Wall clock time and date at job start Wed Apr 1 2020 03:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32159 * 120.53685 * 2 1 4 4 C 1.31858 * 120.96352 * 180.32709 * 3 2 1 5 5 N 1.31879 * 122.09948 * 359.66187 * 4 3 2 6 6 C 1.32138 * 120.96351 * 0.02562 * 5 4 3 7 7 C 1.39923 * 120.53537 * 179.70834 * 2 1 3 8 8 C 1.47833 * 120.94030 * 359.97438 * 7 2 1 9 9 O 1.21554 * 120.00025 * 53.44927 * 8 7 2 10 10 N 1.34781 * 119.99914 * 233.45001 * 8 7 2 11 11 C 1.46927 * 120.62823 * 4.91510 * 10 8 7 12 12 C 1.53188 * 108.77179 * 126.42014 * 11 10 8 13 13 C 1.53034 * 109.32083 * 54.63190 * 12 11 10 14 14 C 1.53044 * 109.53741 * 298.63911 * 13 12 11 15 15 H 1.09006 * 109.52174 * 301.39748 * 14 13 12 16 16 C 1.52997 * 109.49959 * 181.31569 * 14 13 12 17 17 H 1.08996 * 109.87580 * 179.01936 * 16 14 13 18 18 C 1.54323 * 110.00793 * 300.11355 * 16 14 13 19 19 C 1.55154 * 102.94376 * 141.68121 * 18 16 14 20 20 C 1.55126 * 101.48561 * 324.33467 * 19 18 16 21 21 N 1.47024 * 109.88441 * 57.99550 * 16 14 13 22 22 C 1.36935 * 125.64204 * 61.45354 * 21 16 14 23 23 H 1.07997 * 120.00502 * 356.57191 * 22 21 16 24 24 C 1.38817 * 119.99886 * 176.56998 * 22 21 16 25 25 N 1.31618 * 119.99566 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00350 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47406 * 180.02562 * 26 24 22 28 28 H 1.48507 * 109.46730 * 299.99905 * 26 24 22 29 29 H 1.48504 * 109.47173 * 59.99574 * 26 24 22 30 30 C 1.46923 * 120.63125 * 184.94312 * 10 8 7 31 31 H 1.09000 * 109.47255 * 275.04610 * 1 2 3 32 32 H 1.09001 * 109.47292 * 35.04252 * 1 2 3 33 33 H 1.08995 * 109.47477 * 155.04140 * 1 2 3 34 34 H 1.08008 * 118.94748 * 179.67813 * 4 3 2 35 35 H 1.08002 * 120.53443 * 180.02562 * 6 5 4 36 36 H 1.09007 * 109.58103 * 246.19934 * 11 10 8 37 37 H 1.08997 * 109.58620 * 6.62377 * 11 10 8 38 38 H 1.09000 * 109.49676 * 174.58726 * 12 11 10 39 39 H 1.09005 * 109.49375 * 294.63984 * 12 11 10 40 40 H 1.08994 * 109.46676 * 178.61580 * 13 12 11 41 41 H 1.09003 * 109.45852 * 58.65122 * 13 12 11 42 42 H 1.09004 * 110.72070 * 260.04427 * 18 16 14 43 43 H 1.09004 * 110.71962 * 23.31998 * 18 16 14 44 44 H 1.09005 * 111.00202 * 82.57245 * 19 18 16 45 45 H 1.08995 * 111.00659 * 206.38487 * 19 18 16 46 46 H 1.08999 * 110.49680 * 278.44921 * 20 19 18 47 47 H 1.09006 * 110.34526 * 156.05350 * 20 19 18 48 48 H 0.97003 * 119.99761 * 180.02562 * 25 24 22 49 49 H 1.08995 * 109.59214 * 113.79544 * 30 10 8 50 50 H 1.09005 * 109.58339 * 353.36692 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1481 -0.0065 5 7 4.2061 0.0362 -0.0066 6 6 3.6164 -1.1463 -0.0007 7 6 2.2179 -1.2052 0.0061 8 6 1.5120 -2.5040 0.0133 9 8 0.6706 -2.7431 -0.8308 10 7 1.8013 -3.4231 0.9558 11 6 2.7362 -3.1095 2.0450 12 6 2.0522 -3.4078 3.3829 13 6 1.5489 -4.8530 3.3831 14 6 0.5216 -5.0373 2.2638 15 1 -0.3063 -4.3438 2.4114 16 6 -0.0052 -6.4736 2.2856 17 1 -0.7505 -6.6068 1.5014 18 6 1.1582 -7.4660 2.0779 19 6 0.7949 -8.6324 3.0344 20 6 0.1533 -7.8691 4.2227 21 7 -0.6011 -6.7678 3.5971 22 6 -1.6752 -6.1218 4.1485 23 1 -2.1238 -5.2844 3.6348 24 6 -2.1875 -6.5433 5.3679 25 7 -1.6411 -7.5642 5.9937 26 14 -3.6531 -5.6627 6.1199 27 1 -4.0035 -6.3009 7.4141 28 1 -3.3092 -4.2363 6.3491 29 1 -4.8114 -5.7502 5.1946 30 6 1.1882 -4.7576 0.9132 31 1 -0.3634 0.0904 1.0237 32 1 -0.3634 0.8414 -0.5901 33 1 -0.3634 -0.9316 -0.4336 34 1 4.0127 2.0971 -0.0115 35 1 4.2039 -2.0525 -0.0004 36 1 3.6309 -3.7245 1.9469 37 1 3.0084 -2.0550 2.0007 38 1 2.7664 -3.2712 4.1950 39 1 1.2107 -2.7288 3.5205 40 1 1.0835 -5.0754 4.3433 41 1 2.3879 -5.5297 3.2209 42 1 1.1912 -7.8108 1.0444 43 1 2.1072 -7.0132 2.3651 44 1 0.0794 -9.3106 2.5693 45 1 1.6884 -9.1691 3.3531 46 1 0.9247 -7.4732 4.8832 47 1 -0.5203 -8.5246 4.7747 48 1 -1.9992 -7.8590 6.8456 49 1 1.9566 -5.5068 0.7228 50 1 0.4390 -4.7904 0.1221 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963267098.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:30 Heat of formation + Delta-G solvation = 40.678045 kcal Electronic energy + Delta-G solvation = -31475.715873 eV Core-core repulsion = 27503.663166 eV Total energy + Delta-G solvation = -3972.052707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.67515 -40.01887 -38.38958 -36.56276 -34.74574 -33.49870 -32.66138 -32.22757 -31.25525 -29.40390 -28.97595 -26.76688 -26.15503 -24.60686 -24.50213 -23.32353 -22.59727 -21.51023 -20.35179 -19.53811 -18.47812 -18.22057 -17.41614 -17.14592 -16.68541 -16.24545 -15.33383 -15.24620 -14.85255 -14.58233 -14.32208 -14.28556 -14.07381 -13.89077 -13.48553 -13.40306 -13.25582 -13.07261 -12.88572 -12.40684 -12.20029 -12.13788 -11.95193 -11.89304 -11.58270 -11.21791 -11.00603 -10.91597 -10.85681 -10.77456 -10.48783 -10.35697 -10.16388 -10.06765 -9.94851 -9.79895 -9.68026 -9.63970 -9.53367 -9.42094 -8.69896 -8.60084 -6.84731 -5.64072 -3.08508 0.24511 0.65295 2.39726 2.81476 3.35711 3.38380 3.43702 3.44058 3.66960 3.74259 4.00935 4.16497 4.46709 4.60031 4.74335 4.91056 5.01605 5.10986 5.15172 5.17797 5.32678 5.33542 5.38295 5.50166 5.54870 5.63384 5.66427 5.71691 5.74411 5.75634 5.87031 5.89501 5.98289 6.02562 6.08235 6.22412 6.30684 6.37002 6.50002 6.52529 6.58196 6.63323 6.74755 6.89685 6.94276 7.08506 7.24831 7.51181 7.64501 7.65151 7.87499 7.93804 8.39653 9.22197 9.83307 10.47736 11.36284 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.003147 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.027252 B = 8894.426887 C = 9803.528749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.226 3.774 3 N -0.521 5.521 4 C 0.310 3.690 5 N -0.525 5.525 6 C 0.183 3.817 7 C -0.232 4.232 8 C 0.569 3.431 9 O -0.529 6.529 10 N -0.595 5.595 11 C 0.105 3.895 12 C -0.134 4.134 13 C -0.105 4.105 14 C -0.106 4.106 15 H 0.070 0.930 16 C 0.168 3.832 17 H 0.035 0.965 18 C -0.131 4.131 19 C -0.146 4.146 20 C 0.145 3.855 21 N -0.590 5.590 22 C -0.217 4.217 23 H 0.074 0.926 24 C -0.010 4.010 25 N -0.921 5.921 26 Si 0.910 3.090 27 H -0.291 1.291 28 H -0.287 1.287 29 H -0.285 1.285 30 C 0.115 3.885 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.201 0.799 35 H 0.173 0.827 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.008 0.992 47 H 0.112 0.888 48 H 0.251 0.749 49 H 0.070 0.930 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.245 10.674 -9.824 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 N -0.236 5.236 4 C 0.023 3.977 5 N -0.239 5.239 6 C 0.017 3.983 7 C -0.239 4.239 8 C 0.355 3.645 9 O -0.406 6.406 10 N -0.327 5.327 11 C -0.018 4.018 12 C -0.172 4.172 13 C -0.143 4.143 14 C -0.127 4.127 15 H 0.089 0.911 16 C 0.060 3.940 17 H 0.052 0.948 18 C -0.169 4.169 19 C -0.185 4.185 20 C 0.021 3.979 21 N -0.313 5.313 22 C -0.345 4.345 23 H 0.092 0.908 24 C -0.205 4.205 25 N -0.570 5.570 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.214 1.214 29 H -0.212 1.212 30 C -0.007 4.007 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.217 0.783 35 H 0.190 0.810 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.025 0.975 47 H 0.130 0.870 48 H 0.062 0.938 49 H 0.089 0.911 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.110 11.386 -10.053 19.425 hybrid contribution -0.918 -0.112 0.542 1.071 sum 11.192 11.274 -9.511 18.516 Atomic orbital electron populations 1.21091 0.87003 1.05910 1.04286 1.21869 0.97938 0.86521 0.85720 1.68380 1.10304 1.29627 1.15281 1.25181 0.86746 0.97259 0.88526 1.68467 1.41343 0.98899 1.15212 1.23449 0.90477 0.96749 0.87639 1.21632 0.96663 0.96359 1.09265 1.17811 0.82191 0.82771 0.81721 1.90779 1.32716 1.78629 1.38461 1.48127 1.44911 1.14149 1.25504 1.21899 0.92115 1.00590 0.87199 1.21937 1.00535 0.99413 0.95307 1.21489 0.98052 0.93527 1.01187 1.21993 0.97801 1.00621 0.92330 0.91131 1.20840 0.92716 0.90452 0.90032 0.94759 1.22705 0.98356 0.97149 0.98667 1.23012 0.99498 0.97007 0.98967 1.22128 0.94371 0.90127 0.91316 1.44499 1.32821 1.39070 1.14943 1.18968 1.04173 1.09704 1.01687 0.90770 1.24744 0.99528 0.98541 0.97709 1.69716 1.42409 1.27881 1.16945 0.86215 0.82572 0.78674 0.78423 1.21638 1.21378 1.21194 1.21904 0.97865 0.80968 0.99926 0.89224 0.89395 0.87979 0.78273 0.81018 0.90904 0.90933 0.91046 0.91732 0.89469 0.92452 0.92599 0.91643 0.92412 0.92785 0.97451 0.87007 0.93763 0.91133 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.94 36.01 0.36 -1.00 16 2 C 0.23 2.66 6.86 -81.82 -0.56 2.09 16 3 N -0.52 -5.80 10.36 -10.48 -0.11 -5.91 16 4 C 0.31 2.91 12.27 -92.03 -1.13 1.78 16 5 N -0.53 -5.30 10.42 -14.24 -0.15 -5.45 16 6 C 0.18 1.82 9.06 -16.77 -0.15 1.67 16 7 C -0.23 -2.70 4.65 -104.69 -0.49 -3.19 16 8 C 0.57 7.69 6.65 -12.33 -0.08 7.60 16 9 O -0.53 -8.69 14.58 5.32 0.08 -8.62 16 10 N -0.60 -7.50 2.97 -173.89 -0.52 -8.02 16 11 C 0.10 1.11 5.61 -3.71 -0.02 1.08 16 12 C -0.13 -1.69 6.08 -26.62 -0.16 -1.85 16 13 C -0.11 -1.64 4.74 -26.69 -0.13 -1.77 16 14 C -0.11 -1.75 2.10 -90.50 -0.19 -1.94 16 15 H 0.07 1.35 7.98 -51.93 -0.41 0.94 16 16 C 0.17 3.18 2.95 -66.95 -0.20 2.98 16 17 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 18 C -0.13 -2.10 5.11 -24.90 -0.13 -2.23 16 19 C -0.15 -2.65 7.10 -24.47 -0.17 -2.82 16 20 C 0.15 3.32 6.05 -2.41 -0.01 3.31 16 21 N -0.59 -13.83 2.28 -162.44 -0.37 -14.20 16 22 C -0.22 -5.69 9.88 -15.06 -0.15 -5.84 16 23 H 0.07 1.92 7.77 -52.49 -0.41 1.51 16 24 C -0.01 -0.27 5.48 -17.43 -0.10 -0.36 16 25 N -0.92 -25.86 10.04 55.49 0.56 -25.30 16 26 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 C 0.12 1.60 5.57 -3.71 -0.02 1.58 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.27 5.68 -51.93 -0.30 0.98 16 34 H 0.20 1.14 8.06 -52.48 -0.42 0.71 16 35 H 0.17 1.31 7.77 -52.49 -0.41 0.90 16 36 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 37 H 0.07 0.70 5.33 -51.93 -0.28 0.43 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.72 7.53 -51.93 -0.39 1.33 16 41 H 0.06 0.84 6.13 -51.93 -0.32 0.52 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.97 5.54 -51.93 -0.29 0.68 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.11 2.95 5.64 -51.93 -0.29 2.66 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.07 0.88 6.92 -51.93 -0.36 0.53 16 50 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -30.38 382.70 -10.70 -41.08 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.60 Total: 2.95 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -3.33 Total: 1.09 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.59 Total: -58.88 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.38 -10.70 -41.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963267098.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.755 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds