Wall clock time and date at job start Wed Apr 1 2020 04:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.88600 * 2 1 4 4 C 1.54911 * 111.00262 * 236.07758 * 2 1 3 5 5 N 1.47426 * 104.82755 * 278.93620 * 4 2 1 6 6 C 1.36940 * 125.64367 * 155.91801 * 5 4 2 7 7 H 1.07995 * 120.00315 * 359.97438 * 6 5 4 8 8 C 1.38822 * 119.99444 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00304 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99352 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47087 * 90.00382 * 10 8 6 12 12 H 1.48507 * 109.46884 * 209.99637 * 10 8 6 13 13 H 1.48493 * 109.47235 * 329.99751 * 10 8 6 14 14 C 1.47485 * 108.76084 * 335.89223 * 5 4 2 15 15 C 1.54321 * 107.03503 * 1.02557 * 14 5 4 16 16 H 1.09008 * 110.71515 * 140.69232 * 15 14 5 17 17 N 1.46498 * 110.72313 * 263.78728 * 15 14 5 18 18 C 1.34776 * 120.00069 * 271.16131 * 17 15 14 19 19 O 1.21284 * 120.00174 * 359.97438 * 18 17 15 20 20 C 1.50702 * 119.99861 * 180.02562 * 18 17 15 21 21 H 1.08994 * 109.63334 * 59.60039 * 20 18 17 22 22 C 1.53315 * 109.63016 * 179.97438 * 20 18 17 23 23 C 1.52810 * 108.51178 * 189.46542 * 22 20 18 24 24 C 1.50444 * 110.44066 * 308.91927 * 23 22 20 25 25 N 1.32902 * 118.52979 * 197.73323 * 24 23 22 26 26 C 1.31608 * 121.05696 * 180.30676 * 25 24 23 27 27 N 1.31819 * 121.67077 * 359.71602 * 26 25 24 28 28 C 1.32186 * 120.64298 * 0.46503 * 27 26 25 29 29 C 1.37765 * 122.58399 * 17.83286 * 24 23 22 30 30 C 1.50344 * 122.79439 * 359.24314 * 29 24 23 31 31 H 1.09009 * 109.47230 * 296.12070 * 1 2 3 32 32 H 1.09009 * 109.47421 * 56.11743 * 1 2 3 33 33 H 1.08993 * 109.47827 * 176.12029 * 1 2 3 34 34 H 1.08998 * 109.46638 * 183.88345 * 3 2 1 35 35 H 1.08997 * 109.47254 * 303.87699 * 3 2 1 36 36 H 1.08995 * 109.47417 * 63.88288 * 3 2 1 37 37 H 1.08999 * 110.36727 * 37.77299 * 4 2 1 38 38 H 1.08995 * 110.36616 * 160.09658 * 4 2 1 39 39 H 0.96990 * 119.99920 * 180.02562 * 9 8 6 40 40 H 1.09007 * 110.03451 * 241.66391 * 14 5 4 41 41 H 1.08996 * 109.96713 * 120.35395 * 14 5 4 42 42 H 0.96997 * 119.99997 * 91.15532 * 17 15 14 43 43 H 1.08997 * 109.62893 * 69.76237 * 22 20 18 44 44 H 1.08993 * 109.62982 * 309.17143 * 22 20 18 45 45 H 1.09003 * 109.30883 * 188.62240 * 23 22 20 46 46 H 1.08997 * 109.15218 * 69.11731 * 23 22 20 47 47 H 1.08001 * 119.16182 * 180.02562 * 26 25 24 48 48 H 1.08002 * 120.36575 * 179.71971 * 28 27 26 49 49 H 1.08997 * 109.30496 * 137.91394 * 30 29 24 50 50 H 1.08998 * 109.30639 * 257.30651 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0852 -0.8071 -1.2000 5 7 2.0137 -2.2162 -0.7725 6 6 1.9460 -3.3006 -1.6060 7 1 1.9415 -3.1593 -2.6766 8 6 1.8832 -4.5815 -1.0745 9 7 1.8892 -4.7537 0.2303 10 14 1.7900 -6.0607 -2.2115 11 1 3.1633 -6.5281 -2.5291 12 1 1.0379 -7.1526 -1.5426 13 1 1.0949 -5.6774 -3.4664 14 6 2.0278 -2.2659 0.7015 15 6 2.0861 -0.8074 1.2025 16 1 1.4540 -0.6759 2.0808 17 7 3.4666 -0.4150 1.4964 18 6 3.9811 -0.6283 2.7237 19 8 3.3011 -1.1446 3.5850 20 6 5.4011 -0.2240 3.0261 21 1 5.5175 0.8485 2.8706 22 6 5.7372 -0.5728 4.4807 23 6 7.0857 0.0549 4.8309 24 6 8.1173 -0.3053 3.7969 25 7 9.4021 -0.1604 4.1047 26 6 10.3458 -0.4548 3.2358 27 7 10.0606 -0.9088 2.0316 28 6 8.8048 -1.0749 1.6541 29 6 7.7815 -0.7763 2.5466 30 6 6.3581 -0.9873 2.1111 31 1 -0.3634 0.4525 0.9228 32 1 -0.3634 0.5729 -0.8532 33 1 -0.3634 -1.0252 -0.0695 34 1 3.1629 1.4033 -0.0696 35 1 1.6698 1.9732 -0.8532 36 1 1.7824 1.9302 0.9227 37 1 1.4671 -0.6469 -2.0834 38 1 3.1181 -0.5239 -1.4023 39 1 1.8456 -5.6487 0.6016 40 1 2.9050 -2.8123 1.0483 41 1 1.1206 -2.7473 1.0664 42 1 4.0104 -0.0018 0.8076 43 1 5.7969 -1.6552 4.5933 44 1 4.9659 -0.1751 5.1402 45 1 7.4102 -0.3089 5.8059 46 1 6.9766 1.1388 4.8688 47 1 11.3801 -0.3258 3.5185 48 1 8.5762 -1.4429 0.6648 49 1 6.2380 -0.6324 1.0875 50 1 6.1231 -2.0509 2.1504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974662426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:58 Heat of formation + Delta-G solvation = 3.440051 kcal Electronic energy + Delta-G solvation = -31164.827991 eV Core-core repulsion = 27191.160523 eV Total energy + Delta-G solvation = -3973.667468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.39563 -41.26005 -39.66489 -37.59012 -35.66119 -35.10550 -34.40567 -32.56971 -32.45669 -31.44988 -29.63013 -28.03980 -27.38842 -26.37198 -25.51717 -24.71375 -24.00419 -22.56225 -21.72818 -20.81546 -20.00615 -18.82898 -18.65498 -18.03070 -17.78080 -17.24587 -16.62296 -16.48871 -16.01612 -15.68538 -15.50052 -15.23666 -15.03635 -14.88849 -14.85554 -14.69430 -14.48405 -14.09715 -13.85323 -13.74642 -13.41575 -13.18135 -13.11382 -12.97589 -12.86265 -12.76904 -12.65522 -12.55380 -12.18528 -12.11445 -11.96286 -11.84815 -11.82006 -11.70327 -11.48368 -11.37639 -11.26988 -10.80069 -10.64112 -10.22535 -10.19085 -9.91827 -8.85854 -7.81683 -5.17310 -0.09600 0.03008 1.44904 1.46070 1.54846 1.69260 2.25950 2.50289 2.73543 3.02768 3.25945 3.36804 3.43492 3.48064 3.54403 3.61288 3.75948 3.78291 3.97686 4.01114 4.11451 4.24395 4.27514 4.35722 4.43973 4.46231 4.54907 4.57005 4.64575 4.74720 4.82053 4.87781 4.91064 4.92203 4.99066 5.05089 5.09124 5.12112 5.17525 5.20337 5.25989 5.36551 5.39927 5.46374 5.48829 5.59748 5.76176 5.81318 5.97927 6.19697 6.66454 7.08311 7.10549 7.36716 7.80617 8.44795 9.27181 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.003321 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.726414 B = 8428.571826 C = 9752.891856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.139 3.861 5 N -0.620 5.620 6 C -0.234 4.234 7 H 0.085 0.915 8 C -0.067 4.067 9 N -0.952 5.952 10 Si 0.972 3.028 11 H -0.287 1.287 12 H -0.301 1.301 13 H -0.266 1.266 14 C 0.194 3.806 15 C 0.138 3.862 16 H 0.075 0.925 17 N -0.698 5.698 18 C 0.515 3.485 19 O -0.583 6.583 20 C -0.094 4.094 21 H 0.135 0.865 22 C -0.096 4.096 23 C -0.063 4.063 24 C 0.171 3.829 25 N -0.536 5.536 26 C 0.281 3.719 27 N -0.540 5.540 28 C 0.147 3.853 29 C -0.177 4.177 30 C -0.059 4.059 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.028 0.972 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.035 0.965 39 H 0.242 0.758 40 H 0.003 0.997 41 H 0.001 0.999 42 H 0.410 0.590 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.114 0.886 47 H 0.221 0.779 48 H 0.186 0.814 49 H 0.106 0.894 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.852 17.425 4.187 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.076 4.076 3 C -0.181 4.181 4 C 0.014 3.986 5 N -0.346 5.346 6 C -0.363 4.363 7 H 0.103 0.897 8 C -0.259 4.259 9 N -0.601 5.601 10 Si 0.801 3.199 11 H -0.215 1.215 12 H -0.228 1.228 13 H -0.191 1.191 14 C 0.068 3.932 15 C 0.031 3.969 16 H 0.093 0.907 17 N -0.349 5.349 18 C 0.302 3.698 19 O -0.463 6.463 20 C -0.115 4.115 21 H 0.152 0.848 22 C -0.134 4.134 23 C -0.100 4.100 24 C 0.028 3.972 25 N -0.250 5.250 26 C -0.006 4.006 27 N -0.254 5.254 28 C -0.020 4.020 29 C -0.181 4.181 30 C -0.097 4.097 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.247 0.753 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.132 0.868 47 H 0.237 0.763 48 H 0.203 0.797 49 H 0.124 0.876 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.318 16.973 5.051 21.016 hybrid contribution -0.823 -1.869 -0.934 2.245 sum 10.495 15.104 4.117 18.848 Atomic orbital electron populations 1.21601 0.93229 1.00919 1.02511 1.21971 0.96425 0.95959 0.93239 1.21646 1.01157 0.92294 1.02980 1.21891 0.97747 0.83272 0.95711 1.44779 1.86593 1.01478 1.01754 1.19454 1.42024 0.85071 0.89747 0.89676 1.25590 1.03097 1.00144 0.97115 1.70219 1.58604 1.20337 1.10944 0.85167 0.77318 0.79235 0.78172 1.21460 1.22783 1.19101 1.21156 0.97058 0.91559 0.83433 1.22032 0.83025 0.94443 0.97354 0.90664 1.45860 1.13935 1.62047 1.13081 1.21040 0.89636 0.77389 0.81716 1.90698 1.62978 1.44722 1.47864 1.21333 0.89122 1.03559 0.97464 0.84776 1.21364 0.96589 1.00951 0.94532 1.20450 0.89965 1.03124 0.96480 1.21697 0.92231 0.90302 0.93008 1.68459 1.01225 1.18510 1.36830 1.25466 1.00694 0.89770 0.84709 1.68486 1.22218 1.15082 1.19602 1.23673 0.87149 0.90808 1.00324 1.21081 0.98007 1.02938 0.96060 1.20223 0.88403 1.00815 1.00305 0.91674 0.90501 0.95311 0.91462 0.90642 0.91628 0.93725 0.94767 0.94893 0.97829 0.98071 0.75263 0.92903 0.89384 0.88255 0.86800 0.76289 0.79691 0.87579 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 8.57 71.98 0.62 -3.04 16 2 C -0.07 -2.17 0.83 -50.79 -0.04 -2.22 16 3 C -0.12 -2.37 8.22 71.98 0.59 -1.78 16 4 C 0.14 4.96 6.14 86.86 0.53 5.49 16 5 N -0.62 -30.17 3.39 -690.80 -2.34 -32.51 16 6 C -0.23 -12.74 10.28 84.04 0.86 -11.87 16 7 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 8 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 9 N -0.95 -58.62 10.31 21.65 0.22 -58.40 16 10 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 14 C 0.19 9.61 4.82 86.64 0.42 10.03 16 15 C 0.14 4.94 2.54 46.18 0.12 5.06 16 16 H 0.08 2.91 7.53 -2.38 -0.02 2.90 16 17 N -0.70 -19.95 4.42 -436.92 -1.93 -21.88 16 18 C 0.51 15.35 7.13 87.66 0.62 15.97 16 19 O -0.58 -23.18 15.54 -3.04 -0.05 -23.22 16 20 C -0.09 -1.89 2.55 -11.49 -0.03 -1.92 16 21 H 0.13 1.81 8.10 -2.39 -0.02 1.79 16 22 C -0.10 -1.97 4.70 30.64 0.14 -1.82 16 23 C -0.06 -1.02 5.96 29.70 0.18 -0.85 16 24 C 0.17 3.46 6.62 42.20 0.28 3.74 16 25 N -0.54 -11.36 10.32 -188.71 -1.95 -13.30 16 26 C 0.28 5.46 12.29 180.93 2.22 7.68 16 27 N -0.54 -11.68 10.44 -199.92 -2.09 -13.77 16 28 C 0.15 2.94 10.94 84.83 0.93 3.87 16 29 C -0.18 -3.53 5.73 -19.90 -0.11 -3.64 16 30 C -0.06 -1.18 4.89 29.68 0.15 -1.04 16 31 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.03 1.06 7.91 -2.39 -0.02 1.04 16 34 H 0.07 1.09 6.43 -2.39 -0.02 1.08 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.04 1.57 8.05 -2.39 -0.02 1.55 16 38 H 0.03 1.12 7.99 -2.39 -0.02 1.10 16 39 H 0.24 14.75 8.31 -92.72 -0.77 13.98 16 40 H 0.00 0.20 7.41 -2.38 -0.02 0.18 16 41 H 0.00 0.07 7.39 -2.39 -0.02 0.05 16 42 H 0.41 9.13 6.71 -92.71 -0.62 8.51 16 43 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 44 H 0.09 1.84 7.82 -2.39 -0.02 1.82 16 45 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.22 2.72 8.06 -2.91 -0.02 2.70 16 48 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 49 H 0.11 1.72 7.89 -2.39 -0.02 1.70 16 50 H 0.07 1.75 8.11 -2.39 -0.02 1.73 16 Total: -1.00 -77.07 393.53 2.15 -74.92 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.32 Total: 19.79 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 7.94 Total: 20.34 kcal Atomic # 7 Polarization: -131.78 SS G_CDS: -8.09 Total: -139.87 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -77.07 2.15 -74.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974662426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.358 kcal (2) G-P(sol) polarization free energy of solvation -77.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds