Wall clock time and date at job start Wed Apr 1 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32166 * 120.53818 * 2 1 4 4 C 1.31856 * 120.96606 * 180.32946 * 3 2 1 5 5 N 1.31882 * 122.09612 * 359.65951 * 4 3 2 6 6 C 1.32138 * 120.96847 * 0.02562 * 5 4 3 7 7 C 1.39923 * 120.53678 * 179.70490 * 2 1 3 8 8 C 1.47834 * 120.94221 * 359.97438 * 7 2 1 9 9 O 1.21556 * 119.99694 * 305.82796 * 8 7 2 10 10 N 1.34769 * 120.00395 * 125.82245 * 8 7 2 11 11 C 1.46929 * 120.63321 * 4.20980 * 10 8 7 12 12 C 1.53185 * 108.77993 * 233.63087 * 11 10 8 13 13 C 1.53042 * 109.31070 * 305.36314 * 12 11 10 14 14 C 1.53034 * 109.53992 * 61.36364 * 13 12 11 15 15 H 1.09004 * 109.50099 * 58.61935 * 14 13 12 16 16 C 1.53002 * 109.49904 * 178.68661 * 14 13 12 17 17 H 1.09005 * 109.87126 * 295.66835 * 16 14 13 18 18 C 1.54315 * 109.88439 * 56.68477 * 16 14 13 19 19 C 1.55159 * 102.94349 * 141.61272 * 18 16 14 20 20 C 1.54911 * 101.57799 * 324.49885 * 19 18 16 21 21 N 1.47022 * 109.88090 * 174.65647 * 16 14 13 22 22 C 1.36937 * 125.65002 * 61.60847 * 21 16 14 23 23 H 1.07998 * 120.00208 * 10.29354 * 22 21 16 24 24 C 1.38810 * 119.99916 * 190.29023 * 22 21 16 25 25 N 1.31623 * 120.00197 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00224 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46779 * 90.00228 * 26 24 22 28 28 H 1.48496 * 109.47366 * 209.99990 * 26 24 22 29 29 H 1.48498 * 109.47049 * 330.00475 * 26 24 22 30 30 C 1.46931 * 120.63372 * 184.23083 * 10 8 7 31 31 H 1.08997 * 109.47351 * 274.71973 * 1 2 3 32 32 H 1.09006 * 109.46424 * 34.71365 * 1 2 3 33 33 H 1.09001 * 109.47244 * 154.70954 * 1 2 3 34 34 H 1.07998 * 118.95071 * 179.67391 * 4 3 2 35 35 H 1.07991 * 120.54331 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.58737 * 113.83881 * 11 10 8 37 37 H 1.09010 * 109.58440 * 353.41744 * 11 10 8 38 38 H 1.09007 * 109.49948 * 65.31091 * 12 11 10 39 39 H 1.09003 * 109.50255 * 185.37917 * 12 11 10 40 40 H 1.09007 * 109.46208 * 181.38866 * 13 12 11 41 41 H 1.09001 * 109.45821 * 301.34453 * 13 12 11 42 42 H 1.08996 * 110.72261 * 259.97419 * 18 16 14 43 43 H 1.09001 * 110.72272 * 23.24974 * 18 16 14 44 44 H 1.08994 * 111.00682 * 82.57223 * 19 18 16 45 45 H 1.09004 * 111.00642 * 206.39118 * 19 18 16 46 46 H 1.09002 * 110.36551 * 155.85099 * 20 19 18 47 47 H 1.09002 * 110.36562 * 278.05761 * 20 19 18 48 48 H 0.96995 * 120.00429 * 179.97438 * 25 24 22 49 49 H 1.08992 * 109.58329 * 6.58028 * 30 10 8 50 50 H 1.09004 * 109.70300 * 246.22708 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 -0.0065 5 7 4.2061 0.0362 -0.0066 6 6 3.6164 -1.1463 -0.0007 7 6 2.2179 -1.2051 0.0062 8 6 1.5120 -2.5041 0.0135 9 8 0.6808 -2.7392 0.8686 10 7 1.7901 -3.4274 -0.9280 11 6 2.8560 -3.1956 -1.9123 12 6 2.2780 -3.3826 -3.3185 13 6 1.6212 -4.7615 -3.4164 14 6 0.4751 -4.8554 -2.4067 15 1 -0.2530 -4.0696 -2.6085 16 6 -0.2018 -6.2221 -2.5280 17 1 -0.6650 -6.3204 -3.5098 18 6 0.8389 -7.3432 -2.3241 19 6 0.0513 -8.4052 -1.5123 20 6 -0.8437 -7.5117 -0.6176 21 7 -1.2198 -6.3709 -1.4777 22 6 -2.3286 -5.5823 -1.3236 23 1 -2.6032 -4.8795 -2.0963 24 6 -3.0998 -5.6862 -0.1741 25 7 -2.7656 -6.5430 0.7675 26 14 -4.6120 -4.6099 0.0366 27 1 -5.7977 -5.3073 -0.5230 28 1 -4.8314 -4.3416 1.4805 29 1 -4.4092 -3.3254 -0.6804 30 6 1.0327 -4.6850 -0.9900 31 1 -0.3634 0.0846 1.0241 32 1 -0.3632 0.8448 -0.5853 33 1 -0.3634 -0.9292 -0.4390 34 1 4.0127 2.0971 -0.0117 35 1 4.2038 -2.0525 -0.0004 36 1 3.6637 -3.9096 -1.7512 37 1 3.2370 -2.1798 -1.8059 38 1 1.5333 -2.6104 -3.5115 39 1 3.0789 -3.3076 -4.0541 40 1 1.2306 -4.9070 -4.4237 41 1 2.3607 -5.5322 -3.1991 42 1 1.1597 -7.7506 -3.2828 43 1 1.6931 -6.9775 -1.7541 44 1 -0.5534 -9.0300 -2.1696 45 1 0.7245 -9.0138 -0.9085 46 1 -1.7332 -8.0585 -0.3045 47 1 -0.2856 -7.1666 0.2528 48 1 -3.3043 -6.6154 1.5709 49 1 0.2106 -4.6519 -0.2752 50 1 1.6897 -5.5218 -0.7529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963267097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:27 Heat of formation + Delta-G solvation = 41.598676 kcal Electronic energy + Delta-G solvation = -32084.017997 eV Core-core repulsion = 28112.005212 eV Total energy + Delta-G solvation = -3972.012785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.53495 -39.85279 -38.21517 -36.48775 -34.62934 -33.42833 -32.61050 -32.17005 -31.04353 -29.27408 -28.88120 -26.81010 -26.04158 -24.60802 -24.30080 -23.26259 -22.60634 -21.29469 -20.24426 -19.52782 -18.42145 -18.09860 -17.24603 -17.04233 -16.60606 -16.06341 -15.39755 -14.97224 -14.68364 -14.55739 -14.29028 -14.11482 -13.92258 -13.81843 -13.32031 -13.26834 -13.12007 -13.06851 -12.74755 -12.32651 -12.19581 -11.96690 -11.79649 -11.69483 -11.50899 -11.31331 -11.05800 -10.90918 -10.81044 -10.74821 -10.60200 -10.21028 -10.05193 -9.92365 -9.83951 -9.78696 -9.60221 -9.55421 -9.53452 -9.45424 -8.54170 -8.38184 -6.76267 -5.66868 -3.02467 0.39827 0.76837 2.68351 3.05387 3.43846 3.49248 3.49454 3.51569 3.79006 3.85432 4.14398 4.35460 4.53368 4.72894 4.76975 4.93434 5.00684 5.07341 5.27542 5.29986 5.33961 5.44843 5.53978 5.55733 5.59652 5.63599 5.64231 5.73009 5.82516 5.88084 5.89728 5.93100 6.03788 6.13289 6.15866 6.18097 6.31937 6.35677 6.49058 6.58668 6.63382 6.69442 6.80011 6.82799 6.94895 7.06589 7.53526 7.59863 7.64801 7.76999 7.86681 8.25727 8.34038 9.25432 9.87327 10.53951 11.43645 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.004296 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.282786 B = 6516.375988 C = 8167.528126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.224 3.776 3 N -0.521 5.521 4 C 0.306 3.694 5 N -0.527 5.527 6 C 0.178 3.822 7 C -0.226 4.226 8 C 0.562 3.438 9 O -0.508 6.508 10 N -0.601 5.601 11 C 0.101 3.899 12 C -0.132 4.132 13 C -0.115 4.115 14 C -0.106 4.106 15 H 0.069 0.931 16 C 0.168 3.832 17 H 0.035 0.965 18 C -0.127 4.127 19 C -0.150 4.150 20 C 0.169 3.831 21 N -0.594 5.594 22 C -0.226 4.226 23 H 0.073 0.927 24 C 0.000 4.000 25 N -0.915 5.915 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.127 3.873 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.200 0.800 35 H 0.173 0.827 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.021 0.979 48 H 0.252 0.748 49 H 0.116 0.884 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.852 8.082 -6.679 18.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.078 3.922 3 N -0.236 5.236 4 C 0.019 3.981 5 N -0.241 5.241 6 C 0.012 3.988 7 C -0.234 4.234 8 C 0.346 3.654 9 O -0.382 6.382 10 N -0.334 5.334 11 C -0.023 4.023 12 C -0.171 4.171 13 C -0.154 4.154 14 C -0.128 4.128 15 H 0.087 0.913 16 C 0.060 3.940 17 H 0.053 0.947 18 C -0.165 4.165 19 C -0.189 4.189 20 C 0.044 3.956 21 N -0.318 5.318 22 C -0.354 4.354 23 H 0.090 0.910 24 C -0.197 4.197 25 N -0.562 5.562 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.208 1.208 30 C 0.007 3.993 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.216 0.784 35 H 0.190 0.810 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.039 0.961 48 H 0.062 0.938 49 H 0.135 0.865 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.664 8.851 -6.022 18.156 hybrid contribution -0.988 -0.075 0.104 0.996 sum 13.676 8.776 -5.919 17.294 Atomic orbital electron populations 1.20909 0.86783 1.04493 1.04715 1.21880 0.97937 0.86507 0.85844 1.68359 1.10271 1.29649 1.15314 1.25133 0.86775 0.97189 0.88993 1.68446 1.41370 0.98901 1.15358 1.23451 0.90609 0.96674 0.88057 1.21767 0.96608 0.96628 1.08396 1.17800 0.82618 0.82692 0.82266 1.90912 1.32821 1.78460 1.36025 1.48170 1.35861 1.19323 1.30026 1.21903 0.90035 1.01329 0.89007 1.21900 1.00513 0.99047 0.95620 1.21627 0.98136 0.95771 0.99822 1.21977 0.96164 1.01190 0.93423 0.91264 1.20889 0.89002 0.90754 0.93367 0.94741 1.22653 0.97833 0.96769 0.99266 1.23024 0.98917 0.97581 0.99370 1.21570 0.96601 0.87042 0.90398 1.44588 1.22573 1.33761 1.30846 1.18882 1.00237 1.15150 1.01126 0.90962 1.24762 0.99530 0.99309 0.96070 1.69900 1.39858 1.37739 1.08731 0.86215 0.82889 0.80131 0.77095 1.21788 1.21662 1.20763 1.21805 0.96286 0.81978 0.99278 0.88585 0.89697 0.89413 0.78381 0.81036 0.90997 0.90733 0.91767 0.91146 0.91939 0.91779 0.92538 0.91801 0.92461 0.92609 0.90325 0.96109 0.93770 0.86540 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.55 36.00 0.34 -1.16 16 2 C 0.22 3.08 6.86 -81.82 -0.56 2.52 16 3 N -0.52 -6.56 10.36 -10.48 -0.11 -6.67 16 4 C 0.31 3.23 12.27 -92.03 -1.13 2.11 16 5 N -0.53 -5.93 10.42 -14.24 -0.15 -6.08 16 6 C 0.18 2.04 8.74 -16.77 -0.15 1.90 16 7 C -0.23 -3.12 4.91 -104.69 -0.51 -3.64 16 8 C 0.56 9.38 6.22 -12.34 -0.08 9.30 16 9 O -0.51 -10.84 15.53 5.32 0.08 -10.76 16 10 N -0.60 -9.06 2.97 -173.88 -0.52 -9.57 16 11 C 0.10 1.10 5.58 -3.71 -0.02 1.08 16 12 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 13 C -0.12 -1.44 4.85 -26.69 -0.13 -1.57 16 14 C -0.11 -1.78 2.10 -90.50 -0.19 -1.97 16 15 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 16 C 0.17 3.18 2.98 -66.96 -0.20 2.98 16 17 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 18 C -0.13 -2.04 5.16 -24.90 -0.13 -2.17 16 19 C -0.15 -2.71 7.09 -24.58 -0.17 -2.89 16 20 C 0.17 3.93 5.52 -2.35 -0.01 3.92 16 21 N -0.59 -14.15 2.30 -162.32 -0.37 -14.52 16 22 C -0.23 -6.05 9.92 -15.06 -0.15 -6.20 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C 0.00 0.00 5.48 -17.43 -0.10 -0.09 16 25 N -0.92 -26.61 10.43 55.49 0.58 -26.03 16 26 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 30 C 0.13 2.27 5.25 -3.71 -0.02 2.25 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.35 6.74 -51.93 -0.35 1.00 16 34 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.17 1.56 7.41 -52.49 -0.39 1.17 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.74 4.71 -51.92 -0.24 0.50 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.74 6.89 -51.93 -0.36 0.38 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.97 5.45 -51.93 -0.28 0.68 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.08 2.09 6.62 -51.93 -0.34 1.74 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.12 2.74 6.59 -51.93 -0.34 2.40 16 50 H 0.06 1.07 6.13 -51.93 -0.32 0.75 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -31.91 383.86 -10.76 -42.67 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.67 Total: 3.00 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -3.37 Total: 4.79 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.57 Total: -62.87 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.91 -10.76 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963267097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.269 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds