Wall clock time and date at job start Wed Apr 1 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31887 * 118.94901 * 2 1 4 4 C 1.32134 * 120.96477 * 179.97438 * 3 2 1 5 5 C 1.39972 * 118.92384 * 0.02562 * 4 3 2 6 6 C 1.47825 * 120.93675 * 180.02562 * 5 4 3 7 7 O 1.21557 * 120.00160 * 173.93759 * 6 5 4 8 8 N 1.34773 * 120.00245 * 353.93069 * 6 5 4 9 9 C 1.46500 * 120.00003 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.02573 * 33.93786 * 9 8 6 11 11 C 1.52530 * 109.03479 * 275.00076 * 9 8 6 12 12 C 1.53839 * 111.65504 * 293.54977 * 11 9 8 13 13 C 1.51436 * 107.03910 * 302.80200 * 12 11 9 14 14 H 1.09006 * 109.86655 * 305.81891 * 13 12 11 15 15 C 1.52322 * 117.81273 * 178.99873 * 13 12 11 16 16 N 1.48244 * 105.86508 * 214.47886 * 15 13 12 17 17 C 1.36933 * 125.78950 * 183.20424 * 16 15 13 18 18 H 1.08003 * 120.00624 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99755 * 359.97438 * 17 16 15 20 20 N 1.31624 * 120.00034 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00083 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47116 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46962 * 120.00140 * 21 19 17 24 24 H 1.48506 * 109.47335 * 239.99760 * 21 19 17 25 25 C 1.48669 * 108.42878 * 3.18900 * 16 15 13 26 26 C 1.53059 * 103.44526 * 24.37131 * 25 16 15 27 27 H 1.09004 * 111.36434 * 75.99970 * 26 25 16 28 28 C 1.51625 * 116.66642 * 204.13067 * 26 25 16 29 29 C 1.39926 * 118.11769 * 0.27265 * 5 4 3 30 30 C 1.50704 * 120.53249 * 179.70554 * 29 5 4 31 31 N 1.31851 * 118.95196 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46739 * 90.00608 * 1 2 3 33 33 H 1.09001 * 109.47056 * 209.99684 * 1 2 3 34 34 H 1.08995 * 109.47787 * 330.00418 * 1 2 3 35 35 H 1.08004 * 120.53611 * 180.02562 * 4 3 2 36 36 H 0.96996 * 120.00309 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.04566 * 172.98535 * 11 9 8 38 38 H 1.09001 * 109.04159 * 54.10671 * 11 9 8 39 39 H 1.08998 * 109.94513 * 183.41605 * 12 11 9 40 40 H 1.09003 * 109.94182 * 62.18083 * 12 11 9 41 41 H 1.08994 * 110.17294 * 333.57938 * 15 13 12 42 42 H 1.09001 * 110.17531 * 95.31172 * 15 13 12 43 43 H 0.97001 * 119.99951 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.62017 * 265.88255 * 25 16 15 45 45 H 1.08999 * 110.62755 * 142.86714 * 25 16 15 46 46 H 1.08999 * 109.94427 * 295.61176 * 28 26 25 47 47 H 1.09001 * 109.94202 * 56.85529 * 28 26 25 48 48 H 1.09005 * 109.47180 * 83.67183 * 30 29 5 49 49 H 1.09007 * 109.47044 * 203.66752 * 30 29 5 50 50 H 1.08999 * 109.47105 * 323.67157 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2006 0.0005 5 6 4.1855 0.0000 0.0005 6 6 5.6638 0.0001 0.0016 7 8 6.2716 -1.0468 0.1128 8 7 6.3377 1.1608 -0.1207 9 6 7.8027 1.1607 -0.1202 10 1 8.1582 0.2501 -0.6023 11 6 8.2997 1.1866 1.3217 12 6 7.9445 2.5101 2.0208 13 6 8.5501 3.6251 1.1941 14 1 9.6159 3.4449 1.0532 15 6 8.3242 5.0579 1.6592 16 7 8.2137 5.8718 0.4251 17 6 8.0678 7.2324 0.3736 18 1 7.9966 7.7322 -0.5811 19 6 8.0116 7.9693 1.5486 20 7 8.0989 7.3604 2.7122 21 14 7.8133 9.8254 1.4784 22 1 7.7412 10.2623 0.0610 23 1 6.5654 10.2169 2.1818 24 1 8.9764 10.4728 2.1368 25 6 8.2884 4.9606 -0.7472 26 6 7.8248 3.6156 -0.1826 27 1 6.7433 3.5929 -0.0480 28 6 8.2956 2.3726 -0.9123 29 6 3.4661 -1.2001 -0.0059 30 6 4.1858 -2.5242 -0.0129 31 7 2.1453 -1.1537 0.0005 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5137 35 1 3.9816 2.1495 0.0009 36 1 5.8529 1.9962 -0.2092 37 1 9.3824 1.0608 1.3271 38 1 7.8444 0.3616 1.8696 39 1 8.3639 2.5234 3.0268 40 1 6.8618 2.6274 2.0668 41 1 7.4025 5.1245 2.2372 42 1 9.1690 5.3960 2.2593 43 1 8.0592 7.8753 3.5333 44 1 9.3123 4.8906 -1.1143 45 1 7.6179 5.2967 -1.5381 46 1 7.8803 2.3533 -1.9199 47 1 9.3846 2.3582 -0.9576 48 1 4.4588 -2.7948 1.0071 49 1 3.5323 -3.2907 -0.4296 50 1 5.0867 -2.4448 -0.6213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980195053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:46 Heat of formation + Delta-G solvation = 13.656463 kcal Electronic energy + Delta-G solvation = -30764.516523 eV Core-core repulsion = 26791.292073 eV Total energy + Delta-G solvation = -3973.224451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.51228 -41.37752 -39.91184 -37.22241 -35.64418 -34.92208 -34.46197 -33.40163 -32.06998 -30.70081 -30.16868 -29.32333 -27.77347 -26.83537 -25.12846 -23.79244 -23.50004 -22.36061 -21.94657 -21.41807 -20.23725 -19.07910 -18.81807 -18.73541 -17.05549 -16.97557 -16.81753 -16.61259 -16.10808 -15.91958 -15.62800 -15.44462 -14.98142 -14.82163 -14.53864 -14.41756 -14.19090 -14.08913 -13.66718 -13.61807 -13.41314 -13.37027 -13.29412 -13.17667 -12.93427 -12.82350 -12.73034 -12.63892 -12.44652 -12.37658 -11.97030 -11.86397 -11.74904 -11.69471 -11.38225 -10.98750 -10.80782 -10.78420 -10.68145 -10.58665 -10.44339 -9.98936 -8.86276 -7.82258 -5.16551 -0.70035 -0.12148 1.46127 1.46433 1.56681 1.71857 2.03417 2.50412 2.60292 2.79365 2.90423 3.24763 3.36183 3.54473 3.58538 3.65842 3.72344 3.83597 3.85904 4.06898 4.16035 4.34534 4.38416 4.48261 4.50723 4.62126 4.65159 4.66308 4.70322 4.72245 4.77157 4.81631 4.87961 4.90720 4.95152 5.03570 5.11738 5.12992 5.17617 5.22306 5.29439 5.35138 5.39734 5.50675 5.55371 5.58102 5.77671 5.78482 5.84674 6.20435 6.41116 6.88833 7.07883 7.11527 7.79052 8.45803 9.28174 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.002829 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.125097 B = 9895.195649 C =11373.998752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.330 3.670 3 N -0.542 5.542 4 C 0.192 3.808 5 C -0.264 4.264 6 C 0.575 3.425 7 O -0.549 6.549 8 N -0.708 5.708 9 C 0.157 3.843 10 H 0.097 0.903 11 C -0.117 4.117 12 C -0.092 4.092 13 C -0.105 4.105 14 H 0.070 0.930 15 C 0.198 3.802 16 N -0.633 5.633 17 C -0.235 4.235 18 H 0.082 0.918 19 C -0.070 4.070 20 N -0.951 5.951 21 Si 0.974 3.026 22 H -0.265 1.265 23 H -0.294 1.294 24 H -0.295 1.295 25 C 0.136 3.864 26 C -0.090 4.090 27 H 0.071 0.929 28 C -0.101 4.101 29 C 0.227 3.773 30 C -0.104 4.104 31 N -0.537 5.537 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.188 0.812 36 H 0.404 0.596 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.001 0.999 42 H 0.005 0.995 43 H 0.244 0.756 44 H 0.029 0.971 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.086 0.914 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 -19.729 -7.820 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 N -0.257 5.257 4 C 0.025 3.975 5 C -0.272 4.272 6 C 0.361 3.639 7 O -0.429 6.429 8 N -0.360 5.360 9 C 0.054 3.946 10 H 0.115 0.885 11 C -0.156 4.156 12 C -0.130 4.130 13 C -0.125 4.125 14 H 0.088 0.912 15 C 0.073 3.927 16 N -0.360 5.360 17 C -0.364 4.364 18 H 0.100 0.900 19 C -0.262 4.262 20 N -0.601 5.601 21 Si 0.803 3.197 22 H -0.189 1.189 23 H -0.221 1.221 24 H -0.222 1.222 25 C 0.012 3.988 26 C -0.109 4.109 27 H 0.089 0.911 28 C -0.139 4.139 29 C 0.081 3.919 30 C -0.160 4.160 31 N -0.253 5.253 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.205 0.795 36 H 0.242 0.758 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.019 0.981 42 H 0.024 0.976 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.105 0.895 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.378 -20.290 -7.641 23.622 hybrid contribution 0.708 2.071 0.640 2.280 sum -8.669 -18.219 -7.001 21.356 Atomic orbital electron populations 1.20791 0.82899 1.05398 1.05388 1.24258 1.00051 0.83016 0.86205 1.68406 1.10046 1.30531 1.16755 1.23822 0.89756 0.98325 0.85627 1.21589 0.95984 0.96594 1.12994 1.17708 0.85832 0.84112 0.76234 1.90720 1.69826 1.31483 1.50880 1.46147 1.08070 1.08727 1.73089 1.20936 0.78199 0.99703 0.95782 0.88477 1.21860 1.02172 0.96338 0.95202 1.21155 0.99908 0.93608 0.98348 1.21966 0.99674 0.94006 0.96812 0.91200 1.20506 0.96882 0.87644 0.87636 1.45451 1.86145 1.02354 1.02005 1.19501 1.41347 0.82576 0.92980 0.90018 1.25601 1.03199 1.02245 0.95191 1.70203 1.58521 1.34651 0.96741 0.85068 0.76581 0.80316 0.77749 1.18924 1.22115 1.22239 1.21510 0.97939 0.89576 0.89791 1.21928 0.99315 0.93945 0.95747 0.91082 1.21462 1.02642 0.90985 0.98828 1.22327 0.89087 0.96404 0.84092 1.21043 1.00210 0.90046 1.04734 1.68349 1.09218 1.30438 1.17280 0.87639 0.88250 0.88536 0.79524 0.75809 0.89815 0.92029 0.92470 0.92761 0.98076 0.97627 0.94699 0.95285 0.93644 0.89322 0.88931 0.88991 0.89476 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 10.31 71.24 0.73 -0.38 16 2 C 0.33 6.90 7.64 138.71 1.06 7.96 16 3 N -0.54 -12.34 10.32 -186.79 -1.93 -14.27 16 4 C 0.19 4.02 10.80 85.07 0.92 4.93 16 5 C -0.26 -5.76 5.91 -19.91 -0.12 -5.88 16 6 C 0.57 12.77 7.67 86.78 0.67 13.43 16 7 O -0.55 -14.14 13.17 -3.90 -0.05 -14.19 16 8 N -0.71 -13.89 4.61 -446.27 -2.06 -15.94 16 9 C 0.16 3.08 2.69 44.82 0.12 3.21 16 10 H 0.10 1.86 7.52 -2.39 -0.02 1.84 16 11 C -0.12 -2.57 5.42 30.72 0.17 -2.41 16 12 C -0.09 -2.57 5.59 30.36 0.17 -2.40 16 13 C -0.11 -3.52 2.29 -10.63 -0.02 -3.54 16 14 H 0.07 2.28 7.93 -2.38 -0.02 2.26 16 15 C 0.20 9.51 5.08 85.82 0.44 9.94 16 16 N -0.63 -31.53 3.45 -693.07 -2.39 -33.92 16 17 C -0.23 -13.00 10.30 84.03 0.87 -12.14 16 18 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 19 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 20 N -0.95 -57.49 10.36 21.65 0.22 -57.27 16 21 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 25 C 0.14 5.04 6.90 85.98 0.59 5.63 16 26 C -0.09 -2.56 2.42 -10.33 -0.02 -2.58 16 27 H 0.07 2.00 6.24 -2.39 -0.01 1.99 16 28 C -0.10 -2.00 5.30 30.12 0.16 -1.84 16 29 C 0.23 5.05 6.86 42.92 0.29 5.34 16 30 C -0.10 -1.92 8.99 71.24 0.64 -1.28 16 31 N -0.54 -11.98 10.26 -175.02 -1.79 -13.77 16 32 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.19 3.11 6.58 -2.91 -0.02 3.09 16 36 H 0.40 7.32 4.98 -92.71 -0.46 6.86 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.56 7.90 -2.39 -0.02 1.54 16 41 H 0.00 0.05 7.61 -2.39 -0.02 0.04 16 42 H 0.01 0.30 7.30 -2.39 -0.02 0.29 16 43 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.09 1.72 7.98 -2.39 -0.02 1.70 16 48 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 49 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 50 H 0.10 2.02 5.97 -2.39 -0.01 2.01 16 Total: -1.00 -71.54 388.39 1.65 -69.89 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.49 Total: 17.07 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 7.12 Total: 14.50 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -7.94 Total: -135.17 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.05 Total: -14.19 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.54 1.65 -69.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980195053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.551 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds