Wall clock time and date at job start Wed Apr 1 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32167 * 120.53631 * 2 1 4 4 C 1.31854 * 120.96609 * 180.29239 * 3 2 1 5 5 N 1.31883 * 122.09556 * 359.72173 * 4 3 2 6 6 C 1.32127 * 120.96950 * 0.02562 * 5 4 3 7 7 C 1.39922 * 120.54039 * 179.76118 * 2 1 3 8 8 C 1.47834 * 120.94157 * 359.97438 * 7 2 1 9 9 O 1.21550 * 119.99616 * 53.84047 * 8 7 2 10 10 N 1.34772 * 120.00273 * 233.57140 * 8 7 2 11 11 C 1.46931 * 120.63082 * 355.99465 * 10 8 7 12 12 C 1.53620 * 108.54330 * 126.36567 * 11 10 8 13 13 C 1.53044 * 109.24127 * 54.85968 * 12 11 10 14 14 C 1.53043 * 109.53438 * 298.50688 * 13 12 11 15 15 H 1.08989 * 109.50107 * 301.41102 * 14 13 12 16 16 C 1.53002 * 109.49226 * 181.31439 * 14 13 12 17 17 H 1.08999 * 109.87494 * 60.04815 * 16 14 13 18 18 C 1.54323 * 109.88705 * 298.86749 * 16 14 13 19 19 C 1.55151 * 102.94429 * 218.39189 * 18 16 14 20 20 C 1.54914 * 101.58330 * 35.50080 * 19 18 16 21 21 N 1.47026 * 109.87914 * 181.06089 * 16 14 13 22 22 C 1.36936 * 125.64542 * 298.39424 * 21 16 14 23 23 H 1.07995 * 120.00407 * 349.12040 * 22 21 16 24 24 C 1.38817 * 119.99849 * 169.12161 * 22 21 16 25 25 N 1.31618 * 119.99821 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00146 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47107 * 359.97438 * 26 24 22 28 28 H 1.48509 * 109.47045 * 119.99699 * 26 24 22 29 29 H 1.48495 * 109.47156 * 239.99834 * 26 24 22 30 30 C 1.46922 * 120.63063 * 176.27120 * 10 8 7 31 31 H 1.08992 * 109.47102 * 274.35424 * 1 2 3 32 32 H 1.08999 * 109.47028 * 34.35586 * 1 2 3 33 33 H 1.08995 * 109.46567 * 154.34991 * 1 2 3 34 34 H 1.08006 * 118.95159 * 179.70389 * 4 3 2 35 35 H 1.07997 * 120.54427 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.58634 * 246.20254 * 11 10 8 37 37 H 1.08998 * 109.58506 * 6.62547 * 11 10 8 38 38 H 1.09000 * 109.63938 * 294.86922 * 12 11 10 39 39 H 1.09000 * 109.45308 * 174.73984 * 12 11 10 40 40 H 1.08996 * 109.46004 * 178.48702 * 13 12 11 41 41 H 1.08997 * 109.45001 * 58.52466 * 13 12 11 42 42 H 1.09000 * 110.71780 * 336.75788 * 18 16 14 43 43 H 1.09002 * 110.71629 * 100.03091 * 18 16 14 44 44 H 1.09002 * 111.00437 * 277.43078 * 19 18 16 45 45 H 1.09003 * 111.04101 * 153.59013 * 19 18 16 46 46 H 1.09001 * 110.36766 * 204.15300 * 20 19 18 47 47 H 1.09002 * 110.36564 * 81.82781 * 20 19 18 48 48 H 0.96997 * 120.00379 * 180.02562 * 25 24 22 49 49 H 1.08998 * 109.59086 * 353.37468 * 30 10 8 50 50 H 1.09004 * 109.58702 * 113.65765 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1384 0.0000 4 6 3.4971 1.1483 -0.0058 5 7 4.2062 0.0363 -0.0063 6 6 3.6165 -1.1461 -0.0016 7 6 2.2180 -1.2051 0.0050 8 6 1.5122 -2.5040 0.0110 9 8 0.6760 -2.7452 -0.8375 10 7 1.7998 -3.4229 0.9540 11 6 2.8727 -3.1844 1.9292 12 6 2.2986 -3.3691 3.3420 13 6 1.6508 -4.7517 3.4465 14 6 0.5006 -4.8551 2.4423 15 1 -0.2310 -4.0732 2.6453 16 6 -0.1672 -6.2258 2.5703 17 1 -0.5591 -6.3543 3.5793 18 6 0.8541 -7.3388 2.2546 19 6 0.0071 -8.3754 1.4703 20 6 -0.9505 -7.4552 0.6729 21 7 -1.2579 -6.3439 1.5915 22 6 -2.3741 -5.5522 1.5411 23 1 -2.5970 -4.8804 2.3567 24 6 -3.2192 -5.6132 0.4415 25 7 -2.9473 -6.4316 -0.5528 26 14 -4.7414 -4.5328 0.3723 27 1 -4.8197 -3.7083 1.6049 28 1 -4.6638 -3.6435 -0.8145 29 1 -5.9513 -5.3879 0.2718 30 6 1.0505 -4.6849 1.0227 31 1 -0.3633 0.0780 1.0246 32 1 -0.3633 0.8484 -0.5799 33 1 -0.3632 -0.9264 -0.4448 34 1 4.0128 2.0972 -0.0105 35 1 4.2039 -2.0523 -0.0025 36 1 3.6813 -3.8965 1.7643 37 1 3.2496 -2.1679 1.8164 38 1 1.5500 -2.6010 3.5366 39 1 3.1022 -3.2876 4.0739 40 1 1.2659 -4.8971 4.4558 41 1 2.3942 -5.5182 3.2275 42 1 1.6641 -6.9544 1.6348 43 1 1.2444 -7.7760 3.1737 44 1 -0.5481 -9.0213 2.1505 45 1 0.6324 -8.9641 0.7990 46 1 -1.8615 -7.9927 0.4095 47 1 -0.4573 -7.0805 -0.2241 48 1 -3.5376 -6.4741 -1.3213 49 1 0.2248 -4.6588 0.3117 50 1 1.7129 -5.5167 0.7830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963267099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:33 Heat of formation + Delta-G solvation = 23.111516 kcal Electronic energy + Delta-G solvation = -32056.027383 eV Core-core repulsion = 28083.212934 eV Total energy + Delta-G solvation = -3972.814449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.55218 -41.08699 -39.69746 -37.88751 -35.59636 -34.86866 -34.19598 -33.41239 -32.25535 -31.14388 -29.96924 -28.25469 -27.14294 -26.47759 -25.44196 -24.37721 -23.80487 -22.47563 -21.89473 -20.95256 -19.77640 -19.14128 -18.67080 -18.22957 -17.92065 -17.40410 -16.83908 -16.51870 -15.97871 -15.88445 -15.62596 -15.60324 -15.29974 -14.91350 -14.52212 -14.39043 -14.24971 -14.12385 -13.98615 -13.89312 -13.68995 -13.37696 -13.14249 -13.04763 -12.87762 -12.87159 -12.73039 -12.68420 -12.13403 -11.98472 -11.86754 -11.78076 -11.62813 -11.49145 -11.34301 -11.15748 -11.11853 -10.99443 -10.65443 -10.60528 -10.47085 -9.64444 -8.75707 -7.82202 -5.15939 -0.56719 -0.19158 1.38571 1.41425 1.42198 1.49046 1.86640 2.48666 2.53750 2.86488 3.02728 3.19430 3.28865 3.36498 3.65123 3.75540 3.83968 3.93130 4.05143 4.12346 4.16011 4.24710 4.30838 4.32435 4.33224 4.40185 4.43173 4.52230 4.61802 4.64987 4.80873 4.83818 4.90344 4.92619 4.98732 5.01359 5.09224 5.15993 5.20329 5.24997 5.30666 5.37398 5.48808 5.51962 5.60591 5.64102 5.70297 5.73122 5.85339 6.29158 6.30420 6.85696 6.99147 7.15431 7.85862 8.50363 9.27439 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.004254 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.119847 B = 6579.710984 C = 8194.575341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.216 3.784 3 N -0.532 5.532 4 C 0.313 3.687 5 N -0.526 5.526 6 C 0.195 3.805 7 C -0.243 4.243 8 C 0.561 3.439 9 O -0.572 6.572 10 N -0.596 5.596 11 C 0.095 3.905 12 C -0.128 4.128 13 C -0.107 4.107 14 C -0.095 4.095 15 H 0.032 0.968 16 C 0.158 3.842 17 H 0.036 0.964 18 C -0.113 4.113 19 C -0.137 4.137 20 C 0.174 3.826 21 N -0.612 5.612 22 C -0.220 4.220 23 H 0.071 0.929 24 C -0.060 4.060 25 N -0.944 5.944 26 Si 0.957 3.043 27 H -0.267 1.267 28 H -0.302 1.302 29 H -0.289 1.289 30 C 0.138 3.862 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.239 0.761 35 H 0.200 0.800 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.035 0.965 47 H -0.014 1.014 48 H 0.242 0.758 49 H 0.047 0.953 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.593 8.538 8.826 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.070 3.930 3 N -0.247 5.247 4 C 0.027 3.973 5 N -0.239 5.239 6 C 0.028 3.972 7 C -0.251 4.251 8 C 0.347 3.653 9 O -0.452 6.452 10 N -0.327 5.327 11 C -0.026 4.026 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.117 4.117 15 H 0.051 0.949 16 C 0.051 3.949 17 H 0.054 0.946 18 C -0.151 4.151 19 C -0.176 4.176 20 C 0.049 3.951 21 N -0.336 5.336 22 C -0.349 4.349 23 H 0.088 0.912 24 C -0.253 4.253 25 N -0.594 5.594 26 Si 0.787 3.213 27 H -0.191 1.191 28 H -0.230 1.230 29 H -0.216 1.216 30 C 0.016 3.984 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.255 0.745 35 H 0.217 0.783 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.053 0.947 47 H 0.004 0.996 48 H 0.051 0.949 49 H 0.065 0.935 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.447 9.325 8.283 23.103 hybrid contribution -2.262 -0.215 -0.839 2.422 sum 17.185 9.110 7.444 20.826 Atomic orbital electron populations 1.20994 0.87771 1.04779 1.04553 1.21847 0.97866 0.87181 0.86109 1.68436 1.11348 1.28816 1.16085 1.25985 0.86156 0.98574 0.86560 1.68598 1.40972 0.98883 1.15496 1.23821 0.89368 0.97897 0.86136 1.21475 0.97651 0.94788 1.11163 1.18271 0.81853 0.83717 0.81423 1.90851 1.35696 1.79451 1.39187 1.48240 1.35971 1.17841 1.30645 1.22387 0.89088 1.03213 0.87926 1.21974 1.01168 0.97183 0.96241 1.21574 0.96588 0.97765 0.98525 1.21773 0.97133 0.98521 0.94223 0.94922 1.21202 0.87955 0.93315 0.92427 0.94645 1.22666 0.96668 0.94730 1.01011 1.22885 0.98070 0.97381 0.99236 1.21250 0.95716 0.87755 0.90364 1.44749 1.19589 1.35524 1.33707 1.19170 0.99130 1.15585 1.01045 0.91161 1.25455 1.02365 1.01196 0.96314 1.70131 1.39116 1.41137 1.09002 0.85305 0.80176 0.78546 0.77224 1.19114 1.22978 1.21645 1.21443 0.95042 0.83746 0.98148 0.88581 0.88250 0.91150 0.74467 0.78328 0.87606 0.89301 0.93496 0.87173 0.90841 0.89345 0.90319 0.88430 0.91913 0.90170 0.94658 0.99554 0.94857 0.93452 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 9.93 71.24 0.71 -2.85 16 2 C 0.22 5.92 6.86 42.92 0.29 6.22 16 3 N -0.53 -12.53 10.36 -187.06 -1.94 -14.46 16 4 C 0.31 5.61 12.27 180.84 2.22 7.83 16 5 N -0.53 -9.95 10.42 -198.97 -2.07 -12.03 16 6 C 0.19 3.89 8.74 85.07 0.74 4.63 16 7 C -0.24 -6.55 4.90 -19.91 -0.10 -6.65 16 8 C 0.56 19.29 6.67 86.78 0.58 19.87 16 9 O -0.57 -26.44 14.61 -3.87 -0.06 -26.49 16 10 N -0.60 -17.57 2.97 -821.50 -2.44 -20.00 16 11 C 0.10 1.71 5.60 86.51 0.48 2.19 16 12 C -0.13 -2.21 6.10 30.82 0.19 -2.02 16 13 C -0.11 -2.24 4.92 30.62 0.15 -2.09 16 14 C -0.10 -3.15 2.11 -10.71 -0.02 -3.17 16 15 H 0.03 1.32 8.01 -2.39 -0.02 1.30 16 16 C 0.16 5.85 2.94 45.34 0.13 5.98 16 17 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 18 C -0.11 -3.27 5.23 31.78 0.17 -3.11 16 19 C -0.14 -4.78 7.08 31.99 0.23 -4.55 16 20 C 0.17 8.57 5.49 86.86 0.48 9.04 16 21 N -0.61 -30.48 2.47 -668.24 -1.65 -32.13 16 22 C -0.22 -12.44 9.84 84.03 0.83 -11.61 16 23 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.06 -3.55 5.48 84.86 0.46 -3.09 16 25 N -0.94 -59.05 10.43 21.65 0.23 -58.83 16 26 Si 0.96 48.52 29.55 68.60 2.03 50.55 16 27 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 28 H -0.30 -15.78 7.11 99.48 0.71 -15.08 16 29 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 30 C 0.14 4.98 5.27 86.36 0.46 5.43 16 31 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.07 2.55 5.72 -2.39 -0.01 2.54 16 34 H 0.24 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.20 2.77 7.41 -2.91 -0.02 2.75 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.40 4.73 -2.39 -0.01 1.39 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.49 7.17 -2.39 -0.02 1.47 16 42 H 0.08 2.08 5.41 -2.39 -0.01 2.07 16 43 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.03 2.00 6.65 -2.39 -0.02 1.99 16 47 H -0.01 -0.74 8.13 -2.39 -0.02 -0.76 16 48 H 0.24 14.92 8.31 -92.71 -0.77 14.14 16 49 H 0.05 2.38 6.68 -2.39 -0.02 2.37 16 50 H 0.08 2.54 5.88 -2.39 -0.01 2.52 16 Total: -1.00 -79.66 382.98 3.04 -76.61 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.95 Total: 14.73 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 8.00 Total: 22.05 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -7.87 Total: -137.45 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.06 Total: -26.49 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -79.66 3.04 -76.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963267099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.725 kcal (2) G-P(sol) polarization free energy of solvation -79.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds