Wall clock time and date at job start Wed Apr 1 2020 03:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38830 * 120.41348 * 2 1 4 4 C 1.38780 * 118.50359 * 179.97438 * 3 2 1 5 5 N 1.32128 * 119.16666 * 359.97438 * 4 3 2 6 6 C 1.32444 * 120.76868 * 0.02562 * 5 4 3 7 7 C 1.48539 * 119.18236 * 179.97438 * 6 5 4 8 8 O 1.21477 * 119.99709 * 214.61800 * 7 6 5 9 9 N 1.34775 * 120.00098 * 34.62563 * 7 6 5 10 10 C 1.46927 * 120.63032 * 3.22576 * 9 7 6 11 11 C 1.53193 * 108.77514 * 126.41685 * 10 9 7 12 12 C 1.53033 * 109.31035 * 54.63623 * 11 10 9 13 13 C 1.53044 * 109.53974 * 298.63357 * 12 11 10 14 14 H 1.09004 * 109.49636 * 301.38618 * 13 12 11 15 15 C 1.52998 * 109.49669 * 181.31929 * 13 12 11 16 16 H 1.08999 * 110.00209 * 304.78509 * 15 13 12 17 17 C 1.54335 * 109.98986 * 183.75068 * 15 13 12 18 18 C 1.55155 * 103.02357 * 218.66448 * 17 15 13 19 19 C 1.54912 * 101.58076 * 35.30515 * 18 17 15 20 20 N 1.47023 * 109.88546 * 65.88545 * 15 13 12 21 21 C 1.36938 * 125.64792 * 298.39747 * 20 15 13 22 22 H 1.07999 * 119.99605 * 335.77767 * 21 20 15 23 23 C 1.38804 * 120.00131 * 155.78371 * 21 20 15 24 24 N 1.31621 * 120.00396 * 334.28799 * 23 21 20 25 25 Si 1.86800 * 120.00111 * 154.29244 * 23 21 20 26 26 H 1.48504 * 109.47180 * 59.99515 * 25 23 21 27 27 H 1.48503 * 109.47001 * 299.99941 * 25 23 21 28 28 H 1.48499 * 109.47525 * 180.02562 * 25 23 21 29 29 C 1.46924 * 120.63036 * 183.25371 * 9 7 6 30 30 N 1.32094 * 120.42208 * 180.26558 * 2 1 3 31 31 H 1.08995 * 109.47132 * 90.00562 * 1 2 3 32 32 H 1.09008 * 109.46631 * 210.00085 * 1 2 3 33 33 H 1.08998 * 109.47703 * 330.00034 * 1 2 3 34 34 H 1.07992 * 120.74677 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.41429 * 180.02562 * 4 3 2 36 36 H 1.09011 * 109.58394 * 6.63143 * 10 9 7 37 37 H 1.09002 * 109.70408 * 246.27837 * 10 9 7 38 38 H 1.08999 * 109.49574 * 294.68362 * 11 10 9 39 39 H 1.09005 * 109.49552 * 174.58946 * 11 10 9 40 40 H 1.08998 * 109.45801 * 178.61502 * 12 11 10 41 41 H 1.08994 * 109.45083 * 58.65115 * 12 11 10 42 42 H 1.08997 * 110.84987 * 100.19667 * 17 15 13 43 43 H 1.09007 * 110.51611 * 336.98018 * 17 15 13 44 44 H 1.08999 * 111.00228 * 277.23433 * 18 17 15 45 45 H 1.09002 * 111.04127 * 153.39408 * 18 17 15 46 46 H 1.08994 * 110.37041 * 204.15114 * 19 18 17 47 47 H 1.09007 * 110.36265 * 81.82886 * 19 18 17 48 48 H 0.97002 * 119.99562 * 353.95928 * 24 23 21 49 49 H 1.08998 * 109.58501 * 113.79478 * 29 9 7 50 50 H 1.09000 * 109.58803 * 353.36950 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2098 1.1973 0.0000 4 6 3.5969 1.1510 0.0005 5 7 4.2020 -0.0236 0.0016 6 6 3.5006 -1.1471 0.0015 7 6 4.2172 -2.4482 0.0021 8 8 3.7520 -3.3980 -0.5955 9 7 5.3833 -2.5750 0.6658 10 6 5.9231 -1.4567 1.4513 11 6 6.2061 -1.9457 2.8752 12 6 7.1201 -3.1718 2.8170 13 6 6.4199 -4.2962 2.0503 14 1 5.4800 -4.5428 2.5442 15 6 7.3211 -5.5323 2.0210 16 1 8.2946 -5.2742 1.6044 17 6 6.6669 -6.6420 1.1709 18 6 7.0071 -7.9336 1.9604 19 6 6.9347 -7.4315 3.4241 20 7 7.4846 -6.0643 3.3818 21 6 8.0489 -5.3981 4.4367 22 1 8.7510 -4.5975 4.2564 23 6 7.7186 -5.7517 5.7377 24 7 6.5598 -6.3223 5.9906 25 14 8.9187 -5.4178 7.1297 26 1 9.1885 -3.9598 7.2117 27 1 10.1891 -6.1425 6.8725 28 1 8.3330 -5.8863 8.4114 29 6 6.1393 -3.8339 0.6171 30 7 2.1759 -1.1391 -0.0053 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.6889 2.1432 -0.0004 35 1 4.1744 2.0637 0.0010 36 1 5.1948 -0.6462 1.4813 37 1 6.8475 -1.1007 0.9966 38 1 5.2679 -2.2141 3.3609 39 1 6.6958 -1.1534 3.4414 40 1 7.3430 -3.5069 3.8299 41 1 8.0479 -2.9090 2.3090 42 1 7.1033 -6.6741 0.1726 43 1 5.5881 -6.4959 1.1168 44 1 8.0092 -8.2873 1.7178 45 1 6.2656 -8.7112 1.7770 46 1 7.5406 -8.0642 4.0727 47 1 5.9006 -7.4140 3.7684 48 1 5.9011 -6.4162 5.2847 49 1 7.0819 -3.6740 0.0935 50 1 5.5538 -4.5918 0.0967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963300207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:00 Heat of formation + Delta-G solvation = 44.298594 kcal Electronic energy + Delta-G solvation = -31237.817956 eV Core-core repulsion = 27265.922248 eV Total energy + Delta-G solvation = -3971.895708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.63326 -39.79902 -38.20146 -36.57497 -34.92989 -33.13924 -32.84234 -32.50850 -31.11801 -29.21814 -28.93640 -27.02664 -26.18763 -24.61949 -24.08350 -23.40961 -22.60838 -20.97651 -19.99833 -19.53489 -19.13807 -18.05737 -17.58374 -17.05995 -16.48050 -16.05193 -15.58115 -15.36172 -14.84257 -14.60094 -14.24338 -14.08764 -13.82877 -13.63490 -13.56712 -13.43937 -13.26457 -12.92512 -12.73332 -12.67743 -12.55479 -12.13770 -11.94550 -11.62815 -11.47868 -11.12359 -10.88863 -10.78606 -10.66033 -10.63631 -10.26282 -10.23362 -10.18660 -10.06565 -9.95041 -9.83874 -9.73455 -9.58857 -9.45726 -9.32018 -8.45662 -8.32957 -6.84837 -6.02652 -3.15646 0.22886 0.69767 2.48784 2.66974 3.40941 3.48651 3.53692 3.70800 3.78717 3.82067 4.06885 4.48149 4.59213 4.62668 4.78492 5.01863 5.09765 5.12837 5.20021 5.30527 5.34434 5.34597 5.40121 5.48320 5.51037 5.62630 5.67475 5.71835 5.84198 5.85376 5.94958 5.98781 6.07714 6.20146 6.21990 6.28765 6.31745 6.41523 6.50558 6.55904 6.58665 6.63099 6.78510 6.88914 7.04663 7.14735 7.19874 7.32437 7.37717 7.63011 7.89810 8.10762 8.52762 9.07208 9.84116 10.45685 11.25614 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.003008 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.209783 B = 9306.697067 C =10111.123372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.172 3.828 3 C -0.215 4.215 4 C 0.143 3.857 5 N -0.492 5.492 6 C 0.300 3.700 7 C 0.584 3.416 8 O -0.515 6.515 9 N -0.581 5.581 10 C 0.105 3.895 11 C -0.135 4.135 12 C -0.126 4.126 13 C -0.098 4.098 14 H 0.067 0.933 15 C 0.167 3.833 16 H 0.035 0.965 17 C -0.130 4.130 18 C -0.137 4.137 19 C 0.143 3.857 20 N -0.591 5.591 21 C -0.326 4.326 22 H 0.064 0.936 23 C -0.025 4.025 24 N -0.914 5.914 25 Si 1.061 2.939 26 H -0.293 1.293 27 H -0.294 1.294 28 H -0.286 1.286 29 C 0.115 3.885 30 N -0.475 5.475 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.046 0.954 47 H 0.025 0.975 48 H 0.270 0.730 49 H 0.067 0.933 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 15.963 -12.381 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.025 3.975 3 C -0.237 4.237 4 C -0.022 4.022 5 N -0.209 5.209 6 C 0.030 3.970 7 C 0.367 3.633 8 O -0.389 6.389 9 N -0.313 5.313 10 C -0.017 4.017 11 C -0.174 4.174 12 C -0.163 4.163 13 C -0.120 4.120 14 H 0.086 0.914 15 C 0.060 3.940 16 H 0.053 0.947 17 C -0.168 4.168 18 C -0.175 4.175 19 C 0.018 3.982 20 N -0.316 5.316 21 C -0.454 4.454 22 H 0.082 0.918 23 C -0.227 4.227 24 N -0.554 5.554 25 Si 0.891 3.109 26 H -0.220 1.220 27 H -0.221 1.221 28 H -0.212 1.212 29 C -0.007 4.007 30 N -0.191 5.191 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.170 0.830 35 H 0.194 0.806 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.559 14.362 -10.986 19.235 hybrid contribution -0.739 1.392 -1.622 2.261 sum -7.298 15.754 -12.608 21.457 Atomic orbital electron populations 1.20825 0.87225 1.04452 1.03973 1.21896 0.98004 0.87794 0.89769 1.22983 0.96652 1.00642 1.03402 1.23373 0.92273 0.96173 0.90403 1.68570 1.40888 0.98705 1.12766 1.22942 0.87347 0.93162 0.93590 1.17282 0.80648 0.84926 0.80461 1.90790 1.65882 1.38012 1.44172 1.47934 1.20509 1.15485 1.47416 1.22138 0.99927 0.88267 0.91397 1.21994 1.00924 0.99315 0.95138 1.21922 0.96328 0.92868 1.05140 1.21959 1.00311 0.96964 0.92745 0.91438 1.20959 0.94749 0.90669 0.87668 0.94693 1.22651 1.00418 0.95901 0.97822 1.22785 1.00405 0.96473 0.97879 1.21523 0.97141 0.86821 0.92755 1.44586 1.70689 1.10320 1.06011 1.19585 1.20893 1.19398 0.85568 0.91803 1.25762 0.99101 1.00120 0.97763 1.70755 1.04168 1.44634 1.35811 0.83573 0.75224 0.75732 0.76325 1.22009 1.22148 1.21206 1.21967 0.95218 0.84345 0.99121 1.68135 1.08533 1.30609 1.11799 0.89381 0.89513 0.89813 0.82978 0.80650 0.88955 0.91117 0.92247 0.91233 0.86770 0.93321 0.92077 0.91716 0.92029 0.92204 0.93565 0.95701 0.91839 0.91442 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.22 36.01 0.37 -0.33 16 2 C 0.17 1.74 6.82 -82.26 -0.56 1.17 16 3 C -0.21 -1.57 9.87 -39.16 -0.39 -1.96 16 4 C 0.14 1.19 11.30 -17.22 -0.19 0.99 16 5 N -0.49 -6.05 7.28 -11.12 -0.08 -6.13 16 6 C 0.30 4.55 6.85 -157.07 -1.08 3.47 16 7 C 0.58 10.31 7.61 -12.01 -0.09 10.22 16 8 O -0.52 -10.55 16.44 5.39 0.09 -10.46 16 9 N -0.58 -9.51 2.97 -173.62 -0.52 -10.02 16 10 C 0.11 1.50 5.85 -3.71 -0.02 1.47 16 11 C -0.14 -2.15 6.08 -26.61 -0.16 -2.31 16 12 C -0.13 -2.33 4.64 -26.69 -0.12 -2.46 16 13 C -0.10 -1.88 1.96 -90.50 -0.18 -2.05 16 14 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 15 C 0.17 3.38 2.82 -66.95 -0.19 3.19 16 16 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 17 C -0.13 -2.32 5.45 -24.89 -0.14 -2.46 16 18 C -0.14 -2.54 7.09 -24.58 -0.17 -2.72 16 19 C 0.14 3.33 5.48 -2.53 -0.01 3.32 16 20 N -0.59 -14.34 2.95 -162.57 -0.48 -14.82 16 21 C -0.33 -8.63 7.34 -15.06 -0.11 -8.74 16 22 H 0.06 1.68 6.98 -52.49 -0.37 1.31 16 23 C -0.02 -0.68 5.17 -17.43 -0.09 -0.77 16 24 N -0.91 -27.11 13.04 55.49 0.72 -26.39 16 25 Si 1.06 24.86 29.99 -169.99 -5.10 19.76 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 C 0.12 1.93 5.30 -3.71 -0.02 1.91 16 30 N -0.47 -6.93 10.22 -7.37 -0.08 -7.00 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 34 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.18 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.09 1.24 4.76 -51.92 -0.25 1.00 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.11 2.57 4.71 -51.93 -0.24 2.33 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.18 7.33 -51.93 -0.38 0.79 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.03 0.63 6.73 -51.93 -0.35 0.28 16 48 H 0.27 8.12 6.14 -40.82 -0.25 7.87 16 49 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.09 1.60 5.90 -51.93 -0.31 1.29 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -33.64 386.67 -10.47 -44.11 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.70 Total: 3.17 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -3.16 Total: 1.97 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.43 Total: -64.37 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.10 Total: 19.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.64 -10.47 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963300207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.406 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds