 * 11 10 9 13 13 H 1.08997 * 109.52544 * 301.39718 * 12 11 10 14 14 C 1.52996 * 109.49800 * 181.31343 * 12 11 10 15 15 H 1.09003 * 109.87188 * 179.88141 * 14 12 11 16 16 C 1.54319 * 110.01327 * 300.98426 * 14 12 11 17 17 C 1.55157 * 102.94430 * 141.68316 * 16 14 12 18 18 C 1.55138 * 101.48423 * 324.33361 * 17 16 14 19 19 N 1.47023 * 109.88241 * 58.87081 * 14 12 11 20 20 C 1.36936 * 125.64727 * 61.44716 * 19 14 12 21 21 H 1.08004 * 120.00010 * 14.76257 * 20 19 14 22 22 C 1.38810 * 120.00273 * 194.75765 * 20 19 14 23 23 N 1.31622 * 119.99549 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00385 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46970 * 269.99575 * 24 22 20 26 26 H 1.48498 * 109.47368 * 29.99588 * 24 22 20 27 27 H 1.48500 * 109.47259 * 150.00099 * 24 22 20 28 28 C 1.46921 * 120.63355 * 186.99362 * 8 6 5 29 29 C 1.39397 * 119.80984 * 0.27205 * 5 4 3 30 30 N 1.32109 * 119.87709 * 359.40995 * 29 5 4 31 31 H 1.08999 * 109.47073 * 89.99834 * 1 2 3 32 32 H 1.09002 * 109.46784 * 209.99765 * 1 2 3 33 33 H 1.08996 * 109.46805 * 329.99446 * 1 2 3 34 34 H 1.08008 * 119.93591 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.58476 * 246.20606 * 9 8 6 36 36 H 1.09006 * 109.59012 * 6.62395 * 9 8 6 37 37 H 1.09001 * 109.50009 * 174.58080 * 10 9 8 38 38 H 1.08998 * 109.49489 * 294.65080 * 10 9 8 39 39 H 1.09001 * 109.46166 * 178.61711 * 11 10 9 40 40 H 1.09002 * 109.45775 * 58.65738 * 11 10 9 41 41 H 1.09000 * 110.72191 * 260.04538 * 16 14 12 42 42 H 1.08997 * 110.72061 * 23.31909 * 16 14 12 43 43 H 1.09006 * 111.00215 * 82.57072 * 17 16 14 44 44 H 1.08995 * 111.00833 * 206.38231 * 17 16 14 45 45 H 1.09000 * 110.49532 * 278.45228 * 18 17 16 46 46 H 1.08997 * 110.33914 * 156.05718 * 18 17 16 47 47 H 0.97005 * 119.99802 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58645 * 113.79732 * 28 8 6 49 49 H 1.09006 * 109.58613 * 353.37393 * 28 8 6 50 50 H 1.07999 * 120.06325 * 179.70594 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2029 0.0000 4 7 3.5166 1.2080 0.0005 5 6 4.1847 0.0575 0.0005 6 6 5.6661 0.0589 0.0005 7 8 6.2746 -0.9554 -0.2785 8 7 6.3391 1.1848 0.3100 9 6 5.6256 2.3736 0.7962 10 6 6.2563 2.8207 2.1187 11 6 7.7592 3.0280 1.9182 12 6 8.4064 1.7067 1.4967 13 1 8.2231 0.9512 2.2606 14 6 9.9138 1.9073 1.3282 15 1 10.3814 0.9690 1.0299 16 6 10.1867 2.9913 0.2643 17 6 11.4027 3.7558 0.8510 18 6 11.0927 3.7099 2.3704 19 7 10.4998 2.3784 2.5917 20 6 10.4911 1.6960 3.7788 21 1 10.2470 0.6441 3.7952 22 6 10.7961 2.3562 4.9612 23 7 11.0942 3.6381 4.9411 24 14 10.7849 1.4252 6.5805 25 1 9.4290 1.4948 7.1822 26 1 11.1465 0.0055 6.3379 27 1 11.7703 2.0352 7.5091 28 6 7.8000 1.2471 0.1671 29 6 3.4867 -1.1491 -0.0058 30 7 2.1657 -1.1453 0.0001 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6563 2.1368 -0.0004 35 1 5.7087 3.1752 0.0623 36 1 4.5754 2.1295 0.9563 37 1 5.7999 3.7565 2.4415 38 1 6.0921 2.0552 2.8771 39 1 8.2064 3.3698 2.8516 40 1 7.9223 3.7760 1.1423 41 1 10.4423 2.5367 -0.6928 42 1 9.3280 3.6545 0.1603 43 1 12.3355 3.2396 0.6234 44 1 11.4294 4.7838 0.4897 45 1 10.3814 4.4912 2.6385 46 1 12.0108 3.8171 2.9478 47 1 11.3069 4.0996 5.7673 48 1 8.0605 1.9568 -0.6181 49 1 8.1846 0.2595 -0.0879 50 1 4.0249 -2.0854 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963248552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:29 Heat of formation + Delta-G solvation = 31.409620 kcal Electronic energy + Delta-G solvation = -31114.492656 eV Core-core repulsion = 27142.038040 eV Total energy + Delta-G solvation = -3972.454616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.56307 -41.09179 -39.74943 -37.84983 -35.94065 -34.63780 -33.91891 -33.61747 -32.51442 -31.21017 -29.67837 -28.16113 -26.61446 -26.42026 -25.75383 -24.36731 -23.84860 -22.67735 -21.98054 -21.09045 -19.84398 -19.16676 -18.59334 -18.13927 -17.41889 -16.99495 -16.81977 -16.75062 -16.22949 -16.03750 -15.75511 -15.61989 -15.45262 -15.14998 -14.58313 -14.33122 -14.11607 -13.91490 -13.77472 -13.69801 -13.61318 -13.44711 -13.19243 -13.16154 -12.89853 -12.81423 -12.63966 -12.41840 -12.34798 -12.03291 -11.94556 -11.79445 -11.65583 -11.54912 -11.46204 -11.35829 -11.17681 -10.93969 -10.64121 -10.34273 -10.00012 -9.65153 -8.74060 -7.85004 -5.19011 -0.73955 -0.09311 1.41506 1.41828 1.50469 1.51675 1.78441 2.48229 2.56429 2.80679 2.99777 3.28277 3.33164 3.51087 3.65948 3.82287 3.89562 3.97470 4.03916 4.10796 4.16956 4.28337 4.30070 4.36870 4.43320 4.45152 4.56243 4.63731 4.77884 4.78652 4.81331 4.85197 4.87312 4.92011 4.95190 5.09175 5.13111 5.17416 5.23492 5.30130 5.34871 5.46256 5.49565 5.55591 5.60405 5.67135 5.72433 5.84155 5.99036 6.25507 6.28427 6.55259 6.90844 7.14737 7.83124 8.50251 9.25644 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.002884 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.832745 B = 9705.613023 C =10431.909404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.107 3.893 3 C 0.055 3.945 4 N -0.407 5.407 5 C 0.003 3.997 6 C 0.566 3.434 7 O -0.571 6.571 8 N -0.586 5.586 9 C 0.095 3.905 10 C -0.130 4.130 11 C -0.095 4.095 12 C -0.091 4.091 13 H 0.029 0.971 14 C 0.158 3.842 15 H 0.022 0.978 16 C -0.116 4.116 17 C -0.137 4.137 18 C 0.180 3.820 19 N -0.606 5.606 20 C -0.227 4.227 21 H 0.063 0.937 22 C -0.056 4.056 23 N -0.942 5.942 24 Si 0.962 3.038 25 H -0.289 1.289 26 H -0.276 1.276 27 H -0.292 1.292 28 C 0.123 3.877 29 C 0.108 3.892 30 N -0.461 5.461 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.223 0.777 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.000 1.000 46 H 0.028 0.972 47 H 0.246 0.754 48 H 0.095 0.905 49 H 0.073 0.927 50 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.106 0.202 -14.189 26.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.036 4.036 3 C -0.109 4.109 4 N -0.124 5.124 5 C -0.134 4.134 6 C 0.353 3.647 7 O -0.450 6.450 8 N -0.315 5.315 9 C -0.026 4.026 10 C -0.168 4.168 11 C -0.133 4.133 12 C -0.113 4.113 13 H 0.048 0.952 14 C 0.051 3.949 15 H 0.040 0.960 16 C -0.154 4.154 17 C -0.175 4.175 18 C 0.055 3.945 19 N -0.330 5.330 20 C -0.356 4.356 21 H 0.081 0.919 22 C -0.250 4.250 23 N -0.591 5.591 24 Si 0.792 3.208 25 H -0.216 1.216 26 H -0.201 1.201 27 H -0.218 1.218 28 C 0.001 3.999 29 C -0.050 4.050 30 N -0.177 5.177 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.239 0.761 35 H 0.105 0.895 36 H 0.153 0.847 37 H 0.108 0.892 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.018 0.982 46 H 0.047 0.953 47 H 0.055 0.945 48 H 0.113 0.887 49 H 0.092 0.908 50 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -21.629 -0.327 -14.116 25.830 hybrid contribution 0.764 -0.683 1.678 1.966 sum -20.866 -1.010 -12.438 24.313 Atomic orbital electron populations 1.20954 0.84181 1.05723 1.05191 1.23430 1.00720 0.89102 0.90348 1.24613 0.89495 1.01292 0.95498 1.68420 1.10024 1.26754 1.07240 1.21780 0.94521 0.92046 1.05062 1.18069 0.86149 0.83027 0.77436 1.90761 1.69357 1.33063 1.51854 1.48103 1.07851 1.13151 1.62407 1.22765 0.98933 0.86310 0.94599 1.21948 0.95890 1.01523 0.97482 1.21339 0.94476 0.96416 1.01027 1.21712 0.96728 0.97282 0.95568 0.95232 1.21095 0.90696 0.96006 0.87117 0.95994 1.22671 0.98461 0.97018 0.97222 1.22923 0.97926 1.00570 0.96082 1.21235 0.95438 0.85903 0.91923 1.44655 1.64360 1.18251 1.05736 1.19114 1.39920 0.92072 0.84530 0.91917 1.25497 1.02768 0.96543 1.00146 1.70121 1.53926 1.09069 1.25937 0.85321 0.77003 0.78000 0.80515 1.21604 1.20127 1.21818 1.21719 0.78288 1.02506 0.97428 1.23729 0.90498 0.98948 0.91847 1.68552 1.07632 1.30599 1.10913 0.87831 0.90225 0.86725 0.76094 0.89480 0.84694 0.89201 0.94466 0.94473 0.90828 0.89279 0.89869 0.92184 0.89777 0.98151 0.95308 0.94474 0.88740 0.90805 0.80658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 10.19 71.24 0.73 0.26 16 2 C 0.11 1.40 6.79 42.64 0.29 1.69 16 3 C 0.05 0.65 10.88 84.83 0.92 1.57 16 4 N -0.41 -7.86 6.51 -184.33 -1.20 -9.06 16 5 C 0.00 0.08 6.47 41.88 0.27 0.35 16 6 C 0.57 17.58 7.64 86.88 0.66 18.24 16 7 O -0.57 -21.13 15.87 -3.78 -0.06 -21.19 16 8 N -0.59 -17.15 2.97 -821.97 -2.44 -19.60 16 9 C 0.10 2.30 5.85 86.36 0.51 2.81 16 10 C -0.13 -3.76 6.08 30.67 0.19 -3.58 16 11 C -0.10 -3.35 4.74 30.62 0.15 -3.21 16 12 C -0.09 -3.42 2.11 -10.72 -0.02 -3.44 16 13 H 0.03 1.32 8.02 -2.39 -0.02 1.31 16 14 C 0.16 6.38 2.94 45.34 0.13 6.52 16 15 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 16 C -0.12 -3.68 5.12 31.78 0.16 -3.51 16 17 C -0.14 -4.86 7.10 32.07 0.23 -4.64 16 18 C 0.18 8.71 5.42 86.94 0.47 9.18 16 19 N -0.61 -30.61 2.32 -667.83 -1.55 -32.16 16 20 C -0.23 -12.88 9.82 84.03 0.83 -12.05 16 21 H 0.06 3.59 7.83 -2.91 -0.02 3.56 16 22 C -0.06 -3.21 5.47 84.86 0.46 -2.75 16 23 N -0.94 -56.48 10.57 21.65 0.23 -56.25 16 24 Si 0.96 47.11 29.55 68.60 2.03 49.13 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 27 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 28 C 0.12 3.83 5.59 86.36 0.48 4.31 16 29 C 0.11 2.52 10.77 84.93 0.91 3.43 16 30 N -0.46 -9.23 10.41 -182.22 -1.90 -11.13 16 31 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.11 -0.12 8.08 -2.39 -0.02 -0.14 16 34 H 0.22 0.51 8.06 -2.91 -0.02 0.49 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.14 2.97 4.21 -39.86 -0.17 2.80 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 1.69 7.55 -2.39 -0.02 1.67 16 40 H 0.07 2.29 6.09 -2.39 -0.01 2.28 16 41 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.08 2.39 5.54 -2.39 -0.01 2.38 16 43 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.00 0.03 8.06 -2.39 -0.02 0.01 16 46 H 0.03 1.59 6.92 -2.39 -0.02 1.58 16 47 H 0.25 14.42 8.31 -92.70 -0.77 13.64 16 48 H 0.09 2.47 6.98 -2.39 -0.02 2.46 16 49 H 0.07 2.53 7.00 -2.38 -0.02 2.51 16 50 H 0.18 4.09 7.72 -2.91 -0.02 4.06 16 Total: -1.00 -75.25 386.16 3.26 -71.99 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.79 Total: 13.07 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 7.37 Total: 15.19 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -6.86 Total: -128.20 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.06 Total: -21.19 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -75.25 3.26 -71.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963248552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.402 kcal (2) G-P(sol) polarization free energy of solvation -75.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds