Wall clock time and date at job start Wed Apr 1 2020 03:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38806 * 120.43110 * 2 1 4 4 C 1.39489 * 118.26587 * 179.97438 * 3 2 1 5 5 C 1.48461 * 120.54852 * 179.97438 * 4 3 2 6 6 O 1.21477 * 119.99681 * 351.01612 * 5 4 3 7 7 N 1.34768 * 119.99886 * 171.01966 * 5 4 3 8 8 C 1.46924 * 120.63468 * 352.63624 * 7 5 4 9 9 C 1.53190 * 108.77960 * 233.58818 * 8 7 5 10 10 C 1.53043 * 109.31403 * 305.36497 * 9 8 7 11 11 C 1.53044 * 109.53390 * 61.36305 * 10 9 8 12 12 H 1.08995 * 109.49986 * 58.58838 * 11 10 9 13 13 C 1.53010 * 109.49254 * 178.68770 * 11 10 9 14 14 H 1.09001 * 109.86992 * 180.96055 * 13 11 10 15 15 C 1.54318 * 109.88507 * 59.78163 * 13 11 10 16 16 C 1.55153 * 102.94341 * 218.38924 * 15 13 11 17 17 C 1.54910 * 101.58240 * 35.50660 * 16 15 13 18 18 N 1.47023 * 109.87992 * 301.97448 * 13 11 10 19 19 C 1.36935 * 125.64910 * 298.32604 * 18 13 11 20 20 H 1.08001 * 120.00142 * 345.48051 * 19 18 13 21 21 C 1.38811 * 120.00247 * 165.48286 * 19 18 13 22 22 N 1.31613 * 119.99873 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00220 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47163 * 59.99904 * 23 21 19 25 25 H 1.48493 * 109.47076 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46978 * 299.99753 * 23 21 19 27 27 C 1.46933 * 120.62938 * 172.61792 * 7 5 4 28 28 N 1.33100 * 118.90322 * 0.24890 * 4 3 2 29 29 C 1.31553 * 120.73355 * 359.48621 * 28 4 3 30 30 N 1.31909 * 121.91867 * 0.53369 * 29 28 4 31 31 H 1.09001 * 109.46608 * 90.00173 * 1 2 3 32 32 H 1.08998 * 109.47231 * 210.00271 * 1 2 3 33 33 H 1.09000 * 109.47213 * 330.00178 * 1 2 3 34 34 H 1.08001 * 120.86293 * 359.95011 * 3 2 1 35 35 H 1.09002 * 109.58598 * 113.79904 * 8 7 5 36 36 H 1.08999 * 109.58642 * 353.37493 * 8 7 5 37 37 H 1.08995 * 109.49989 * 185.41278 * 9 8 7 38 38 H 1.09004 * 109.50028 * 65.31629 * 9 8 7 39 39 H 1.08999 * 109.46084 * 181.38105 * 10 9 8 40 40 H 1.08995 * 109.45672 * 301.34446 * 10 9 8 41 41 H 1.09003 * 110.71829 * 336.75686 * 15 13 11 42 42 H 1.08997 * 110.72125 * 100.02424 * 15 13 11 43 43 H 1.08990 * 111.00440 * 277.42633 * 16 15 13 44 44 H 1.09002 * 111.00326 * 153.57761 * 16 15 13 45 45 H 1.08998 * 110.36801 * 204.15631 * 17 16 15 46 46 H 1.08999 * 110.46470 * 81.87245 * 17 16 15 47 47 H 0.97005 * 120.00168 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.58377 * 246.19765 * 27 7 5 49 49 H 1.09000 * 109.58285 * 6.48195 * 27 7 5 50 50 H 1.08006 * 119.03904 * 180.28692 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1968 0.0000 4 6 3.6039 1.1441 0.0005 5 6 4.4063 2.3933 0.0000 6 8 3.8603 3.4657 -0.1652 7 7 5.7404 2.3373 0.1827 8 6 6.3942 1.0718 0.5429 9 6 7.2327 1.2920 1.8060 10 6 8.1996 2.4556 1.5752 11 6 7.4051 3.7331 1.2940 12 1 6.7457 3.9442 2.1358 13 6 8.3718 4.9024 1.0958 14 1 7.8116 5.8192 0.9119 15 6 9.3120 4.6105 -0.0926 16 6 10.6710 5.1820 0.3909 17 6 10.6231 4.8591 1.9053 18 7 9.2145 5.0623 2.2900 19 6 8.7654 5.3527 3.5506 20 1 7.7575 5.7128 3.6952 21 6 9.6055 5.1842 4.6426 22 7 10.8336 4.7450 4.4665 23 14 8.9931 5.5810 6.3623 24 1 7.8188 4.7290 6.6783 25 1 10.0746 5.3189 7.3455 26 1 8.5995 7.0113 6.4297 27 6 6.5687 3.5406 0.0251 28 7 4.2028 -0.0445 -0.0040 29 6 3.4954 -1.1537 0.0012 30 7 2.1764 -1.1397 0.0006 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6913 2.1441 -0.0008 35 1 7.0408 0.7494 -0.2733 36 1 5.6375 0.3112 0.7347 37 1 7.7985 0.3876 2.0292 38 1 6.5749 1.5261 2.6431 39 1 8.8144 2.5986 2.4638 40 1 8.8405 2.2315 0.7226 41 1 9.3862 3.5378 -0.2711 42 1 8.9726 5.1291 -0.9892 43 1 10.7248 6.2574 0.2222 44 1 11.5038 4.6702 -0.0914 45 1 11.2695 5.5400 2.4590 46 1 10.9199 3.8257 2.0842 47 1 11.4209 4.6276 5.2296 48 1 7.2295 3.4194 -0.8333 49 1 5.9270 4.4084 -0.1273 50 1 4.0097 -2.1035 0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963291290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:51 Heat of formation + Delta-G solvation = 36.045475 kcal Electronic energy + Delta-G solvation = -31136.616559 eV Core-core repulsion = 27164.362968 eV Total energy + Delta-G solvation = -3972.253590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.52357 -41.09971 -39.77990 -37.86370 -35.82378 -34.63784 -33.86037 -33.48714 -32.47947 -31.20697 -29.70629 -28.37191 -27.14912 -26.43988 -25.43006 -24.47045 -23.84369 -22.62116 -21.93739 -20.92601 -19.84760 -19.16996 -18.56901 -17.96976 -17.26362 -16.96195 -16.81233 -16.63195 -16.29669 -16.24297 -15.78248 -15.66886 -15.47266 -15.19908 -14.59047 -14.42361 -14.22335 -14.04469 -13.87651 -13.79837 -13.61594 -13.22904 -13.22575 -13.15237 -12.88451 -12.74779 -12.47449 -12.24799 -12.06087 -11.94587 -11.79607 -11.75604 -11.66384 -11.55496 -11.48096 -11.40513 -11.23592 -10.94417 -10.71513 -10.63360 -9.94319 -9.68926 -8.74302 -7.84677 -5.18851 -0.66988 -0.19567 1.41779 1.43079 1.49522 1.54433 1.73050 2.48467 2.64033 2.74215 3.01426 3.23193 3.33428 3.62650 3.66438 3.81211 3.89491 3.98412 4.10715 4.16403 4.24371 4.29155 4.31269 4.38879 4.43290 4.47829 4.57428 4.63397 4.72707 4.77294 4.80061 4.81031 4.86809 4.91126 4.93520 5.08916 5.15597 5.18110 5.23255 5.30051 5.34691 5.46787 5.49238 5.56451 5.64669 5.66691 5.71573 5.72516 5.84092 6.25313 6.28270 6.77453 6.92709 7.14660 7.83181 8.50378 9.25830 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.002900 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.670405 B = 9652.712149 C =10374.574355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.183 3.817 3 C -0.176 4.176 4 C 0.123 3.877 5 C 0.558 3.442 6 O -0.565 6.565 7 N -0.581 5.581 8 C 0.080 3.920 9 C -0.129 4.129 10 C -0.095 4.095 11 C -0.091 4.091 12 H 0.029 0.971 13 C 0.158 3.842 14 H 0.023 0.977 15 C -0.116 4.116 16 C -0.136 4.136 17 C 0.180 3.820 18 N -0.606 5.606 19 C -0.229 4.229 20 H 0.063 0.937 21 C -0.055 4.055 22 N -0.942 5.942 23 Si 0.963 3.037 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.122 3.878 28 N -0.500 5.500 29 C 0.295 3.705 30 N -0.518 5.518 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.084 0.916 36 H 0.153 0.847 37 H 0.088 0.912 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.028 0.972 46 H 0.000 1.000 47 H 0.246 0.754 48 H 0.095 0.905 49 H 0.075 0.925 50 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.578 -13.711 -13.887 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.035 3.965 3 C -0.199 4.199 4 C -0.022 4.022 5 C 0.344 3.656 6 O -0.444 6.444 7 N -0.311 5.311 8 C -0.041 4.041 9 C -0.167 4.167 10 C -0.133 4.133 11 C -0.113 4.113 12 H 0.048 0.952 13 C 0.051 3.949 14 H 0.041 0.959 15 C -0.154 4.154 16 C -0.175 4.175 17 C 0.055 3.945 18 N -0.330 5.330 19 C -0.358 4.358 20 H 0.081 0.919 21 C -0.249 4.249 22 N -0.591 5.591 23 Si 0.792 3.208 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.001 4.001 28 N -0.217 5.217 29 C 0.009 3.991 30 N -0.234 5.234 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.181 0.819 35 H 0.102 0.898 36 H 0.169 0.831 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.047 0.953 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.113 0.887 49 H 0.093 0.907 50 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.263 -13.964 -13.769 24.850 hybrid contribution -0.105 1.415 1.717 2.227 sum -15.368 -12.549 -12.052 23.214 Atomic orbital electron populations 1.20968 0.84594 1.05515 1.05277 1.22397 0.99549 0.86881 0.87626 1.22946 0.93897 1.02427 1.00640 1.21455 0.92621 0.92161 0.95927 1.18240 0.82336 0.87462 0.77520 1.90753 1.71291 1.30135 1.52181 1.48144 1.05595 1.12071 1.65282 1.23120 0.99191 0.85497 0.96300 1.21931 0.97953 0.99116 0.97711 1.21342 0.97239 0.93483 1.01233 1.21711 0.96490 0.97107 0.95947 0.95217 1.21097 0.91843 0.94073 0.87887 0.95899 1.22669 0.94419 1.01786 0.96491 1.22882 0.97886 1.00427 0.96291 1.21188 0.85546 0.96585 0.91196 1.44633 1.02415 1.82014 1.03895 1.19084 0.97616 1.35634 0.83496 0.91867 1.25501 0.96908 1.01792 1.00717 1.70111 1.06825 1.52736 1.29382 0.85390 0.76867 0.77927 0.80601 1.20988 1.21769 1.20695 1.21749 0.93150 0.87246 0.97928 1.68307 1.39923 0.98712 1.14803 1.25892 0.86775 0.97641 0.88818 1.68345 1.10825 1.30549 1.13644 0.87727 0.88885 0.88351 0.81900 0.89790 0.83101 0.89336 0.94485 0.94488 0.91002 0.89946 0.89235 0.92165 0.89792 0.95339 0.98223 0.94468 0.88734 0.90670 0.74552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.22 71.24 0.73 -0.14 16 2 C 0.18 2.89 6.83 42.64 0.29 3.18 16 3 C -0.18 -3.49 9.40 22.71 0.21 -3.28 16 4 C 0.12 2.97 6.61 41.98 0.28 3.25 16 5 C 0.56 16.87 7.67 86.97 0.67 17.54 16 6 O -0.56 -20.20 15.89 -3.64 -0.06 -20.26 16 7 N -0.58 -16.89 2.97 -821.61 -2.44 -19.33 16 8 C 0.08 1.96 5.92 86.36 0.51 2.47 16 9 C -0.13 -3.78 6.08 30.67 0.19 -3.60 16 10 C -0.10 -3.40 4.74 30.62 0.15 -3.25 16 11 C -0.09 -3.40 2.10 -10.71 -0.02 -3.42 16 12 H 0.03 1.32 8.04 -2.39 -0.02 1.31 16 13 C 0.16 6.37 2.96 45.34 0.13 6.50 16 14 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 15 C -0.12 -3.67 5.10 31.78 0.16 -3.51 16 16 C -0.14 -4.86 7.08 31.99 0.23 -4.63 16 17 C 0.18 8.71 5.41 86.86 0.47 9.18 16 18 N -0.61 -30.54 2.28 -668.25 -1.52 -32.07 16 19 C -0.23 -12.96 9.85 84.03 0.83 -12.13 16 20 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 21 C -0.06 -3.19 5.47 84.86 0.46 -2.72 16 22 N -0.94 -56.50 10.57 21.65 0.23 -56.27 16 23 Si 0.96 46.97 29.55 68.60 2.03 48.99 16 24 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 27 C 0.12 3.75 5.58 86.36 0.48 4.23 16 28 N -0.50 -10.02 6.31 -189.16 -1.19 -11.21 16 29 C 0.30 4.54 12.27 180.92 2.22 6.76 16 30 N -0.52 -8.65 10.36 -188.10 -1.95 -10.60 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.56 8.10 -2.39 -0.02 0.54 16 34 H 0.16 3.02 7.76 -2.91 -0.02 3.00 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.15 3.40 4.01 -61.58 -0.25 3.15 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.04 1.23 8.14 -2.38 -0.02 1.22 16 39 H 0.04 1.70 7.53 -2.39 -0.02 1.68 16 40 H 0.07 2.28 6.12 -2.39 -0.01 2.27 16 41 H 0.08 2.38 5.52 -2.39 -0.01 2.37 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.03 1.58 6.92 -2.39 -0.02 1.56 16 46 H 0.00 -0.01 8.06 -2.39 -0.02 -0.03 16 47 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 48 H 0.09 2.46 6.92 -2.38 -0.02 2.44 16 49 H 0.07 2.52 7.00 -2.39 -0.02 2.51 16 50 H 0.24 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -73.08 386.01 3.78 -69.30 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.71 Total: 15.01 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 7.99 Total: 16.43 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -6.88 Total: -129.48 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.06 Total: -20.26 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -73.08 3.78 -69.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963291290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.345 kcal (2) G-P(sol) polarization free energy of solvation -73.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds