Wall clock time and date at job start Wed Apr 1 2020 04:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 110.77697 * 2 1 4 4 C 1.54322 * 110.71972 * 236.76197 * 2 1 3 5 5 N 1.47013 * 107.27239 * 219.44250 * 4 2 1 6 6 C 1.36932 * 125.65147 * 178.89749 * 5 4 2 7 7 H 1.08004 * 119.99787 * 341.56291 * 6 5 4 8 8 C 1.38812 * 120.00380 * 161.57062 * 6 5 4 9 9 N 1.31618 * 120.00184 * 157.59962 * 8 6 5 10 10 Si 1.86799 * 119.99827 * 337.60187 * 8 6 5 11 11 H 1.48505 * 109.47187 * 84.53888 * 10 8 6 12 12 H 1.48506 * 109.47150 * 204.53740 * 10 8 6 13 13 H 1.48497 * 109.46962 * 324.53813 * 10 8 6 14 14 C 1.47432 * 108.70303 * 358.94076 * 5 4 2 15 15 C 1.54911 * 104.82970 * 24.12952 * 14 5 4 16 16 H 1.08998 * 111.03185 * 204.90231 * 15 14 5 17 17 N 1.46495 * 111.00473 * 81.06205 * 15 14 5 18 18 C 1.34785 * 119.99478 * 92.80473 * 17 15 14 19 19 O 1.21279 * 120.00307 * 359.97438 * 18 17 15 20 20 C 1.50706 * 119.99656 * 179.97438 * 18 17 15 21 21 H 1.08996 * 109.63348 * 299.59971 * 20 18 17 22 22 C 1.53304 * 109.63445 * 178.98942 * 20 18 17 23 23 C 1.52803 * 108.53523 * 170.54960 * 22 20 18 24 24 C 1.50431 * 110.45672 * 51.01266 * 23 22 20 25 25 N 1.32900 * 118.53629 * 162.57993 * 24 23 22 26 26 C 1.31603 * 121.06229 * 179.39868 * 25 24 23 27 27 N 1.31817 * 121.67129 * 0.29061 * 26 25 24 28 28 C 1.32192 * 120.64013 * 359.56520 * 27 26 25 29 29 C 1.37771 * 122.58322 * 342.20857 * 24 23 22 30 30 C 1.50341 * 122.79509 * 0.81494 * 29 24 23 31 31 H 1.09003 * 109.47049 * 296.76250 * 1 2 3 32 32 H 1.08998 * 109.47145 * 56.75755 * 1 2 3 33 33 H 1.08998 * 109.47125 * 176.76161 * 1 2 3 34 34 H 1.08998 * 109.46463 * 183.24104 * 3 2 1 35 35 H 1.08998 * 109.47104 * 303.23623 * 3 2 1 36 36 H 1.09001 * 109.46868 * 63.24112 * 3 2 1 37 37 H 1.09000 * 109.88461 * 338.86473 * 4 2 1 38 38 H 1.09008 * 109.87896 * 99.86878 * 4 2 1 39 39 H 0.97002 * 120.00141 * 180.02562 * 9 8 6 40 40 H 1.08998 * 110.36725 * 265.28716 * 14 5 4 41 41 H 1.08998 * 110.36592 * 142.96573 * 14 5 4 42 42 H 0.96993 * 120.00368 * 272.79931 * 17 15 14 43 43 H 1.09004 * 109.62359 * 290.25914 * 22 20 18 44 44 H 1.09002 * 109.62882 * 50.63728 * 22 20 18 45 45 H 1.09006 * 109.30287 * 290.70963 * 23 22 20 46 46 H 1.09001 * 109.30320 * 171.31566 * 23 22 20 47 47 H 1.07996 * 119.16268 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.36283 * 180.23632 * 28 27 26 49 49 H 1.08994 * 109.31307 * 102.57515 * 30 29 24 50 50 H 1.09002 * 109.30746 * 222.17355 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2445 -1.5507 -0.7391 6 6 4.0033 -2.3980 -1.5014 7 1 3.6110 -2.7872 -2.4294 8 6 5.2768 -2.7569 -1.0816 9 7 5.8307 -3.8630 -1.5312 10 14 6.2045 -1.6701 0.1215 11 1 5.7962 -2.0067 1.5091 12 1 7.6644 -1.8943 -0.0331 13 1 5.8905 -0.2453 -0.1550 14 6 3.4633 -1.2497 0.6875 15 6 2.0790 -0.7954 1.2138 16 1 2.1844 -0.1520 2.0872 17 7 1.2272 -1.9488 1.5143 18 6 1.2026 -2.4618 2.7605 19 8 1.8860 -1.9689 3.6328 20 6 0.3259 -3.6479 3.0699 21 1 -0.7162 -3.3932 2.8773 22 6 0.4998 -4.0475 4.5397 23 6 -0.5627 -5.0887 4.8889 24 6 -0.5551 -6.2059 3.8816 25 7 -1.1472 -7.3523 4.2005 26 6 -1.1803 -8.3582 3.3526 27 7 -0.6263 -8.2761 2.1593 28 6 -0.0222 -7.1660 1.7719 29 6 0.0341 -6.0835 2.6423 30 6 0.7356 -4.8316 2.1942 31 1 -0.3633 0.4628 0.9176 32 1 -0.3633 0.5633 -0.8595 33 1 -0.3633 -1.0260 -0.0581 34 1 3.1610 1.4062 -0.0581 35 1 1.6751 1.9701 -0.8595 36 1 1.7691 1.9344 0.9176 37 1 1.3130 -1.4757 -1.5776 38 1 2.3715 -0.1024 -1.9988 39 1 6.7205 -4.1140 -1.2376 40 1 4.1932 -0.4478 0.7984 41 1 3.7960 -2.1426 1.2168 42 1 0.6808 -2.3432 0.8167 43 1 1.4922 -4.4731 4.6884 44 1 0.3790 -3.1698 5.1746 45 1 -1.5441 -4.6144 4.8937 46 1 -0.3572 -5.4950 5.8793 47 1 -1.6701 -9.2757 3.6434 48 1 0.4269 -7.1023 0.7917 49 1 1.8134 -4.9770 2.2659 50 1 0.4687 -4.6197 1.1589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974662412.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:52 Heat of formation + Delta-G solvation = 25.036680 kcal Electronic energy + Delta-G solvation = -31415.948940 eV Core-core repulsion = 27443.217973 eV Total energy + Delta-G solvation = -3972.730968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.54763 -40.17517 -38.58866 -36.65235 -34.28186 -33.99355 -33.25182 -31.61146 -31.35239 -30.55971 -28.41354 -27.03578 -26.18458 -25.47358 -24.48850 -23.18648 -23.15269 -21.39897 -20.65587 -19.78621 -18.90974 -17.92408 -17.16786 -16.87647 -16.76597 -16.13391 -15.55929 -15.33460 -15.07277 -14.56226 -14.17931 -14.05190 -14.01167 -13.91312 -13.76649 -13.65329 -13.32925 -13.23386 -12.89444 -12.64078 -12.38228 -12.29553 -12.15580 -12.00128 -11.67053 -11.55876 -11.34417 -11.14835 -11.12581 -10.97366 -10.80331 -10.71061 -10.55483 -10.31283 -10.21161 -10.17958 -9.60382 -9.48228 -9.37735 -9.34078 -8.86924 -8.57794 -7.07425 -5.98480 -3.28743 0.73596 0.87680 2.74713 3.29346 3.36943 3.47548 3.48547 3.57385 3.80018 4.05079 4.25594 4.35471 4.45614 4.52599 4.59932 4.69720 4.81380 4.86852 5.04859 5.07074 5.09342 5.11626 5.17169 5.24750 5.33653 5.40768 5.45712 5.51345 5.59908 5.62246 5.68617 5.73546 5.85663 5.88615 5.90940 5.92611 6.01317 6.06847 6.09192 6.20677 6.27190 6.32382 6.35878 6.53244 6.57697 6.71357 6.81525 6.84722 7.63985 7.73102 7.91670 8.26972 8.39487 8.79138 9.65532 10.13627 11.17314 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.003678 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.381014 B = 7611.403236 C = 8691.522058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.132 4.132 4 C 0.142 3.858 5 N -0.605 5.605 6 C -0.242 4.242 7 H 0.092 0.908 8 C 0.026 3.974 9 N -0.907 5.907 10 Si 0.877 3.123 11 H -0.284 1.284 12 H -0.302 1.302 13 H -0.276 1.276 14 C 0.105 3.895 15 C 0.138 3.862 16 H 0.095 0.905 17 N -0.703 5.703 18 C 0.519 3.481 19 O -0.542 6.542 20 C -0.106 4.106 21 H 0.100 0.900 22 C -0.100 4.100 23 C -0.071 4.071 24 C 0.178 3.822 25 N -0.524 5.524 26 C 0.285 3.715 27 N -0.522 5.522 28 C 0.154 3.846 29 C -0.173 4.173 30 C -0.067 4.067 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.033 0.967 41 H 0.062 0.938 42 H 0.401 0.599 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.194 0.806 48 H 0.173 0.827 49 H 0.095 0.905 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.765 0.922 9.073 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.332 5.332 6 C -0.369 4.369 7 H 0.110 0.890 8 C -0.173 4.173 9 N -0.551 5.551 10 Si 0.707 3.293 11 H -0.211 1.211 12 H -0.230 1.230 13 H -0.202 1.202 14 C -0.022 4.022 15 C 0.032 3.968 16 H 0.113 0.887 17 N -0.353 5.353 18 C 0.305 3.695 19 O -0.419 6.419 20 C -0.127 4.127 21 H 0.118 0.882 22 C -0.138 4.138 23 C -0.109 4.109 24 C 0.034 3.966 25 N -0.238 5.238 26 C -0.003 4.003 27 N -0.235 5.235 28 C -0.013 4.013 29 C -0.177 4.177 30 C -0.106 4.106 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.236 0.764 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.210 0.790 48 H 0.190 0.810 49 H 0.113 0.887 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.529 0.245 9.895 19.266 hybrid contribution 0.961 0.962 -0.131 1.366 sum -15.567 1.207 9.764 18.416 Atomic orbital electron populations 1.21702 0.94003 1.01466 1.01576 1.21880 0.95419 0.95770 0.95818 1.21729 1.01797 0.94067 1.01366 1.21473 0.90186 0.92966 0.93688 1.44747 1.32521 1.51134 1.04804 1.18588 0.95029 1.18020 1.05279 0.89050 1.24956 0.96769 0.97271 0.98290 1.69830 1.16716 1.21505 1.47010 0.87075 0.78834 0.82048 0.81345 1.21109 1.23029 1.20222 1.22331 0.93953 0.99133 0.86747 1.22157 0.91030 0.86645 0.96918 0.88695 1.45830 1.45778 1.32806 1.10905 1.20361 0.82511 0.84237 0.82407 1.90694 1.43192 1.61519 1.46512 1.21345 1.00448 0.93376 0.97568 0.88188 1.21425 0.99295 0.98819 0.94261 1.20450 1.00792 0.92379 0.97275 1.21360 0.89814 0.92974 0.92476 1.68384 1.18373 1.00796 1.36210 1.24877 0.93086 0.96935 0.85383 1.68439 1.10291 1.26390 1.18375 1.23406 0.91307 0.87071 0.99507 1.21122 1.01709 0.98800 0.96036 1.20340 1.01181 0.89380 0.99664 0.92702 0.92391 0.92734 0.91943 0.92191 0.92820 0.95002 0.94859 0.92723 0.94979 0.91992 0.76359 0.90564 0.89322 0.89089 0.88801 0.78950 0.81037 0.88703 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.07 37.16 0.30 -1.10 16 2 C -0.09 -1.24 0.80 -152.67 -0.12 -1.36 16 3 C -0.13 -1.74 8.41 37.16 0.31 -1.43 16 4 C 0.14 2.51 6.41 -3.07 -0.02 2.50 16 5 N -0.61 -13.57 3.21 -170.07 -0.55 -14.12 16 6 C -0.24 -6.54 10.57 -15.06 -0.16 -6.70 16 7 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 8 C 0.03 0.74 5.43 -17.43 -0.09 0.64 16 9 N -0.91 -27.40 13.97 55.49 0.78 -26.63 16 10 Si 0.88 22.60 24.27 -169.99 -4.13 18.48 16 11 H -0.28 -7.29 6.49 56.52 0.37 -6.93 16 12 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 13 H -0.28 -6.97 6.66 56.52 0.38 -6.60 16 14 C 0.10 2.22 4.08 -2.52 -0.01 2.21 16 15 C 0.14 2.24 2.67 -65.79 -0.18 2.07 16 16 H 0.10 1.57 7.44 -51.93 -0.39 1.18 16 17 N -0.70 -9.85 4.45 -51.73 -0.23 -10.08 16 18 C 0.52 7.38 7.14 -10.98 -0.08 7.30 16 19 O -0.54 -9.71 15.48 5.56 0.09 -9.62 16 20 C -0.11 -1.12 2.55 -91.70 -0.23 -1.35 16 21 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 22 C -0.10 -1.02 4.71 -26.67 -0.13 -1.15 16 23 C -0.07 -0.64 5.96 -28.11 -0.17 -0.81 16 24 C 0.18 1.97 6.62 -82.43 -0.55 1.43 16 25 N -0.52 -6.12 10.32 -11.00 -0.11 -6.24 16 26 C 0.29 3.12 12.29 -92.30 -1.13 1.98 16 27 N -0.52 -6.32 10.44 -14.55 -0.15 -6.47 16 28 C 0.15 1.75 10.94 -17.11 -0.19 1.57 16 29 C -0.17 -1.91 5.73 -104.68 -0.60 -2.51 16 30 C -0.07 -0.73 4.87 -28.14 -0.14 -0.87 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.55 6.48 -51.93 -0.34 0.21 16 34 H 0.06 0.96 7.57 -51.93 -0.39 0.57 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.54 7.76 -51.93 -0.40 0.14 16 38 H 0.03 0.61 7.85 -51.92 -0.41 0.20 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.03 0.73 5.24 -51.93 -0.27 0.46 16 41 H 0.06 1.49 6.63 -51.93 -0.34 1.15 16 42 H 0.40 4.90 6.79 -40.82 -0.28 4.62 16 43 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 44 H 0.09 0.91 7.80 -51.93 -0.40 0.50 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.19 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 49 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 50 H 0.09 0.89 7.82 -51.93 -0.41 0.49 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -33.57 386.68 -9.55 -43.12 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.89 Total: 3.30 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.18 Total: 2.43 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.27 Total: -63.53 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.13 Total: 18.48 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.57 -9.55 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974662412.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.160 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds