Wall clock time and date at job start Wed Apr 1 2020 03:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38830 * 120.41348 * 2 1 4 4 C 1.38780 * 118.50359 * 179.97438 * 3 2 1 5 5 N 1.32128 * 119.16666 * 359.97438 * 4 3 2 6 6 C 1.32444 * 120.76868 * 0.02562 * 5 4 3 7 7 C 1.48539 * 119.18236 * 179.97438 * 6 5 4 8 8 O 1.21477 * 119.99709 * 214.61800 * 7 6 5 9 9 N 1.34775 * 120.00098 * 34.62563 * 7 6 5 10 10 C 1.46927 * 120.63032 * 3.22576 * 9 7 6 11 11 C 1.53193 * 108.77514 * 126.41685 * 10 9 7 12 12 C 1.53033 * 109.31035 * 54.63623 * 11 10 9 13 13 C 1.53044 * 109.53974 * 298.63357 * 12 11 10 14 14 H 1.09004 * 109.49636 * 301.38618 * 13 12 11 15 15 C 1.52998 * 109.49669 * 181.31929 * 13 12 11 16 16 H 1.08999 * 110.00209 * 304.78509 * 15 13 12 17 17 C 1.54335 * 109.98986 * 183.75068 * 15 13 12 18 18 C 1.55155 * 103.02357 * 218.66448 * 17 15 13 19 19 C 1.54912 * 101.58076 * 35.30515 * 18 17 15 20 20 N 1.47023 * 109.88546 * 65.88545 * 15 13 12 21 21 C 1.36938 * 125.64792 * 298.39747 * 20 15 13 22 22 H 1.07999 * 119.99605 * 335.77767 * 21 20 15 23 23 C 1.38804 * 120.00131 * 155.78371 * 21 20 15 24 24 N 1.31621 * 120.00396 * 334.28799 * 23 21 20 25 25 Si 1.86800 * 120.00111 * 154.29244 * 23 21 20 26 26 H 1.48504 * 109.47180 * 59.99515 * 25 23 21 27 27 H 1.48503 * 109.47001 * 299.99941 * 25 23 21 28 28 H 1.48499 * 109.47525 * 180.02562 * 25 23 21 29 29 C 1.46924 * 120.63036 * 183.25371 * 9 7 6 30 30 N 1.32094 * 120.42208 * 180.26558 * 2 1 3 31 31 H 1.08995 * 109.47132 * 90.00562 * 1 2 3 32 32 H 1.09008 * 109.46631 * 210.00085 * 1 2 3 33 33 H 1.08998 * 109.47703 * 330.00034 * 1 2 3 34 34 H 1.07992 * 120.74677 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.41429 * 180.02562 * 4 3 2 36 36 H 1.09011 * 109.58394 * 6.63143 * 10 9 7 37 37 H 1.09002 * 109.70408 * 246.27837 * 10 9 7 38 38 H 1.08999 * 109.49574 * 294.68362 * 11 10 9 39 39 H 1.09005 * 109.49552 * 174.58946 * 11 10 9 40 40 H 1.08998 * 109.45801 * 178.61502 * 12 11 10 41 41 H 1.08994 * 109.45083 * 58.65115 * 12 11 10 42 42 H 1.08997 * 110.84987 * 100.19667 * 17 15 13 43 43 H 1.09007 * 110.51611 * 336.98018 * 17 15 13 44 44 H 1.08999 * 111.00228 * 277.23433 * 18 17 15 45 45 H 1.09002 * 111.04127 * 153.39408 * 18 17 15 46 46 H 1.08994 * 110.37041 * 204.15114 * 19 18 17 47 47 H 1.09007 * 110.36265 * 81.82886 * 19 18 17 48 48 H 0.97002 * 119.99562 * 353.95928 * 24 23 21 49 49 H 1.08998 * 109.58501 * 113.79478 * 29 9 7 50 50 H 1.09000 * 109.58803 * 353.36950 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2098 1.1973 0.0000 4 6 3.5969 1.1510 0.0005 5 7 4.2020 -0.0236 0.0016 6 6 3.5006 -1.1471 0.0015 7 6 4.2172 -2.4482 0.0021 8 8 3.7520 -3.3980 -0.5955 9 7 5.3833 -2.5750 0.6658 10 6 5.9231 -1.4567 1.4513 11 6 6.2061 -1.9457 2.8752 12 6 7.1201 -3.1718 2.8170 13 6 6.4199 -4.2962 2.0503 14 1 5.4800 -4.5428 2.5442 15 6 7.3211 -5.5323 2.0210 16 1 8.2946 -5.2742 1.6044 17 6 6.6669 -6.6420 1.1709 18 6 7.0071 -7.9336 1.9604 19 6 6.9347 -7.4315 3.4241 20 7 7.4846 -6.0643 3.3818 21 6 8.0489 -5.3981 4.4367 22 1 8.7510 -4.5975 4.2564 23 6 7.7186 -5.7517 5.7377 24 7 6.5598 -6.3223 5.9906 25 14 8.9187 -5.4178 7.1297 26 1 9.1885 -3.9598 7.2117 27 1 10.1891 -6.1425 6.8725 28 1 8.3330 -5.8863 8.4114 29 6 6.1393 -3.8339 0.6171 30 7 2.1759 -1.1391 -0.0053 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.6889 2.1432 -0.0004 35 1 4.1744 2.0637 0.0010 36 1 5.1948 -0.6462 1.4813 37 1 6.8475 -1.1007 0.9966 38 1 5.2679 -2.2141 3.3609 39 1 6.6958 -1.1534 3.4414 40 1 7.3430 -3.5069 3.8299 41 1 8.0479 -2.9090 2.3090 42 1 7.1033 -6.6741 0.1726 43 1 5.5881 -6.4959 1.1168 44 1 8.0092 -8.2873 1.7178 45 1 6.2656 -8.7112 1.7770 46 1 7.5406 -8.0642 4.0727 47 1 5.9006 -7.4140 3.7684 48 1 5.9011 -6.4162 5.2847 49 1 7.0819 -3.6740 0.0935 50 1 5.5538 -4.5918 0.0967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963300207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:59 Heat of formation + Delta-G solvation = 23.233308 kcal Electronic energy + Delta-G solvation = -31238.731416 eV Core-core repulsion = 27265.922248 eV Total energy + Delta-G solvation = -3972.809168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.52970 -41.09461 -39.77982 -38.05464 -35.74949 -34.84278 -34.20479 -33.60342 -32.54884 -31.04440 -29.67195 -28.50308 -27.41737 -26.43359 -25.35694 -24.18099 -24.01641 -22.45047 -21.59486 -21.11948 -20.57702 -19.36768 -18.89263 -18.42192 -17.52725 -17.19599 -16.73479 -16.66258 -16.01139 -15.72050 -15.71294 -15.65842 -15.41712 -15.14947 -14.72329 -14.64973 -14.29616 -14.15350 -14.01949 -13.91040 -13.64443 -13.52472 -13.31468 -13.22254 -12.61189 -12.58130 -12.44972 -12.27817 -12.17933 -11.94640 -11.90489 -11.84059 -11.80733 -11.62057 -11.46464 -11.36510 -11.14670 -10.97454 -10.57019 -10.41968 -10.37310 -9.78502 -8.89372 -8.17863 -5.28335 -0.61292 -0.00383 1.31100 1.55080 1.57867 1.66286 1.83561 2.54984 2.67677 2.75848 3.05645 3.27591 3.47066 3.50178 3.64369 3.73877 3.86214 3.98513 4.00202 4.06984 4.12693 4.15369 4.20265 4.27035 4.32204 4.47097 4.55296 4.57197 4.59760 4.67344 4.71675 4.74734 4.76337 4.79737 4.85236 4.93250 4.95151 5.03566 5.07127 5.10432 5.17589 5.32684 5.33262 5.37787 5.44182 5.56368 5.66188 5.84374 5.86630 6.11757 6.39294 6.68987 6.91010 6.99209 7.78410 8.41747 9.08802 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.003008 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.209783 B = 9306.697067 C =10111.123372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.149 3.851 3 C -0.185 4.185 4 C 0.138 3.862 5 N -0.501 5.501 6 C 0.270 3.730 7 C 0.577 3.423 8 O -0.559 6.559 9 N -0.583 5.583 10 C 0.113 3.887 11 C -0.128 4.128 12 C -0.120 4.120 13 C -0.086 4.086 14 H 0.021 0.979 15 C 0.160 3.840 16 H 0.046 0.954 17 C -0.121 4.121 18 C -0.122 4.122 19 C 0.144 3.856 20 N -0.609 5.609 21 C -0.312 4.312 22 H 0.068 0.932 23 C -0.084 4.084 24 N -0.951 5.951 25 Si 1.110 2.890 26 H -0.271 1.271 27 H -0.282 1.282 28 H -0.299 1.299 29 C 0.124 3.876 30 N -0.517 5.517 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.203 0.797 35 H 0.223 0.777 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.031 0.969 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.018 0.982 47 H -0.006 1.006 48 H 0.251 0.749 49 H 0.093 0.907 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 19.772 -14.299 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.004 3.996 3 C -0.206 4.206 4 C -0.026 4.026 5 N -0.219 5.219 6 C 0.000 4.000 7 C 0.361 3.639 8 O -0.436 6.436 9 N -0.314 5.314 10 C -0.009 4.009 11 C -0.166 4.166 12 C -0.158 4.158 13 C -0.108 4.108 14 H 0.040 0.960 15 C 0.054 3.946 16 H 0.064 0.936 17 C -0.159 4.159 18 C -0.160 4.160 19 C 0.018 3.982 20 N -0.334 5.334 21 C -0.441 4.441 22 H 0.085 0.915 23 C -0.280 4.280 24 N -0.595 5.595 25 Si 0.935 3.065 26 H -0.196 1.196 27 H -0.209 1.209 28 H -0.226 1.226 29 C 0.002 3.998 30 N -0.235 5.235 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.220 0.780 35 H 0.239 0.761 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.050 0.950 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.036 0.964 47 H 0.012 0.988 48 H 0.061 0.939 49 H 0.111 0.889 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.705 18.219 -12.933 23.059 hybrid contribution -1.086 0.354 -1.089 1.577 sum -6.791 18.572 -14.021 24.241 Atomic orbital electron populations 1.20948 0.85079 1.05243 1.04922 1.22597 0.99540 0.87758 0.89753 1.23524 0.96374 1.01427 0.99261 1.24237 0.93401 0.96068 0.88886 1.68480 1.41141 0.99129 1.13137 1.22285 0.87719 0.92823 0.97187 1.17813 0.80540 0.85861 0.79668 1.90737 1.66910 1.39927 1.46054 1.48021 1.20392 1.15664 1.47359 1.22225 1.01216 0.87738 0.89678 1.21924 0.99119 0.98792 0.96793 1.21761 0.97695 0.93781 1.02540 1.21724 0.97849 0.96988 0.94221 0.96010 1.21160 0.95595 0.91904 0.85983 0.93606 1.22635 0.99961 0.94306 0.98987 1.22706 1.02076 0.97295 0.93955 1.21425 0.94647 0.86542 0.95583 1.44876 1.70475 1.11032 1.07028 1.19832 1.19556 1.18467 0.86228 0.91471 1.27052 0.99753 1.00628 1.00575 1.70879 1.05254 1.48168 1.35149 0.82916 0.73552 0.76879 0.73123 1.19648 1.20868 1.22573 1.21781 0.96211 0.84795 0.97001 1.68028 1.08730 1.33510 1.13215 0.88234 0.91369 0.86344 0.78004 0.76102 0.87678 0.88738 0.94992 0.88828 0.90947 0.91486 0.88467 0.92620 0.90466 0.90013 0.96355 0.98850 0.93865 0.88908 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.22 71.24 0.73 -0.41 16 2 C 0.15 2.71 6.82 42.66 0.29 3.00 16 3 C -0.18 -1.89 9.87 22.54 0.22 -1.67 16 4 C 0.14 1.72 11.30 84.78 0.96 2.68 16 5 N -0.50 -11.24 7.28 -189.09 -1.38 -12.61 16 6 C 0.27 8.16 6.85 137.68 0.94 9.10 16 7 C 0.58 20.92 7.61 86.99 0.66 21.58 16 8 O -0.56 -24.09 16.44 -3.64 -0.06 -24.15 16 9 N -0.58 -19.07 2.97 -821.51 -2.44 -21.51 16 10 C 0.11 3.04 5.85 86.36 0.51 3.55 16 11 C -0.13 -4.02 6.08 30.67 0.19 -3.84 16 12 C -0.12 -4.50 4.64 30.62 0.14 -4.36 16 13 C -0.09 -3.39 1.96 -10.72 -0.02 -3.41 16 14 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 15 C 0.16 6.50 2.82 45.34 0.13 6.63 16 16 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 17 C -0.12 -4.24 5.45 31.79 0.17 -4.07 16 18 C -0.12 -4.48 7.09 31.99 0.23 -4.25 16 19 C 0.14 7.04 5.48 86.86 0.48 7.51 16 20 N -0.61 -30.58 2.95 -668.24 -1.97 -32.55 16 21 C -0.31 -16.97 7.34 84.03 0.62 -16.36 16 22 H 0.07 3.57 6.98 -2.91 -0.02 3.55 16 23 C -0.08 -4.83 5.17 84.86 0.44 -4.40 16 24 N -0.95 -59.79 13.04 21.65 0.28 -59.51 16 25 Si 1.11 51.39 29.99 68.60 2.06 53.45 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 29 C 0.12 4.15 5.30 86.36 0.46 4.61 16 30 N -0.52 -15.19 10.22 -177.24 -1.81 -17.00 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.12 0.43 8.10 -2.39 -0.02 0.41 16 34 H 0.20 0.00 8.06 -2.91 -0.02 -0.02 16 35 H 0.22 0.59 8.06 -2.91 -0.02 0.56 16 36 H 0.11 2.65 4.76 -2.38 -0.01 2.64 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 2.48 8.14 -2.38 -0.02 2.47 16 40 H 0.07 3.35 4.71 -2.39 -0.01 3.34 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.06 2.06 7.33 -2.38 -0.02 2.04 16 44 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 46 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 47 H -0.01 -0.34 6.73 -2.38 -0.02 -0.36 16 48 H 0.25 16.31 6.14 -92.71 -0.57 15.74 16 49 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 50 H 0.08 2.86 5.90 -2.39 -0.01 2.85 16 Total: -1.00 -82.18 386.67 2.96 -79.23 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.14 Total: 18.76 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 7.14 Total: 15.89 kcal Atomic # 7 Polarization: -135.86 SS G_CDS: -7.32 Total: -143.18 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.06 Total: -24.15 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.06 Total: 53.45 kcal Total: -82.18 2.96 -79.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963300207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.459 kcal (2) G-P(sol) polarization free energy of solvation -82.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds