Wall clock time and date at job start Wed Apr 1 2020 03:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38806 * 120.43110 * 2 1 4 4 C 1.39489 * 118.26587 * 179.97438 * 3 2 1 5 5 C 1.48461 * 120.54852 * 179.97438 * 4 3 2 6 6 O 1.21477 * 119.99681 * 351.01612 * 5 4 3 7 7 N 1.34768 * 119.99886 * 171.01966 * 5 4 3 8 8 C 1.46924 * 120.63468 * 352.63624 * 7 5 4 9 9 C 1.53190 * 108.77960 * 233.58818 * 8 7 5 10 10 C 1.53043 * 109.31403 * 305.36497 * 9 8 7 11 11 C 1.53044 * 109.53390 * 61.36305 * 10 9 8 12 12 H 1.08995 * 109.49986 * 58.58838 * 11 10 9 13 13 C 1.53010 * 109.49254 * 178.68770 * 11 10 9 14 14 H 1.09001 * 109.86992 * 180.96055 * 13 11 10 15 15 C 1.54318 * 109.88507 * 59.78163 * 13 11 10 16 16 C 1.55153 * 102.94341 * 218.38924 * 15 13 11 17 17 C 1.54910 * 101.58240 * 35.50660 * 16 15 13 18 18 N 1.47023 * 109.87992 * 301.97448 * 13 11 10 19 19 C 1.36935 * 125.64910 * 298.32604 * 18 13 11 20 20 H 1.08001 * 120.00142 * 345.48051 * 19 18 13 21 21 C 1.38811 * 120.00247 * 165.48286 * 19 18 13 22 22 N 1.31613 * 119.99873 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00220 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47163 * 59.99904 * 23 21 19 25 25 H 1.48493 * 109.47076 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46978 * 299.99753 * 23 21 19 27 27 C 1.46933 * 120.62938 * 172.61792 * 7 5 4 28 28 N 1.33100 * 118.90322 * 0.24890 * 4 3 2 29 29 C 1.31553 * 120.73355 * 359.48621 * 28 4 3 30 30 N 1.31909 * 121.91867 * 0.53369 * 29 28 4 31 31 H 1.09001 * 109.46608 * 90.00173 * 1 2 3 32 32 H 1.08998 * 109.47231 * 210.00271 * 1 2 3 33 33 H 1.09000 * 109.47213 * 330.00178 * 1 2 3 34 34 H 1.08001 * 120.86293 * 359.95011 * 3 2 1 35 35 H 1.09002 * 109.58598 * 113.79904 * 8 7 5 36 36 H 1.08999 * 109.58642 * 353.37493 * 8 7 5 37 37 H 1.08995 * 109.49989 * 185.41278 * 9 8 7 38 38 H 1.09004 * 109.50028 * 65.31629 * 9 8 7 39 39 H 1.08999 * 109.46084 * 181.38105 * 10 9 8 40 40 H 1.08995 * 109.45672 * 301.34446 * 10 9 8 41 41 H 1.09003 * 110.71829 * 336.75686 * 15 13 11 42 42 H 1.08997 * 110.72125 * 100.02424 * 15 13 11 43 43 H 1.08990 * 111.00440 * 277.42633 * 16 15 13 44 44 H 1.09002 * 111.00326 * 153.57761 * 16 15 13 45 45 H 1.08998 * 110.36801 * 204.15631 * 17 16 15 46 46 H 1.08999 * 110.46470 * 81.87245 * 17 16 15 47 47 H 0.97005 * 120.00168 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.58377 * 246.19765 * 27 7 5 49 49 H 1.09000 * 109.58285 * 6.48195 * 27 7 5 50 50 H 1.08006 * 119.03904 * 180.28692 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1968 0.0000 4 6 3.6039 1.1441 0.0005 5 6 4.4063 2.3933 0.0000 6 8 3.8603 3.4657 -0.1652 7 7 5.7404 2.3373 0.1827 8 6 6.3942 1.0718 0.5429 9 6 7.2327 1.2920 1.8060 10 6 8.1996 2.4556 1.5752 11 6 7.4051 3.7331 1.2940 12 1 6.7457 3.9442 2.1358 13 6 8.3718 4.9024 1.0958 14 1 7.8116 5.8192 0.9119 15 6 9.3120 4.6105 -0.0926 16 6 10.6710 5.1820 0.3909 17 6 10.6231 4.8591 1.9053 18 7 9.2145 5.0623 2.2900 19 6 8.7654 5.3527 3.5506 20 1 7.7575 5.7128 3.6952 21 6 9.6055 5.1842 4.6426 22 7 10.8336 4.7450 4.4665 23 14 8.9931 5.5810 6.3623 24 1 7.8188 4.7290 6.6783 25 1 10.0746 5.3189 7.3455 26 1 8.5995 7.0113 6.4297 27 6 6.5687 3.5406 0.0251 28 7 4.2028 -0.0445 -0.0040 29 6 3.4954 -1.1537 0.0012 30 7 2.1764 -1.1397 0.0006 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6913 2.1441 -0.0008 35 1 7.0408 0.7494 -0.2733 36 1 5.6375 0.3112 0.7347 37 1 7.7985 0.3876 2.0292 38 1 6.5749 1.5261 2.6431 39 1 8.8144 2.5986 2.4638 40 1 8.8405 2.2315 0.7226 41 1 9.3862 3.5378 -0.2711 42 1 8.9726 5.1291 -0.9892 43 1 10.7248 6.2574 0.2222 44 1 11.5038 4.6702 -0.0914 45 1 11.2695 5.5400 2.4590 46 1 10.9199 3.8257 2.0842 47 1 11.4209 4.6276 5.2296 48 1 7.2295 3.4194 -0.8333 49 1 5.9270 4.4084 -0.1273 50 1 4.0097 -2.1035 0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963291290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:52 Heat of formation + Delta-G solvation = 52.735455 kcal Electronic energy + Delta-G solvation = -31135.892827 eV Core-core repulsion = 27164.362968 eV Total energy + Delta-G solvation = -3971.529858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.67586 -39.89752 -38.30728 -36.45581 -34.99727 -33.06930 -32.68935 -32.17566 -31.10859 -29.31292 -29.08764 -26.89743 -25.96468 -24.56395 -24.43018 -23.57278 -22.47143 -21.29212 -20.32310 -19.60693 -18.37806 -18.18331 -17.05049 -16.63759 -16.24887 -15.81920 -15.74341 -15.42730 -15.07361 -14.77446 -14.48291 -14.17295 -13.97720 -13.83601 -13.57541 -13.44848 -13.06693 -12.94686 -12.80005 -12.69614 -12.12742 -12.02288 -11.83186 -11.51263 -11.26275 -11.09916 -10.92826 -10.85387 -10.80616 -10.56214 -10.45720 -10.31104 -10.19355 -10.10389 -9.95530 -9.88964 -9.71295 -9.62932 -9.40334 -8.99996 -8.54222 -8.43194 -6.73206 -5.71719 -3.06009 0.20805 0.51544 2.59823 2.82245 3.40972 3.45871 3.46319 3.46699 3.60372 3.63453 4.06134 4.48147 4.51207 4.58644 4.90244 5.08413 5.11228 5.21787 5.24457 5.30375 5.34923 5.37940 5.45865 5.50920 5.57836 5.72664 5.77011 5.80389 5.85156 5.90142 5.95259 5.98157 6.17680 6.24439 6.31770 6.35283 6.40013 6.47608 6.55005 6.59385 6.67470 6.74114 6.82827 7.05130 7.08867 7.21238 7.41058 7.58434 7.59385 7.66726 7.84043 8.02909 8.32417 9.24164 9.85189 10.54613 11.40259 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.002900 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.670405 B = 9652.712149 C =10374.574355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.178 3.822 3 C -0.171 4.171 4 C 0.143 3.857 5 C 0.562 3.438 6 O -0.532 6.532 7 N -0.577 5.577 8 C 0.073 3.927 9 C -0.135 4.135 10 C -0.106 4.106 11 C -0.103 4.103 12 H 0.070 0.930 13 C 0.168 3.832 14 H 0.033 0.967 15 C -0.130 4.130 16 C -0.149 4.149 17 C 0.174 3.826 18 N -0.590 5.590 19 C -0.223 4.223 20 H 0.072 0.928 21 C -0.003 4.003 22 N -0.918 5.918 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.112 3.888 28 N -0.490 5.490 29 C 0.293 3.707 30 N -0.511 5.511 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.064 0.936 36 H 0.139 0.861 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.025 0.975 47 H 0.252 0.748 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -11.734 -11.744 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.194 4.194 4 C -0.004 4.004 5 C 0.347 3.653 6 O -0.409 6.409 7 N -0.307 5.307 8 C -0.049 4.049 9 C -0.173 4.173 10 C -0.143 4.143 11 C -0.124 4.124 12 H 0.088 0.912 13 C 0.059 3.941 14 H 0.051 0.949 15 C -0.168 4.168 16 C -0.188 4.188 17 C 0.050 3.950 18 N -0.313 5.313 19 C -0.352 4.352 20 H 0.089 0.911 21 C -0.200 4.200 22 N -0.565 5.565 23 Si 0.736 3.264 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.010 4.010 28 N -0.208 5.208 29 C 0.006 3.994 30 N -0.227 5.227 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.178 0.822 35 H 0.082 0.918 36 H 0.155 0.845 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.738 -11.974 -11.604 21.605 hybrid contribution -0.490 0.822 1.054 1.423 sum -14.228 -11.152 -10.551 20.931 Atomic orbital electron populations 1.20829 0.87169 1.04487 1.04016 1.21865 0.97972 0.87728 0.89401 1.22814 0.94565 1.01452 1.00545 1.21791 0.92183 0.92657 0.93723 1.17810 0.82315 0.86743 0.78452 1.90783 1.70709 1.28603 1.50763 1.48058 1.05425 1.11914 1.65279 1.22998 0.98956 0.86022 0.96937 1.21974 0.98530 0.99581 0.97236 1.21499 0.97188 0.92648 1.02982 1.21950 0.97176 0.97416 0.95896 0.91165 1.20883 0.91254 0.93820 0.88114 0.94928 1.22691 0.96623 1.00480 0.97002 1.23004 0.95802 0.99681 1.00331 1.21401 0.86595 0.99088 0.87948 1.44450 1.01189 1.82102 1.03588 1.18891 0.98060 1.36459 0.81770 0.91064 1.24839 0.96601 1.00977 0.97585 1.69922 1.06046 1.51324 1.29159 0.86298 0.77530 0.78086 0.84455 1.21237 1.21678 1.21210 1.21954 0.93301 0.86814 0.98969 1.68472 1.39520 0.98796 1.13986 1.25186 0.86696 0.97165 0.90400 1.68216 1.10512 1.30440 1.13484 0.89319 0.89590 0.89697 0.82225 0.91814 0.84483 0.91331 0.92270 0.89428 0.92785 0.91449 0.92621 0.92524 0.92613 0.91385 0.95734 0.93756 0.91235 0.89467 0.77988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.22 36.01 0.37 -0.22 16 2 C 0.18 1.61 6.83 -82.23 -0.56 1.04 16 3 C -0.17 -1.81 9.40 -38.91 -0.37 -2.17 16 4 C 0.14 1.80 6.61 -82.64 -0.55 1.26 16 5 C 0.56 8.62 7.67 -12.05 -0.09 8.53 16 6 O -0.53 -9.43 15.89 5.39 0.09 -9.34 16 7 N -0.58 -8.66 2.97 -173.65 -0.52 -9.17 16 8 C 0.07 0.97 5.92 -3.71 -0.02 0.94 16 9 C -0.13 -2.02 6.08 -26.61 -0.16 -2.18 16 10 C -0.11 -1.87 4.74 -26.69 -0.13 -2.00 16 11 C -0.10 -1.88 2.10 -90.49 -0.19 -2.07 16 12 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 13 C 0.17 3.35 2.96 -66.95 -0.20 3.15 16 14 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 15 C -0.13 -2.21 5.10 -24.90 -0.13 -2.34 16 16 C -0.15 -2.78 7.08 -24.58 -0.17 -2.95 16 17 C 0.17 4.10 5.41 -2.53 -0.01 4.08 16 18 N -0.59 -14.32 2.28 -162.57 -0.37 -14.69 16 19 C -0.22 -6.04 9.85 -15.06 -0.15 -6.19 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C 0.00 -0.09 5.47 -17.43 -0.10 -0.19 16 22 N -0.92 -26.31 10.57 55.49 0.59 -25.72 16 23 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.11 1.77 5.58 -3.71 -0.02 1.75 16 28 N -0.49 -5.46 6.31 -11.14 -0.07 -5.53 16 29 C 0.29 2.67 12.27 -92.26 -1.13 1.54 16 30 N -0.51 -4.96 10.36 -10.81 -0.11 -5.08 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.16 1.54 7.76 -52.49 -0.41 1.13 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.14 1.70 4.01 -81.91 -0.33 1.37 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.94 7.53 -51.93 -0.39 1.55 16 40 H 0.05 0.90 6.12 -51.93 -0.32 0.58 16 41 H 0.07 1.09 5.52 -51.93 -0.29 0.80 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 1.81 6.92 -51.93 -0.36 1.45 16 46 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.07 1.01 6.92 -51.93 -0.36 0.65 16 49 H 0.09 1.47 7.00 -51.93 -0.36 1.10 16 50 H 0.20 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -31.45 386.01 -11.06 -42.50 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.84 Total: 2.20 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -3.61 Total: 1.98 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.48 Total: -60.19 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.45 -11.06 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963291290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.238 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds