Wall clock time and date at job start Wed Apr 1 2020 03:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38809 * 120.42367 * 2 1 4 4 C 1.39504 * 118.25975 * 180.21466 * 3 2 1 5 5 C 1.48454 * 120.54807 * 179.75697 * 4 3 2 6 6 O 1.21473 * 119.99886 * 359.72358 * 5 4 3 7 7 N 1.34776 * 119.99613 * 179.72645 * 5 4 3 8 8 C 1.46502 * 119.99395 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.67510 * 34.99954 * 8 7 5 10 10 C 1.53326 * 109.68017 * 274.49188 * 8 7 5 11 11 C 1.52818 * 108.09924 * 176.11281 * 10 8 7 12 12 C 1.50742 * 111.74335 * 58.91823 * 11 10 8 13 13 H 1.08995 * 109.26694 * 186.23796 * 12 11 10 14 14 C 1.53897 * 113.02226 * 65.12523 * 12 11 10 15 15 N 1.47817 * 104.06196 * 198.52723 * 14 12 11 16 16 C 1.36942 * 125.65302 * 203.37057 * 15 14 12 17 17 H 1.07997 * 120.00066 * 179.97438 * 16 15 14 18 18 C 1.38807 * 119.99617 * 359.97438 * 16 15 14 19 19 N 1.31628 * 120.00359 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00138 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46575 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47113 * 119.99604 * 20 18 16 23 23 H 1.48496 * 109.47092 * 240.00005 * 20 18 16 24 24 C 1.47174 * 108.70099 * 23.34834 * 15 14 12 25 25 C 1.53995 * 113.93951 * 308.68785 * 12 11 10 26 26 H 1.08991 * 112.20869 * 280.65559 * 25 12 11 27 27 C 1.52593 * 109.67311 * 155.50560 * 8 7 5 28 28 N 1.33108 * 118.90032 * 359.48731 * 4 3 2 29 29 C 1.31549 * 120.73578 * 0.27324 * 28 4 3 30 30 C 1.50705 * 119.04082 * 180.02562 * 29 28 4 31 31 N 1.31915 * 121.92177 * 359.97251 * 29 28 4 32 32 H 1.08996 * 109.47122 * 270.30206 * 1 2 3 33 33 H 1.09002 * 109.47381 * 30.30478 * 1 2 3 34 34 H 1.09000 * 109.46638 * 150.30396 * 1 2 3 35 35 H 1.07989 * 120.86992 * 359.97438 * 3 2 1 36 36 H 0.96997 * 120.00166 * 359.97438 * 7 5 4 37 37 H 1.09005 * 109.73795 * 295.76651 * 10 8 7 38 38 H 1.09005 * 109.73502 * 56.41231 * 10 8 7 39 39 H 1.08998 * 109.03167 * 179.50113 * 11 10 8 40 40 H 1.09000 * 109.02649 * 298.33680 * 11 10 8 41 41 H 1.09003 * 110.51522 * 317.17179 * 14 12 11 42 42 H 1.08997 * 110.51436 * 79.88458 * 14 12 11 43 43 H 0.96995 * 119.99985 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.96408 * 241.58444 * 24 15 14 45 45 H 1.09002 * 109.96146 * 120.33947 * 24 15 14 46 46 H 1.08999 * 109.16157 * 302.51950 * 27 8 7 47 47 H 1.08994 * 109.16098 * 61.71287 * 27 8 7 48 48 H 1.09001 * 109.47190 * 89.99218 * 30 29 28 49 49 H 1.08998 * 109.46851 * 209.99851 * 30 29 28 50 50 H 1.09002 * 109.46526 * 329.99417 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1970 0.0000 4 6 3.6039 1.1443 -0.0046 5 6 4.4062 2.3934 -0.0102 6 8 3.8493 3.4729 -0.0160 7 7 5.7524 2.3295 -0.0091 8 6 6.5441 3.5622 -0.0152 9 1 6.0346 4.3285 0.5691 10 6 6.7289 4.0501 -1.4570 11 6 7.4727 5.3843 -1.4151 12 6 8.8147 5.2546 -0.7408 13 1 9.2604 6.2435 -0.6336 14 6 9.7933 4.3549 -1.5162 15 7 10.8185 3.9927 -0.5148 16 6 12.1007 3.5992 -0.7914 17 1 12.7765 3.3552 0.0148 18 6 12.5316 3.5141 -2.1082 19 7 11.7077 3.8110 -3.0909 20 14 14.2808 2.9781 -2.4857 21 1 14.9994 2.7039 -1.2154 22 1 14.2530 1.7466 -3.3151 23 1 14.9805 4.0582 -3.2266 24 6 10.2332 4.1255 0.8290 25 6 8.7576 4.5723 0.6385 26 1 8.4261 5.2538 1.4218 27 6 7.9215 3.2911 0.5828 28 7 4.2028 -0.0444 0.0016 29 6 3.4955 -1.1536 0.0066 30 6 4.2130 -2.4788 0.0142 31 7 2.1764 -1.1397 0.0061 32 1 -0.3633 0.0054 1.0276 33 1 -0.3634 0.8872 -0.5186 34 1 -0.3632 -0.8927 -0.5091 35 1 1.6912 2.1441 -0.0004 36 1 6.1971 1.4675 -0.0042 37 1 7.3116 3.3212 -2.0204 38 1 5.7549 4.1853 -1.9275 39 1 7.6202 5.7412 -2.4344 40 1 6.8697 6.1103 -0.8697 41 1 9.2845 3.4629 -1.8816 42 1 10.2442 4.9042 -2.3427 43 1 12.0090 3.7519 -4.0109 44 1 10.7787 4.8768 1.4000 45 1 10.2678 3.1667 1.3464 46 1 7.8021 2.8966 1.5918 47 1 8.4387 2.5531 -0.0302 48 1 4.3851 -2.7930 1.0436 49 1 3.6039 -3.2247 -0.4965 50 1 5.1692 -2.3771 -0.4993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980181265.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:28 Heat of formation + Delta-G solvation = 5.291306 kcal Electronic energy + Delta-G solvation = -30256.924514 eV Core-core repulsion = 26283.337323 eV Total energy + Delta-G solvation = -3973.587191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.44687 -41.28301 -40.10904 -37.02910 -35.81977 -34.99815 -34.53971 -33.59252 -31.88346 -30.51956 -30.17546 -29.22506 -27.83645 -26.88114 -25.89680 -23.66646 -23.27157 -22.85429 -22.04893 -21.26836 -19.92166 -19.17288 -18.84045 -18.21431 -17.21496 -16.82340 -16.77943 -16.61296 -16.42252 -15.92422 -15.79534 -15.65748 -15.01300 -14.95880 -14.77636 -14.27942 -14.12389 -14.06024 -13.86469 -13.73853 -13.43715 -13.36254 -13.22238 -13.11592 -13.03121 -12.82003 -12.69164 -12.56332 -12.17542 -12.07706 -12.04854 -11.85229 -11.73065 -11.64680 -11.62886 -11.18138 -11.10738 -10.95843 -10.67125 -10.51928 -10.45570 -10.11813 -8.82647 -7.75686 -5.18109 -0.66839 -0.20883 1.45947 1.46474 1.55506 1.56781 1.80563 2.50334 2.62311 2.69091 2.85756 3.33051 3.35657 3.59427 3.69930 3.73017 3.80554 3.86548 3.97986 4.16777 4.20886 4.26867 4.32110 4.36687 4.48966 4.54458 4.58738 4.65896 4.68546 4.70653 4.73251 4.84241 4.85722 4.88626 4.95714 4.99857 5.07064 5.10978 5.14680 5.23846 5.27288 5.36117 5.36323 5.45035 5.51112 5.59890 5.73990 5.76879 5.89911 6.32782 6.33550 6.84462 6.96006 7.13571 7.81881 8.46610 9.26680 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015599 B = 0.002430 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.603720 B =11517.692910 C =12530.550680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.180 3.820 3 C -0.181 4.181 4 C 0.120 3.880 5 C 0.571 3.429 6 O -0.550 6.550 7 N -0.693 5.693 8 C 0.155 3.845 9 H 0.095 0.905 10 C -0.119 4.119 11 C -0.089 4.089 12 C -0.102 4.102 13 H 0.060 0.940 14 C 0.173 3.827 15 N -0.628 5.628 16 C -0.234 4.234 17 H 0.079 0.921 18 C -0.069 4.069 19 N -0.948 5.948 20 Si 0.976 3.024 21 H -0.267 1.267 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.131 3.869 25 C -0.074 4.074 26 H 0.111 0.889 27 C -0.104 4.104 28 N -0.515 5.515 29 C 0.310 3.690 30 C -0.084 4.084 31 N -0.518 5.518 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.171 0.829 36 H 0.415 0.585 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.081 0.919 41 H -0.007 1.007 42 H 0.060 0.940 43 H 0.245 0.755 44 H 0.023 0.977 45 H 0.027 0.973 46 H 0.082 0.918 47 H 0.050 0.950 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.058 -7.513 8.428 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.032 3.968 3 C -0.204 4.204 4 C -0.026 4.026 5 C 0.355 3.645 6 O -0.428 6.428 7 N -0.342 5.342 8 C 0.052 3.948 9 H 0.113 0.887 10 C -0.158 4.158 11 C -0.128 4.128 12 C -0.122 4.122 13 H 0.078 0.922 14 C 0.048 3.952 15 N -0.355 5.355 16 C -0.363 4.363 17 H 0.096 0.904 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.805 3.195 21 H -0.192 1.192 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.006 3.994 25 C -0.094 4.094 26 H 0.129 0.871 27 C -0.142 4.142 28 N -0.233 5.233 29 C 0.043 3.957 30 C -0.142 4.142 31 N -0.235 5.235 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.188 0.812 36 H 0.251 0.749 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.011 0.989 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.045 0.955 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.764 -7.613 8.297 25.397 hybrid contribution 1.250 0.108 -0.690 1.432 sum -21.514 -7.505 7.607 24.022 Atomic orbital electron populations 1.20961 0.84214 1.05605 1.05299 1.22487 0.99665 0.86837 0.87820 1.22980 0.93935 1.02395 1.01072 1.21623 0.92845 0.92137 0.96027 1.17967 0.82644 0.87186 0.76719 1.90764 1.71726 1.29095 1.51191 1.45957 1.05289 1.11152 1.71796 1.20975 0.91129 0.85979 0.96752 0.88691 1.21852 0.99718 0.97836 0.96373 1.20722 0.94300 0.96915 1.00851 1.21608 0.95927 0.98951 0.95672 0.92173 1.21501 0.87196 0.94400 0.92111 1.44935 1.09337 1.79168 1.02014 1.19475 0.87960 1.36640 0.92219 0.90355 1.25592 1.01998 1.03012 0.95537 1.70102 1.35132 1.56268 0.98316 0.85030 0.79709 0.76909 0.77833 1.19157 1.22061 1.21979 1.21808 0.92932 0.97482 0.87133 1.22074 0.93551 0.96142 0.97590 0.87084 1.21644 0.93204 0.97953 1.01398 1.68190 1.42145 0.98355 1.14637 1.23874 0.86896 0.95253 0.89671 1.20724 1.00160 0.88139 1.05177 1.68191 1.09754 1.31045 1.14494 0.87743 0.87917 0.89068 0.81152 0.74871 0.93145 0.91853 0.92240 0.90040 0.98930 0.92231 0.94567 0.95921 0.95497 0.89956 0.93105 0.88049 0.88208 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.22 71.24 0.73 -0.13 16 2 C 0.18 3.06 6.83 42.64 0.29 3.35 16 3 C -0.18 -3.57 9.41 22.71 0.21 -3.36 16 4 C 0.12 2.92 6.79 41.98 0.29 3.21 16 5 C 0.57 15.59 7.80 86.97 0.68 16.27 16 6 O -0.55 -17.19 16.09 -3.63 -0.06 -17.25 16 7 N -0.69 -18.18 5.09 -444.95 -2.26 -20.45 16 8 C 0.16 4.29 2.42 44.97 0.11 4.40 16 9 H 0.10 2.58 7.59 -2.39 -0.02 2.56 16 10 C -0.12 -3.66 5.40 30.64 0.17 -3.49 16 11 C -0.09 -2.76 5.37 29.80 0.16 -2.60 16 12 C -0.10 -3.73 2.81 -10.89 -0.03 -3.76 16 13 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 14 C 0.17 8.43 4.79 86.43 0.41 8.84 16 15 N -0.63 -32.30 3.41 -690.55 -2.35 -34.65 16 16 C -0.23 -13.20 10.28 84.03 0.86 -12.34 16 17 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 18 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 19 N -0.95 -57.13 10.11 21.65 0.22 -56.91 16 20 Si 0.98 46.24 29.55 68.60 2.03 48.26 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 C 0.13 5.30 6.54 87.06 0.57 5.87 16 25 C -0.07 -2.38 3.61 -9.62 -0.03 -2.41 16 26 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 27 C -0.10 -3.04 4.11 30.49 0.13 -2.92 16 28 N -0.51 -12.18 9.60 -177.07 -1.70 -13.88 16 29 C 0.31 6.41 7.64 138.79 1.06 7.47 16 30 C -0.08 -1.15 10.31 71.24 0.73 -0.41 16 31 N -0.52 -10.28 10.25 -176.04 -1.81 -12.08 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.51 8.10 -2.39 -0.02 0.49 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.17 2.87 7.74 -2.92 -0.02 2.85 16 36 H 0.41 10.38 7.99 -92.71 -0.74 9.64 16 37 H 0.05 1.78 6.80 -2.38 -0.02 1.77 16 38 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H -0.01 -0.38 6.15 -2.39 -0.01 -0.39 16 42 H 0.06 3.40 5.96 -2.39 -0.01 3.39 16 43 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.03 1.07 7.74 -2.39 -0.02 1.05 16 46 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.05 1.79 7.16 -2.39 -0.02 1.78 16 48 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 49 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -71.61 394.31 1.08 -70.54 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.21 Total: 21.93 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 6.80 Total: 14.50 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -7.90 Total: -137.98 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.06 Total: -17.25 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -71.61 1.08 -70.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980181265.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.827 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds