Wall clock time and date at job start Wed Apr 1 2020 03:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31889 * 118.94904 * 2 1 4 4 C 1.32134 * 120.96427 * 180.02562 * 3 2 1 5 5 C 1.39969 * 118.92235 * 0.02562 * 4 3 2 6 6 C 1.47833 * 120.93695 * 180.02562 * 5 4 3 7 7 O 1.21554 * 120.00129 * 173.93338 * 6 5 4 8 8 N 1.34775 * 120.00006 * 353.93098 * 6 5 4 9 9 C 1.46505 * 120.00078 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.02682 * 36.04134 * 9 8 6 11 11 C 1.52523 * 108.98538 * 277.12113 * 9 8 6 12 12 C 1.53819 * 111.70386 * 185.43233 * 11 9 8 13 13 C 1.51626 * 107.02279 * 57.53706 * 12 11 9 14 14 H 1.08997 * 110.50556 * 55.20497 * 13 12 11 15 15 C 1.53056 * 116.67242 * 183.74936 * 13 12 11 16 16 N 1.48659 * 103.44496 * 155.88072 * 15 13 12 17 17 C 1.36938 * 125.78567 * 155.58738 * 16 15 13 18 18 H 1.07996 * 120.00077 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99829 * 0.02562 * 17 16 15 20 20 N 1.31613 * 120.00052 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99728 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47088 * 60.00623 * 21 19 17 23 23 H 1.48503 * 109.47197 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47530 * 300.00220 * 21 19 17 25 25 C 1.48241 * 108.43205 * 335.62036 * 16 15 13 26 26 C 1.52336 * 105.86492 * 356.81429 * 25 16 15 27 27 H 1.08998 * 110.24036 * 272.18197 * 26 25 16 28 28 C 1.51441 * 117.45127 * 145.31743 * 26 25 16 29 29 C 1.39926 * 118.12618 * 0.27361 * 5 4 3 30 30 C 1.50702 * 120.54102 * 179.72682 * 29 5 4 31 31 N 1.31849 * 118.95430 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47168 * 89.99727 * 1 2 3 33 33 H 1.09001 * 109.46487 * 209.99956 * 1 2 3 34 34 H 1.08998 * 109.47353 * 329.99311 * 1 2 3 35 35 H 1.07997 * 120.53649 * 179.97438 * 4 3 2 36 36 H 0.97001 * 120.00615 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.03123 * 306.00287 * 11 9 8 38 38 H 1.08995 * 109.03559 * 64.86335 * 11 9 8 39 39 H 1.08999 * 109.94381 * 176.91449 * 12 11 9 40 40 H 1.08993 * 109.94305 * 298.15641 * 12 11 9 41 41 H 1.09002 * 110.62947 * 274.36884 * 15 13 12 42 42 H 1.09005 * 110.63118 * 37.38788 * 15 13 12 43 43 H 0.97001 * 120.00041 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.17510 * 237.71981 * 25 16 15 45 45 H 1.09000 * 110.17074 * 115.91317 * 25 16 15 46 46 H 1.08995 * 109.93865 * 300.60573 * 28 26 25 47 47 H 1.08999 * 109.93847 * 61.84444 * 28 26 25 48 48 H 1.08999 * 109.47136 * 83.67068 * 30 29 5 49 49 H 1.08996 * 109.46962 * 203.66869 * 30 29 5 50 50 H 1.08998 * 109.46609 * 323.67377 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2006 -0.0005 5 6 4.1855 0.0000 -0.0016 6 6 5.6638 0.0000 -0.0016 7 8 6.2716 -1.0469 0.1087 8 7 6.3377 1.1608 -0.1240 9 6 7.8027 1.1609 -0.1235 10 1 8.1583 0.2686 -0.6387 11 6 8.2984 1.1335 1.3187 12 6 9.8288 1.2674 1.3968 13 6 10.1967 2.5649 0.7040 14 1 9.6535 3.4007 1.1450 15 6 11.6899 2.8759 0.5758 16 7 11.7528 3.7938 -0.5918 17 6 12.7401 4.7103 -0.8376 18 1 12.6920 5.3327 -1.7189 19 6 13.8029 4.8393 0.0460 20 7 13.8619 4.0805 1.1197 21 14 15.1501 6.0890 -0.2897 22 1 14.5601 7.4508 -0.3424 23 1 16.1622 6.0293 0.7954 24 1 15.7993 5.7802 -1.5890 25 6 10.5651 3.5495 -1.4446 26 6 9.8172 2.3921 -0.7953 27 1 10.1980 1.4410 -1.1672 28 6 8.3048 2.4070 -0.8729 29 6 3.4662 -1.2002 -0.0080 30 6 4.1858 -2.5243 -0.0157 31 7 2.1453 -1.1537 0.0005 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3632 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5139 35 1 3.9816 2.1495 -0.0009 36 1 5.8527 1.9963 -0.2117 37 1 7.8410 1.9567 1.8675 38 1 8.0001 0.1917 1.7793 39 1 10.1464 1.2994 2.4390 40 1 10.3019 0.4273 0.8886 41 1 12.0574 3.3717 1.4743 42 1 12.2564 1.9655 0.3796 43 1 14.6047 4.1704 1.7370 44 1 10.8761 3.2773 -2.4532 45 1 9.9332 4.4372 -1.4722 46 1 7.9171 3.3080 -0.3976 47 1 7.9857 2.3681 -1.9144 48 1 4.4592 -2.7951 1.0041 49 1 3.5321 -3.2906 -0.4322 50 1 5.0864 -2.4447 -0.6244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980195055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:53 Heat of formation + Delta-G solvation = 11.215248 kcal Electronic energy + Delta-G solvation = -29974.242571 eV Core-core repulsion = 26000.912262 eV Total energy + Delta-G solvation = -3973.330310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.48155 -41.18712 -40.03014 -37.21523 -35.69087 -35.07453 -34.52012 -33.48258 -32.05813 -30.65314 -30.17139 -29.33354 -27.68887 -26.72309 -25.07660 -23.80254 -23.46158 -22.40154 -21.65681 -21.35921 -20.79758 -19.08539 -18.84005 -18.70214 -17.03201 -16.92330 -16.86621 -16.68244 -16.04699 -15.80221 -15.59938 -15.58669 -15.20071 -14.86378 -14.64494 -14.22073 -14.10728 -14.08500 -13.59576 -13.53387 -13.45262 -13.37742 -13.28767 -13.18279 -13.03981 -12.89060 -12.72469 -12.71423 -12.62902 -12.11244 -11.95299 -11.73778 -11.69904 -11.68014 -11.45399 -11.17715 -10.87463 -10.75165 -10.66525 -10.57819 -10.43316 -10.02855 -8.85976 -7.74676 -5.18288 -0.68982 -0.10210 1.46610 1.49815 1.56119 1.71146 1.94489 2.50992 2.61284 2.80076 2.91851 3.26718 3.34826 3.53861 3.58639 3.67302 3.70236 3.78318 3.99588 4.08350 4.13051 4.35316 4.38560 4.47055 4.49240 4.58435 4.63830 4.65941 4.69990 4.71343 4.74274 4.80443 4.82029 4.91442 4.98211 5.03268 5.07320 5.12045 5.19933 5.23300 5.29291 5.35436 5.40261 5.47280 5.50209 5.58860 5.77107 5.79638 5.86377 6.31674 6.43757 6.90122 7.10379 7.11419 7.78968 8.45618 9.27350 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.029830 B = 0.001961 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.431541 B =14276.409738 C =14740.591603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.331 3.669 3 N -0.539 5.539 4 C 0.198 3.802 5 C -0.264 4.264 6 C 0.572 3.428 7 O -0.554 6.554 8 N -0.704 5.704 9 C 0.160 3.840 10 H 0.074 0.926 11 C -0.115 4.115 12 C -0.093 4.093 13 C -0.102 4.102 14 H 0.072 0.928 15 C 0.166 3.834 16 N -0.633 5.633 17 C -0.236 4.236 18 H 0.080 0.920 19 C -0.071 4.071 20 N -0.950 5.950 21 Si 0.979 3.021 22 H -0.276 1.276 23 H -0.295 1.295 24 H -0.280 1.280 25 C 0.139 3.861 26 C -0.090 4.090 27 H 0.065 0.935 28 C -0.094 4.094 29 C 0.226 3.774 30 C -0.107 4.107 31 N -0.542 5.542 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.205 0.795 36 H 0.414 0.586 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.067 0.933 42 H -0.017 1.017 43 H 0.245 0.755 44 H 0.023 0.977 45 H 0.034 0.966 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.486 -8.263 -1.870 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 N -0.254 5.254 4 C 0.031 3.969 5 C -0.272 4.272 6 C 0.359 3.641 7 O -0.433 6.433 8 N -0.355 5.355 9 C 0.055 3.945 10 H 0.092 0.908 11 C -0.153 4.153 12 C -0.132 4.132 13 C -0.122 4.122 14 H 0.090 0.910 15 C 0.041 3.959 16 N -0.360 5.360 17 C -0.366 4.366 18 H 0.098 0.902 19 C -0.263 4.263 20 N -0.600 5.600 21 Si 0.807 3.193 22 H -0.202 1.202 23 H -0.221 1.221 24 H -0.206 1.206 25 C 0.015 3.985 26 C -0.110 4.110 27 H 0.083 0.917 28 C -0.133 4.133 29 C 0.080 3.920 30 C -0.163 4.163 31 N -0.258 5.258 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.221 0.779 36 H 0.251 0.749 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.001 0.999 43 H 0.055 0.945 44 H 0.041 0.959 45 H 0.052 0.948 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.104 0.896 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -27.887 -8.926 -1.730 29.331 hybrid contribution 2.163 0.905 -0.060 2.346 sum -25.723 -8.021 -1.789 27.004 Atomic orbital electron populations 1.20796 0.82954 1.05458 1.05348 1.24246 1.00028 0.83066 0.86093 1.68426 1.10069 1.30127 1.16783 1.23990 0.89535 0.98361 0.85058 1.21527 0.95439 0.96898 1.13287 1.17828 0.86071 0.84069 0.76178 1.90757 1.70030 1.31912 1.50619 1.45837 1.07161 1.09081 1.73451 1.20904 0.78294 0.99247 0.96023 0.90757 1.21791 0.94824 1.02312 0.96395 1.21190 0.95442 0.96050 1.00501 1.22177 0.96467 0.97773 0.95750 0.91009 1.21387 0.91963 0.90713 0.91791 1.45479 1.23637 1.42072 1.24768 1.19435 0.99693 1.11544 1.05892 0.90205 1.25626 1.01187 1.02007 0.97509 1.70073 1.32384 1.43078 1.14436 0.85141 0.78549 0.78858 0.76717 1.20158 1.22086 1.20647 1.21138 0.88115 0.96039 0.93200 1.21598 0.95484 0.97879 0.96002 0.91702 1.21450 0.93013 0.97406 1.01389 1.22247 0.89147 0.96405 0.84212 1.21032 1.00152 0.90533 1.04621 1.68344 1.09184 1.30810 1.17429 0.87754 0.88547 0.88141 0.77867 0.74865 0.90829 0.92100 0.91715 0.92453 0.91461 0.99865 0.94489 0.95874 0.94804 0.89560 0.89463 0.89092 0.89638 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.31 71.24 0.73 -0.07 16 2 C 0.33 5.59 7.64 138.71 1.06 6.65 16 3 N -0.54 -9.06 10.32 -186.79 -1.93 -10.99 16 4 C 0.20 2.82 10.80 85.07 0.92 3.73 16 5 C -0.26 -4.75 5.91 -19.91 -0.12 -4.87 16 6 C 0.57 11.44 7.65 86.78 0.66 12.11 16 7 O -0.55 -14.52 13.14 -3.89 -0.05 -14.57 16 8 N -0.70 -11.14 5.01 -444.82 -2.23 -13.37 16 9 C 0.16 3.30 2.42 45.12 0.11 3.41 16 10 H 0.07 1.82 7.58 -2.39 -0.02 1.80 16 11 C -0.11 -2.64 5.34 30.71 0.16 -2.48 16 12 C -0.09 -2.73 5.71 30.42 0.17 -2.55 16 13 C -0.10 -3.61 2.50 -10.32 -0.03 -3.63 16 14 H 0.07 2.52 8.01 -2.39 -0.02 2.50 16 15 C 0.17 8.16 5.53 85.98 0.48 8.64 16 16 N -0.63 -32.64 3.45 -693.06 -2.39 -35.03 16 17 C -0.24 -13.35 10.30 84.03 0.87 -12.48 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 20 N -0.95 -57.24 10.11 21.65 0.22 -57.02 16 21 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 C 0.14 5.52 6.98 85.82 0.60 6.12 16 26 C -0.09 -2.82 2.31 -10.62 -0.02 -2.84 16 27 H 0.06 2.12 7.92 -2.39 -0.02 2.10 16 28 C -0.09 -1.98 5.15 30.37 0.16 -1.82 16 29 C 0.23 4.52 6.87 42.92 0.29 4.81 16 30 C -0.11 -1.94 8.99 71.24 0.64 -1.30 16 31 N -0.54 -10.68 10.26 -175.02 -1.79 -12.48 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.20 1.30 6.58 -2.91 -0.02 1.28 16 36 H 0.41 3.85 6.76 -92.71 -0.63 3.23 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.48 8.07 -2.39 -0.02 1.46 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.75 7.98 -2.39 -0.02 1.73 16 41 H 0.07 3.81 5.93 -2.39 -0.01 3.79 16 42 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 43 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 46 H 0.09 1.60 8.03 -2.39 -0.02 1.58 16 47 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.10 2.00 5.97 -2.39 -0.01 1.98 16 Total: -1.00 -73.38 391.50 1.33 -72.05 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.33 Total: 13.58 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 7.15 Total: 9.83 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -8.12 Total: -128.90 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.05 Total: -14.57 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.38 1.33 -72.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980195055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.266 kcal (2) G-P(sol) polarization free energy of solvation -73.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds