Wall clock time and date at job start Wed Apr 1 2020 04:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 110.77697 * 2 1 4 4 C 1.54322 * 110.71972 * 236.76197 * 2 1 3 5 5 N 1.47013 * 107.27239 * 219.44250 * 4 2 1 6 6 C 1.36932 * 125.65147 * 178.89749 * 5 4 2 7 7 H 1.08004 * 119.99787 * 341.56291 * 6 5 4 8 8 C 1.38812 * 120.00380 * 161.57062 * 6 5 4 9 9 N 1.31618 * 120.00184 * 157.59962 * 8 6 5 10 10 Si 1.86799 * 119.99827 * 337.60187 * 8 6 5 11 11 H 1.48505 * 109.47187 * 84.53888 * 10 8 6 12 12 H 1.48506 * 109.47150 * 204.53740 * 10 8 6 13 13 H 1.48497 * 109.46962 * 324.53813 * 10 8 6 14 14 C 1.47432 * 108.70303 * 358.94076 * 5 4 2 15 15 C 1.54911 * 104.82970 * 24.12952 * 14 5 4 16 16 H 1.08998 * 111.03185 * 204.90231 * 15 14 5 17 17 N 1.46495 * 111.00473 * 81.06205 * 15 14 5 18 18 C 1.34785 * 119.99478 * 92.80473 * 17 15 14 19 19 O 1.21279 * 120.00307 * 359.97438 * 18 17 15 20 20 C 1.50706 * 119.99656 * 179.97438 * 18 17 15 21 21 H 1.08996 * 109.63348 * 299.59971 * 20 18 17 22 22 C 1.53304 * 109.63445 * 178.98942 * 20 18 17 23 23 C 1.52803 * 108.53523 * 170.54960 * 22 20 18 24 24 C 1.50431 * 110.45672 * 51.01266 * 23 22 20 25 25 N 1.32900 * 118.53629 * 162.57993 * 24 23 22 26 26 C 1.31603 * 121.06229 * 179.39868 * 25 24 23 27 27 N 1.31817 * 121.67129 * 0.29061 * 26 25 24 28 28 C 1.32192 * 120.64013 * 359.56520 * 27 26 25 29 29 C 1.37771 * 122.58322 * 342.20857 * 24 23 22 30 30 C 1.50341 * 122.79509 * 0.81494 * 29 24 23 31 31 H 1.09003 * 109.47049 * 296.76250 * 1 2 3 32 32 H 1.08998 * 109.47145 * 56.75755 * 1 2 3 33 33 H 1.08998 * 109.47125 * 176.76161 * 1 2 3 34 34 H 1.08998 * 109.46463 * 183.24104 * 3 2 1 35 35 H 1.08998 * 109.47104 * 303.23623 * 3 2 1 36 36 H 1.09001 * 109.46868 * 63.24112 * 3 2 1 37 37 H 1.09000 * 109.88461 * 338.86473 * 4 2 1 38 38 H 1.09008 * 109.87896 * 99.86878 * 4 2 1 39 39 H 0.97002 * 120.00141 * 180.02562 * 9 8 6 40 40 H 1.08998 * 110.36725 * 265.28716 * 14 5 4 41 41 H 1.08998 * 110.36592 * 142.96573 * 14 5 4 42 42 H 0.96993 * 120.00368 * 272.79931 * 17 15 14 43 43 H 1.09004 * 109.62359 * 290.25914 * 22 20 18 44 44 H 1.09002 * 109.62882 * 50.63728 * 22 20 18 45 45 H 1.09006 * 109.30287 * 290.70963 * 23 22 20 46 46 H 1.09001 * 109.30320 * 171.31566 * 23 22 20 47 47 H 1.07996 * 119.16268 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.36283 * 180.23632 * 28 27 26 49 49 H 1.08994 * 109.31307 * 102.57515 * 30 29 24 50 50 H 1.09002 * 109.30746 * 222.17355 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2445 -1.5507 -0.7391 6 6 4.0033 -2.3980 -1.5014 7 1 3.6110 -2.7872 -2.4294 8 6 5.2768 -2.7569 -1.0816 9 7 5.8307 -3.8630 -1.5312 10 14 6.2045 -1.6701 0.1215 11 1 5.7962 -2.0067 1.5091 12 1 7.6644 -1.8943 -0.0331 13 1 5.8905 -0.2453 -0.1550 14 6 3.4633 -1.2497 0.6875 15 6 2.0790 -0.7954 1.2138 16 1 2.1844 -0.1520 2.0872 17 7 1.2272 -1.9488 1.5143 18 6 1.2026 -2.4618 2.7605 19 8 1.8860 -1.9689 3.6328 20 6 0.3259 -3.6479 3.0699 21 1 -0.7162 -3.3932 2.8773 22 6 0.4998 -4.0475 4.5397 23 6 -0.5627 -5.0887 4.8889 24 6 -0.5551 -6.2059 3.8816 25 7 -1.1472 -7.3523 4.2005 26 6 -1.1803 -8.3582 3.3526 27 7 -0.6263 -8.2761 2.1593 28 6 -0.0222 -7.1660 1.7719 29 6 0.0341 -6.0835 2.6423 30 6 0.7356 -4.8316 2.1942 31 1 -0.3633 0.4628 0.9176 32 1 -0.3633 0.5633 -0.8595 33 1 -0.3633 -1.0260 -0.0581 34 1 3.1610 1.4062 -0.0581 35 1 1.6751 1.9701 -0.8595 36 1 1.7691 1.9344 0.9176 37 1 1.3130 -1.4757 -1.5776 38 1 2.3715 -0.1024 -1.9988 39 1 6.7205 -4.1140 -1.2376 40 1 4.1932 -0.4478 0.7984 41 1 3.7960 -2.1426 1.2168 42 1 0.6808 -2.3432 0.8167 43 1 1.4922 -4.4731 4.6884 44 1 0.3790 -3.1698 5.1746 45 1 -1.5441 -4.6144 4.8937 46 1 -0.3572 -5.4950 5.8793 47 1 -1.6701 -9.2757 3.6434 48 1 0.4269 -7.1023 0.7917 49 1 1.8134 -4.9770 2.2659 50 1 0.4687 -4.6197 1.1589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974662412.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:51 Heat of formation + Delta-G solvation = 3.185453 kcal Electronic energy + Delta-G solvation = -31416.896481 eV Core-core repulsion = 27443.217973 eV Total energy + Delta-G solvation = -3973.678508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.41389 -41.39112 -39.85093 -37.62813 -35.73766 -35.12783 -34.49642 -33.27110 -32.47265 -31.48346 -29.84908 -28.06598 -27.79892 -26.41356 -25.50616 -24.55524 -24.01491 -22.85979 -21.95680 -20.87177 -20.09631 -18.88107 -18.70441 -18.08042 -17.84750 -17.41577 -17.14592 -16.59513 -16.05143 -15.69535 -15.48916 -15.25327 -15.12331 -15.06380 -14.87001 -14.84391 -14.61948 -14.32530 -14.06917 -13.92746 -13.84168 -13.50675 -13.18960 -13.09454 -12.97689 -12.86389 -12.70685 -12.44726 -12.31692 -12.19643 -11.97297 -11.86644 -11.83472 -11.76860 -11.54127 -11.40102 -11.36399 -10.87038 -10.76375 -10.23772 -10.20371 -10.02042 -9.02846 -8.20446 -5.43722 -0.10713 0.01766 1.25460 1.31844 1.37767 1.60677 2.18737 2.37165 2.72526 3.01593 3.02487 3.24664 3.32115 3.41882 3.44512 3.48587 3.59632 3.73879 3.81255 3.95070 4.01672 4.22407 4.25719 4.29841 4.33550 4.34870 4.44773 4.50361 4.54258 4.63645 4.71665 4.75935 4.80949 4.85873 4.90149 4.92791 4.96775 5.04473 5.08890 5.10578 5.14803 5.23984 5.26550 5.36162 5.45584 5.48003 5.58068 5.68078 5.96863 6.09077 6.58173 6.75586 7.07314 7.26599 7.53683 8.10791 8.99001 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.003678 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.381014 B = 7611.403236 C = 8691.522058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.132 4.132 4 C 0.136 3.864 5 N -0.617 5.617 6 C -0.220 4.220 7 H 0.071 0.929 8 C -0.028 4.028 9 N -0.951 5.951 10 Si 0.928 3.072 11 H -0.289 1.289 12 H -0.310 1.310 13 H -0.269 1.269 14 C 0.102 3.898 15 C 0.149 3.851 16 H 0.097 0.903 17 N -0.697 5.697 18 C 0.518 3.482 19 O -0.581 6.581 20 C -0.095 4.095 21 H 0.135 0.865 22 C -0.095 4.095 23 C -0.063 4.063 24 C 0.173 3.827 25 N -0.535 5.535 26 C 0.281 3.719 27 N -0.541 5.541 28 C 0.145 3.855 29 C -0.177 4.177 30 C -0.060 4.060 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.032 0.968 39 H 0.259 0.741 40 H 0.019 0.981 41 H 0.026 0.974 42 H 0.412 0.588 43 H 0.053 0.947 44 H 0.092 0.908 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.222 0.778 48 H 0.181 0.819 49 H 0.067 0.933 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.104 2.351 9.865 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.074 4.074 3 C -0.190 4.190 4 C 0.012 3.988 5 N -0.344 5.344 6 C -0.349 4.349 7 H 0.088 0.912 8 C -0.222 4.222 9 N -0.598 5.598 10 Si 0.759 3.241 11 H -0.216 1.216 12 H -0.238 1.238 13 H -0.194 1.194 14 C -0.024 4.024 15 C 0.042 3.958 16 H 0.115 0.885 17 N -0.347 5.347 18 C 0.306 3.694 19 O -0.460 6.460 20 C -0.116 4.116 21 H 0.153 0.847 22 C -0.134 4.134 23 C -0.100 4.100 24 C 0.029 3.971 25 N -0.250 5.250 26 C -0.006 4.006 27 N -0.255 5.255 28 C -0.021 4.021 29 C -0.181 4.181 30 C -0.099 4.099 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.249 0.751 43 H 0.072 0.928 44 H 0.110 0.890 45 H 0.133 0.867 46 H 0.118 0.882 47 H 0.238 0.762 48 H 0.198 0.802 49 H 0.085 0.915 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.920 1.707 10.678 22.666 hybrid contribution 1.952 0.491 -0.410 2.054 sum -17.968 2.198 10.268 20.812 Atomic orbital electron populations 1.21688 0.90507 1.02721 1.03228 1.21858 0.97947 0.95277 0.92298 1.21759 1.00000 0.93771 1.03450 1.21737 0.88533 0.93165 0.95372 1.44815 1.33007 1.51208 1.05358 1.18595 0.94844 1.17143 1.04280 0.91157 1.25421 0.97991 0.98341 1.00484 1.69928 1.17041 1.23235 1.49600 0.86245 0.77293 0.81054 0.79543 1.21631 1.23811 1.19411 1.22294 0.97022 0.97118 0.85936 1.21948 0.88660 0.87424 0.97734 0.88473 1.45784 1.45238 1.32358 1.11362 1.20992 0.82113 0.84524 0.81804 1.90680 1.44829 1.62851 1.47669 1.21347 1.01320 0.91337 0.97595 0.84711 1.21365 0.98662 0.99194 0.94142 1.20449 1.01347 0.91363 0.96855 1.21720 0.89277 0.93435 0.92713 1.68459 1.18951 1.01121 1.36428 1.25474 0.92486 0.97734 0.84905 1.68486 1.11084 1.26738 1.19152 1.23647 0.91186 0.87164 1.00113 1.21073 1.02118 0.98656 0.96263 1.20238 0.99477 0.89682 1.00510 0.91165 0.90641 0.91772 0.94784 0.90171 0.90732 0.93557 0.95036 0.93152 0.96333 0.95542 0.75066 0.92821 0.88990 0.86734 0.88164 0.76231 0.80158 0.91474 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 8.07 71.98 0.58 -1.50 16 2 C -0.07 -1.83 0.80 -50.99 -0.04 -1.87 16 3 C -0.13 -3.09 8.41 71.98 0.61 -2.48 16 4 C 0.14 4.54 6.41 86.73 0.56 5.10 16 5 N -0.62 -27.59 3.21 -691.99 -2.22 -29.81 16 6 C -0.22 -12.09 10.57 84.03 0.89 -11.20 16 7 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 8 C -0.03 -1.62 5.43 84.86 0.46 -1.16 16 9 N -0.95 -59.49 13.97 21.65 0.30 -59.19 16 10 Si 0.93 48.42 24.27 68.60 1.66 50.08 16 11 H -0.29 -15.12 6.49 99.48 0.65 -14.47 16 12 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 13 H -0.27 -13.46 6.66 99.48 0.66 -12.80 16 14 C 0.10 4.36 4.08 86.85 0.35 4.71 16 15 C 0.15 4.59 2.67 46.38 0.12 4.71 16 16 H 0.10 3.03 7.44 -2.39 -0.02 3.01 16 17 N -0.70 -18.15 4.45 -435.96 -1.94 -20.09 16 18 C 0.52 14.00 7.14 87.66 0.63 14.63 16 19 O -0.58 -20.48 15.48 -3.03 -0.05 -20.53 16 20 C -0.09 -1.81 2.55 -11.49 -0.03 -1.84 16 21 H 0.14 1.70 8.11 -2.39 -0.02 1.69 16 22 C -0.10 -1.81 4.71 30.63 0.14 -1.67 16 23 C -0.06 -0.98 5.96 29.70 0.18 -0.80 16 24 C 0.17 3.52 6.62 42.20 0.28 3.80 16 25 N -0.54 -11.56 10.32 -188.73 -1.95 -13.51 16 26 C 0.28 5.72 12.29 180.93 2.22 7.94 16 27 N -0.54 -12.56 10.44 -199.93 -2.09 -14.65 16 28 C 0.15 3.20 10.94 84.82 0.93 4.13 16 29 C -0.18 -3.71 5.73 -19.90 -0.11 -3.82 16 30 C -0.06 -1.25 4.87 29.68 0.14 -1.11 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 0.97 6.48 -2.39 -0.02 0.96 16 34 H 0.03 0.98 7.57 -2.39 -0.02 0.96 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.44 7.76 -2.39 -0.02 1.42 16 38 H 0.03 1.09 7.85 -2.38 -0.02 1.07 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.02 0.86 5.24 -2.39 -0.01 0.85 16 41 H 0.03 1.30 6.63 -2.39 -0.02 1.29 16 42 H 0.41 8.90 6.79 -92.71 -0.63 8.27 16 43 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 44 H 0.09 1.72 7.80 -2.39 -0.02 1.70 16 45 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.22 2.90 8.06 -2.91 -0.02 2.88 16 48 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 49 H 0.07 1.78 8.11 -2.39 -0.02 1.76 16 50 H 0.10 1.85 7.82 -2.39 -0.02 1.83 16 Total: -1.00 -75.75 386.68 1.85 -73.90 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.21 Total: 16.21 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 7.91 Total: 17.58 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -7.89 Total: -137.25 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.66 Total: 50.08 kcal Total: -75.75 1.85 -73.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974662412.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.089 kcal (2) G-P(sol) polarization free energy of solvation -75.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds