Wall clock time and date at job start Wed Apr 1 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38803 * 120.42509 * 2 1 4 4 C 1.39496 * 118.26073 * 180.23343 * 3 2 1 5 5 C 1.48453 * 120.55114 * 179.75899 * 4 3 2 6 6 O 1.21479 * 119.99902 * 359.72184 * 5 4 3 7 7 N 1.34770 * 120.00160 * 179.72766 * 5 4 3 8 8 C 1.46501 * 120.00044 * 179.97438 * 7 5 4 9 9 H 1.08996 * 108.96871 * 33.92067 * 8 7 5 10 10 C 1.52525 * 109.04189 * 274.99559 * 8 7 5 11 11 C 1.53817 * 111.70096 * 185.38963 * 10 8 7 12 12 C 1.51626 * 107.02221 * 57.54435 * 11 10 8 13 13 H 1.08997 * 110.50424 * 55.19860 * 12 11 10 14 14 C 1.53059 * 116.67684 * 183.74058 * 12 11 10 15 15 N 1.48660 * 103.44270 * 155.88509 * 14 12 11 16 16 C 1.36941 * 125.78119 * 155.62542 * 15 14 12 17 17 H 1.08003 * 119.99664 * 179.97438 * 16 15 14 18 18 C 1.38810 * 119.99881 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47394 * 89.99565 * 20 18 16 22 22 H 1.48503 * 109.46885 * 209.99975 * 20 18 16 23 23 H 1.48501 * 109.46704 * 329.99647 * 20 18 16 24 24 C 1.48895 * 108.52288 * 335.22832 * 15 14 12 25 25 C 1.52328 * 105.53885 * 357.42989 * 24 15 14 26 26 H 1.09004 * 109.87734 * 271.58291 * 25 24 15 27 27 C 1.51439 * 117.45352 * 145.05752 * 25 24 15 28 28 N 1.33106 * 118.90198 * 359.48819 * 4 3 2 29 29 C 1.31562 * 120.73444 * 0.27465 * 28 4 3 30 30 C 1.50700 * 119.04030 * 179.97438 * 29 28 4 31 31 N 1.31912 * 121.91659 * 359.97103 * 29 28 4 32 32 H 1.09002 * 109.46818 * 270.28251 * 1 2 3 33 33 H 1.08997 * 109.46732 * 30.28051 * 1 2 3 34 34 H 1.08998 * 109.46810 * 150.28328 * 1 2 3 35 35 H 1.07996 * 120.87348 * 0.02562 * 3 2 1 36 36 H 0.97005 * 120.00063 * 359.97438 * 7 5 4 37 37 H 1.09003 * 109.03179 * 64.82598 * 10 8 7 38 38 H 1.08997 * 109.04120 * 305.96500 * 10 8 7 39 39 H 1.08997 * 109.94324 * 176.91863 * 11 10 8 40 40 H 1.08998 * 109.94516 * 298.16537 * 11 10 8 41 41 H 1.08998 * 110.63008 * 274.37883 * 14 12 11 42 42 H 1.09002 * 110.62692 * 37.39655 * 14 12 11 43 43 H 0.97001 * 119.99435 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.55437 * 238.31562 * 24 15 14 45 45 H 1.08999 * 110.10436 * 116.30390 * 24 15 14 46 46 H 1.08996 * 109.94185 * 61.33813 * 27 25 24 47 47 H 1.09006 * 109.93921 * 300.09941 * 27 25 24 48 48 H 1.09011 * 109.47124 * 89.99675 * 30 29 28 49 49 H 1.08996 * 109.47048 * 209.99339 * 30 29 28 50 50 H 1.09004 * 109.47116 * 330.00584 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6040 1.1442 -0.0050 5 6 4.4063 2.3932 -0.0106 6 8 3.8494 3.4729 -0.0160 7 7 5.7525 2.3295 -0.0099 8 6 6.5442 3.5621 -0.0160 9 1 6.0158 4.3254 0.5551 10 6 6.7080 4.0412 -1.4548 11 6 7.6423 5.2597 -1.5456 12 6 8.9696 4.8475 -0.9394 13 1 9.3534 3.9543 -1.4323 14 6 10.0443 5.9324 -0.8359 15 7 10.9147 5.4523 0.2694 16 6 12.2312 5.7818 0.4527 17 1 12.7772 5.3775 1.2923 18 6 12.8638 6.6355 -0.4405 19 7 12.1982 7.1286 -1.4633 20 14 14.6598 7.0845 -0.1908 21 1 15.5187 6.1048 -0.9034 22 1 14.9093 8.4456 -0.7297 23 1 14.9791 7.0600 1.2593 24 6 10.1118 4.5597 1.1502 25 6 8.7038 4.5720 0.5689 26 1 8.1316 5.3930 1.0009 27 6 7.9040 3.2885 0.6496 28 7 4.2028 -0.0445 0.0008 29 6 3.4954 -1.1537 0.0058 30 6 4.2130 -2.4789 0.0117 31 7 2.1764 -1.1397 0.0057 32 1 -0.3633 0.0051 1.0277 33 1 -0.3633 0.8874 -0.5182 34 1 -0.3633 -0.8925 -0.5094 35 1 1.6914 2.1442 0.0004 36 1 6.1972 1.4674 -0.0053 37 1 5.7301 4.3128 -1.8524 38 1 7.1216 3.2306 -2.0546 39 1 7.7822 5.5440 -2.5885 40 1 7.2207 6.0941 -0.9851 41 1 10.6086 6.0039 -1.7657 42 1 9.5966 6.8934 -0.5824 43 1 12.6405 7.7249 -2.0877 44 1 10.1001 4.9399 2.1717 45 1 10.5182 3.5486 1.1294 46 1 7.7575 3.0068 1.6923 47 1 8.4246 2.4920 0.1178 48 1 4.3860 -2.7938 1.0409 49 1 3.6033 -3.2245 -0.4987 50 1 5.1687 -2.3769 -0.5024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980181273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:40 Heat of formation + Delta-G solvation = 28.016863 kcal Electronic energy + Delta-G solvation = -29762.660957 eV Core-core repulsion = 25790.059220 eV Total energy + Delta-G solvation = -3972.601737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.71040 -40.10636 -38.79411 -35.77125 -35.10986 -33.93026 -33.43503 -31.82242 -30.62098 -29.70527 -28.80980 -28.58921 -26.43605 -25.43946 -24.44616 -22.66087 -22.02057 -21.27930 -20.49952 -19.76256 -19.46255 -18.54984 -17.51051 -16.70341 -16.08771 -15.97552 -15.85739 -15.18047 -14.98471 -14.88683 -14.38213 -14.24753 -13.97981 -13.87870 -13.77359 -13.55218 -13.30810 -12.96396 -12.74447 -12.71563 -12.47048 -12.23472 -12.05445 -11.88851 -11.63558 -11.37902 -11.33246 -10.96611 -10.92385 -10.83794 -10.68144 -10.59279 -10.49496 -10.03380 -9.91685 -9.88844 -9.83669 -9.70627 -9.57473 -9.27985 -9.02188 -8.62372 -6.79507 -5.60972 -3.01656 0.11625 0.45575 2.44919 2.71202 3.37214 3.38215 3.42211 3.46960 3.47789 3.49145 4.07026 4.44718 4.46827 4.51062 4.75478 4.86008 4.89885 4.95929 5.00966 5.06664 5.13799 5.19467 5.32153 5.33792 5.37998 5.40027 5.52791 5.53242 5.63991 5.66789 5.68393 5.79796 5.91966 6.06133 6.15930 6.16426 6.24651 6.28995 6.36572 6.41782 6.47642 6.57574 6.65789 6.70298 6.88482 7.06563 7.26337 7.57900 7.58450 7.64762 7.89837 7.90142 8.37187 9.24303 9.85091 10.52299 11.43494 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027335 B = 0.001955 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.082678 B =14318.456317 C =14880.132309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.180 3.820 3 C -0.179 4.179 4 C 0.141 3.859 5 C 0.568 3.432 6 O -0.524 6.524 7 N -0.699 5.699 8 C 0.146 3.854 9 H 0.088 0.912 10 C -0.125 4.125 11 C -0.098 4.098 12 C -0.115 4.115 13 H 0.069 0.931 14 C 0.164 3.836 15 N -0.609 5.609 16 C -0.219 4.219 17 H 0.076 0.924 18 C -0.014 4.014 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.144 3.856 25 C -0.104 4.104 26 H 0.070 0.930 27 C -0.106 4.106 28 N -0.500 5.500 29 C 0.322 3.678 30 C -0.086 4.086 31 N -0.509 5.509 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.410 0.590 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.013 0.987 43 H 0.251 0.749 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.586 -17.154 1.695 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.032 3.968 3 C -0.202 4.202 4 C -0.007 4.007 5 C 0.351 3.649 6 O -0.399 6.399 7 N -0.349 5.349 8 C 0.043 3.957 9 H 0.106 0.894 10 C -0.163 4.163 11 C -0.137 4.137 12 C -0.135 4.135 13 H 0.088 0.912 14 C 0.040 3.960 15 N -0.335 5.335 16 C -0.347 4.347 17 H 0.094 0.906 18 C -0.209 4.209 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.018 3.982 25 C -0.124 4.124 26 H 0.088 0.912 27 C -0.144 4.144 28 N -0.218 5.218 29 C 0.054 3.946 30 C -0.144 4.144 31 N -0.226 5.226 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.178 0.822 36 H 0.246 0.754 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.293 -17.057 1.616 28.116 hybrid contribution 0.659 0.664 0.213 0.960 sum -21.634 -16.393 1.829 27.204 Atomic orbital electron populations 1.20828 0.87069 1.04480 1.04062 1.21857 0.97934 0.87587 0.89394 1.22797 0.94658 1.01399 1.01329 1.21712 0.92141 0.92472 0.94363 1.17781 0.82733 0.86875 0.77498 1.90810 1.71312 1.28119 1.49668 1.46054 1.05289 1.11195 1.72347 1.21252 0.91450 0.85586 0.97426 0.89378 1.21907 1.00131 0.98872 0.95423 1.21252 0.94682 0.96407 1.01311 1.22408 0.95564 1.01413 0.94089 0.91237 1.21622 0.88653 0.90921 0.94795 1.45296 1.07595 1.54004 1.26649 1.19095 0.84872 1.22536 1.08226 0.90588 1.24773 0.98378 0.99941 0.97830 1.69818 1.34723 1.36642 1.15994 0.86090 0.84591 0.77523 0.77403 1.21687 1.21713 1.20821 1.21069 0.89227 0.94243 0.93620 1.21715 0.96267 0.96173 0.98230 0.91180 1.21544 0.93752 0.98921 1.00215 1.68187 1.41646 0.98112 1.13889 1.23263 0.86458 0.94598 0.90253 1.20615 1.00169 0.89410 1.04216 1.68070 1.09800 1.30557 1.14138 0.89289 0.89659 0.89596 0.82210 0.75355 0.92042 0.92033 0.91511 0.91804 0.87783 0.96898 0.93832 0.95679 0.95833 0.91581 0.91104 0.89321 0.89397 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.22 36.01 0.37 -0.15 16 2 C 0.18 1.54 6.83 -82.23 -0.56 0.98 16 3 C -0.18 -1.72 9.41 -38.90 -0.37 -2.09 16 4 C 0.14 1.59 6.79 -82.64 -0.56 1.03 16 5 C 0.57 7.29 7.78 -12.05 -0.09 7.20 16 6 O -0.52 -8.05 16.05 5.38 0.09 -7.97 16 7 N -0.70 -8.20 5.03 -54.37 -0.27 -8.47 16 8 C 0.15 1.91 2.44 -67.73 -0.17 1.74 16 9 H 0.09 1.27 7.51 -51.93 -0.39 0.88 16 10 C -0.12 -1.70 5.37 -26.55 -0.14 -1.84 16 11 C -0.10 -1.52 5.71 -27.00 -0.15 -1.68 16 12 C -0.12 -2.13 2.51 -89.89 -0.23 -2.35 16 13 H 0.07 1.31 8.01 -51.93 -0.42 0.90 16 14 C 0.16 3.97 5.53 -2.82 -0.02 3.95 16 15 N -0.61 -15.69 3.46 -169.87 -0.59 -16.28 16 16 C -0.22 -6.16 10.30 -15.06 -0.16 -6.31 16 17 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 18 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 19 N -0.92 -27.10 10.11 55.49 0.56 -26.54 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.14 2.98 7.04 -3.06 -0.02 2.96 16 25 C -0.10 -1.78 2.28 -90.36 -0.21 -1.99 16 26 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 27 C -0.11 -1.42 5.16 -27.08 -0.14 -1.56 16 28 N -0.50 -5.33 9.60 -7.32 -0.07 -5.40 16 29 C 0.32 3.07 7.64 -157.29 -1.20 1.87 16 30 C -0.09 -0.52 10.31 36.01 0.37 -0.15 16 31 N -0.51 -4.93 10.25 -6.99 -0.07 -5.00 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.28 8.10 -51.93 -0.42 -0.14 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.16 1.35 7.74 -52.49 -0.41 0.95 16 36 H 0.41 4.23 8.00 -40.82 -0.33 3.90 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.00 7.98 -51.93 -0.41 0.59 16 41 H 0.10 2.84 5.93 -51.93 -0.31 2.53 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 48 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 49 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 399.18 15.07 6.02 6.02 Total: -1.00 -32.87 399.18 -10.86 -43.73 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.13 Total: 1.53 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -3.37 Total: 1.13 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -0.44 Total: -61.69 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.87 -10.86 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980181273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.743 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds