Wall clock time and date at job start Wed Apr 1 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38803 * 120.42509 * 2 1 4 4 C 1.39496 * 118.26073 * 180.23343 * 3 2 1 5 5 C 1.48453 * 120.55114 * 179.75899 * 4 3 2 6 6 O 1.21479 * 119.99902 * 359.72184 * 5 4 3 7 7 N 1.34770 * 120.00160 * 179.72766 * 5 4 3 8 8 C 1.46501 * 120.00044 * 179.97438 * 7 5 4 9 9 H 1.08996 * 108.96871 * 33.92067 * 8 7 5 10 10 C 1.52525 * 109.04189 * 274.99559 * 8 7 5 11 11 C 1.53817 * 111.70096 * 185.38963 * 10 8 7 12 12 C 1.51626 * 107.02221 * 57.54435 * 11 10 8 13 13 H 1.08997 * 110.50424 * 55.19860 * 12 11 10 14 14 C 1.53059 * 116.67684 * 183.74058 * 12 11 10 15 15 N 1.48660 * 103.44270 * 155.88509 * 14 12 11 16 16 C 1.36941 * 125.78119 * 155.62542 * 15 14 12 17 17 H 1.08003 * 119.99664 * 179.97438 * 16 15 14 18 18 C 1.38810 * 119.99881 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47394 * 89.99565 * 20 18 16 22 22 H 1.48503 * 109.46885 * 209.99975 * 20 18 16 23 23 H 1.48501 * 109.46704 * 329.99647 * 20 18 16 24 24 C 1.48895 * 108.52288 * 335.22832 * 15 14 12 25 25 C 1.52328 * 105.53885 * 357.42989 * 24 15 14 26 26 H 1.09004 * 109.87734 * 271.58291 * 25 24 15 27 27 C 1.51439 * 117.45352 * 145.05752 * 25 24 15 28 28 N 1.33106 * 118.90198 * 359.48819 * 4 3 2 29 29 C 1.31562 * 120.73444 * 0.27465 * 28 4 3 30 30 C 1.50700 * 119.04030 * 179.97438 * 29 28 4 31 31 N 1.31912 * 121.91659 * 359.97103 * 29 28 4 32 32 H 1.09002 * 109.46818 * 270.28251 * 1 2 3 33 33 H 1.08997 * 109.46732 * 30.28051 * 1 2 3 34 34 H 1.08998 * 109.46810 * 150.28328 * 1 2 3 35 35 H 1.07996 * 120.87348 * 0.02562 * 3 2 1 36 36 H 0.97005 * 120.00063 * 359.97438 * 7 5 4 37 37 H 1.09003 * 109.03179 * 64.82598 * 10 8 7 38 38 H 1.08997 * 109.04120 * 305.96500 * 10 8 7 39 39 H 1.08997 * 109.94324 * 176.91863 * 11 10 8 40 40 H 1.08998 * 109.94516 * 298.16537 * 11 10 8 41 41 H 1.08998 * 110.63008 * 274.37883 * 14 12 11 42 42 H 1.09002 * 110.62692 * 37.39655 * 14 12 11 43 43 H 0.97001 * 119.99435 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.55437 * 238.31562 * 24 15 14 45 45 H 1.08999 * 110.10436 * 116.30390 * 24 15 14 46 46 H 1.08996 * 109.94185 * 61.33813 * 27 25 24 47 47 H 1.09006 * 109.93921 * 300.09941 * 27 25 24 48 48 H 1.09011 * 109.47124 * 89.99675 * 30 29 28 49 49 H 1.08996 * 109.47048 * 209.99339 * 30 29 28 50 50 H 1.09004 * 109.47116 * 330.00584 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6040 1.1442 -0.0050 5 6 4.4063 2.3932 -0.0106 6 8 3.8494 3.4729 -0.0160 7 7 5.7525 2.3295 -0.0099 8 6 6.5442 3.5621 -0.0160 9 1 6.0158 4.3254 0.5551 10 6 6.7080 4.0412 -1.4548 11 6 7.6423 5.2597 -1.5456 12 6 8.9696 4.8475 -0.9394 13 1 9.3534 3.9543 -1.4323 14 6 10.0443 5.9324 -0.8359 15 7 10.9147 5.4523 0.2694 16 6 12.2312 5.7818 0.4527 17 1 12.7772 5.3775 1.2923 18 6 12.8638 6.6355 -0.4405 19 7 12.1982 7.1286 -1.4633 20 14 14.6598 7.0845 -0.1908 21 1 15.5187 6.1048 -0.9034 22 1 14.9093 8.4456 -0.7297 23 1 14.9791 7.0600 1.2593 24 6 10.1118 4.5597 1.1502 25 6 8.7038 4.5720 0.5689 26 1 8.1316 5.3930 1.0009 27 6 7.9040 3.2885 0.6496 28 7 4.2028 -0.0445 0.0008 29 6 3.4954 -1.1537 0.0058 30 6 4.2130 -2.4789 0.0117 31 7 2.1764 -1.1397 0.0057 32 1 -0.3633 0.0051 1.0277 33 1 -0.3633 0.8874 -0.5182 34 1 -0.3633 -0.8925 -0.5094 35 1 1.6914 2.1442 0.0004 36 1 6.1972 1.4674 -0.0053 37 1 5.7301 4.3128 -1.8524 38 1 7.1216 3.2306 -2.0546 39 1 7.7822 5.5440 -2.5885 40 1 7.2207 6.0941 -0.9851 41 1 10.6086 6.0039 -1.7657 42 1 9.5966 6.8934 -0.5824 43 1 12.6405 7.7249 -2.0877 44 1 10.1001 4.9399 2.1717 45 1 10.5182 3.5486 1.1294 46 1 7.7575 3.0068 1.6923 47 1 8.4246 2.4920 0.1178 48 1 4.3860 -2.7938 1.0409 49 1 3.6033 -3.2245 -0.4987 50 1 5.1687 -2.3769 -0.5024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980181273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:39 Heat of formation + Delta-G solvation = 7.758565 kcal Electronic energy + Delta-G solvation = -29763.539423 eV Core-core repulsion = 25790.059220 eV Total energy + Delta-G solvation = -3973.480203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.44346 -41.24517 -40.08264 -37.18751 -35.82317 -35.01692 -34.53713 -33.49326 -32.04136 -30.45516 -30.16681 -29.21325 -27.92677 -27.01220 -25.62554 -23.57015 -23.25659 -22.33883 -21.68496 -21.39834 -20.81600 -19.43006 -18.76172 -18.30100 -17.03123 -16.89491 -16.80167 -16.60936 -16.08306 -15.89353 -15.74623 -15.60259 -15.32814 -14.93301 -14.86130 -14.27153 -14.11673 -14.10719 -13.65597 -13.53261 -13.49725 -13.35208 -13.19765 -13.15357 -13.09558 -12.94853 -12.74465 -12.65412 -12.15083 -12.06347 -11.93848 -11.79042 -11.72697 -11.68743 -11.63301 -11.41344 -11.13858 -10.84333 -10.71246 -10.51336 -10.45772 -10.15080 -8.86948 -7.75105 -5.18671 -0.66464 -0.20617 1.46363 1.48504 1.55738 1.57006 1.77806 2.50261 2.62878 2.69180 2.86712 3.33129 3.35282 3.54902 3.63675 3.66280 3.71166 3.86789 3.94024 4.08371 4.25647 4.32515 4.35465 4.42821 4.44692 4.54384 4.66754 4.67524 4.70117 4.71157 4.74346 4.77815 4.85702 4.89703 4.95338 5.00043 5.04092 5.09366 5.15974 5.18072 5.25053 5.34359 5.37305 5.40509 5.47305 5.56021 5.73272 5.75252 5.85158 6.30672 6.33766 6.86034 6.97304 7.10851 7.77480 8.44577 9.27247 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027335 B = 0.001955 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.082678 B =14318.456317 C =14880.132309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.181 3.819 3 C -0.184 4.184 4 C 0.122 3.878 5 C 0.569 3.431 6 O -0.554 6.554 7 N -0.689 5.689 8 C 0.154 3.846 9 H 0.077 0.923 10 C -0.115 4.115 11 C -0.092 4.092 12 C -0.102 4.102 13 H 0.070 0.930 14 C 0.168 3.832 15 N -0.634 5.634 16 C -0.235 4.235 17 H 0.080 0.920 18 C -0.072 4.072 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.271 1.271 24 C 0.139 3.861 25 C -0.090 4.090 26 H 0.066 0.934 27 C -0.093 4.093 28 N -0.510 5.510 29 C 0.311 3.689 30 C -0.084 4.084 31 N -0.520 5.520 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.168 0.832 36 H 0.420 0.580 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.069 0.931 42 H -0.015 1.015 43 H 0.246 0.754 44 H 0.026 0.974 45 H 0.034 0.966 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.880 -19.415 2.372 30.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.033 3.967 3 C -0.207 4.207 4 C -0.024 4.024 5 C 0.354 3.646 6 O -0.431 6.431 7 N -0.339 5.339 8 C 0.050 3.950 9 H 0.095 0.905 10 C -0.153 4.153 11 C -0.130 4.130 12 C -0.122 4.122 13 H 0.089 0.911 14 C 0.043 3.957 15 N -0.360 5.360 16 C -0.364 4.364 17 H 0.098 0.902 18 C -0.264 4.264 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.196 1.196 24 C 0.014 3.986 25 C -0.110 4.110 26 H 0.084 0.916 27 C -0.132 4.132 28 N -0.228 5.228 29 C 0.044 3.956 30 C -0.142 4.142 31 N -0.237 5.237 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.185 0.815 36 H 0.257 0.743 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.003 0.997 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.052 0.948 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.119 0.881 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.589 -19.365 2.315 30.608 hybrid contribution 1.025 1.346 0.031 1.692 sum -22.564 -18.019 2.346 28.971 Atomic orbital electron populations 1.20964 0.84428 1.05586 1.05235 1.22439 0.99581 0.86868 0.87835 1.22969 0.94175 1.02289 1.01258 1.21576 0.92681 0.92192 0.95962 1.17998 0.82873 0.87081 0.76692 1.90791 1.71868 1.29352 1.51119 1.45888 1.05018 1.11084 1.71908 1.21032 0.91278 0.85944 0.96742 0.90494 1.21791 0.99427 0.98023 0.96074 1.21186 0.93401 0.97372 1.01081 1.22177 0.95139 0.99131 0.95734 0.91150 1.21375 0.89641 0.91756 0.92911 1.45654 1.07614 1.54654 1.28103 1.19482 0.86326 1.22409 1.08202 0.90198 1.25636 1.02556 1.00374 0.97850 1.70083 1.36101 1.37140 1.16702 0.85053 0.79659 0.76726 0.77747 1.21160 1.22171 1.19603 1.21253 0.90663 0.93586 0.93059 1.21588 0.94709 0.98320 0.96335 0.91558 1.21434 0.93073 0.96937 1.01723 1.68186 1.41885 0.98129 1.14600 1.23922 0.86810 0.95362 0.89533 1.20734 1.00287 0.87948 1.05191 1.68190 1.09969 1.30980 1.14536 0.87874 0.88024 0.89007 0.81487 0.74270 0.92027 0.91008 0.91367 0.92180 0.91322 0.99710 0.94479 0.95557 0.94770 0.89714 0.89888 0.88131 0.88352 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.22 71.24 0.73 -0.02 16 2 C 0.18 2.76 6.83 42.65 0.29 3.05 16 3 C -0.18 -3.30 9.41 22.71 0.21 -3.09 16 4 C 0.12 2.63 6.79 41.98 0.29 2.91 16 5 C 0.57 13.94 7.78 86.97 0.68 14.62 16 6 O -0.55 -16.62 16.05 -3.65 -0.06 -16.68 16 7 N -0.69 -14.85 5.03 -444.22 -2.23 -17.09 16 8 C 0.15 3.73 2.44 45.12 0.11 3.84 16 9 H 0.08 2.11 7.51 -2.39 -0.02 2.09 16 10 C -0.11 -2.93 5.37 30.71 0.16 -2.77 16 11 C -0.09 -2.81 5.71 30.42 0.17 -2.64 16 12 C -0.10 -3.77 2.51 -10.32 -0.03 -3.79 16 13 H 0.07 2.60 8.01 -2.39 -0.02 2.58 16 14 C 0.17 8.39 5.53 85.98 0.48 8.87 16 15 N -0.63 -33.26 3.46 -691.34 -2.40 -35.65 16 16 C -0.23 -13.43 10.30 84.03 0.87 -12.56 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 19 N -0.95 -57.75 10.11 21.65 0.22 -57.53 16 20 Si 0.98 46.45 29.55 68.60 2.03 48.47 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 C 0.14 5.67 7.04 85.69 0.60 6.27 16 25 C -0.09 -2.98 2.28 -10.63 -0.02 -3.01 16 26 H 0.07 2.26 7.92 -2.39 -0.02 2.24 16 27 C -0.09 -2.27 5.16 30.37 0.16 -2.11 16 28 N -0.51 -10.08 9.60 -177.08 -1.70 -11.78 16 29 C 0.31 5.41 7.64 138.78 1.06 6.47 16 30 C -0.08 -0.84 10.31 71.24 0.73 -0.10 16 31 N -0.52 -9.14 10.25 -176.04 -1.81 -10.94 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.41 8.10 -2.39 -0.02 0.39 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.17 2.64 7.74 -2.91 -0.02 2.62 16 36 H 0.42 7.65 8.00 -92.70 -0.74 6.91 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 1.89 7.98 -2.39 -0.02 1.87 16 41 H 0.07 3.93 5.93 -2.39 -0.01 3.92 16 42 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 46 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.08 1.88 8.03 -2.38 -0.02 1.86 16 48 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 49 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -72.94 399.18 1.21 -71.73 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.20 Total: 17.22 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 6.95 Total: 12.24 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -7.91 Total: -132.99 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.06 Total: -16.68 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -72.94 1.21 -71.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980181273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.490 kcal (2) G-P(sol) polarization free energy of solvation -72.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds