Wall clock time and date at job start Wed Apr 1 2020 04:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32133 * 119.89936 * 2 1 4 4 C 1.32087 * 120.06941 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.06091 * 180.02562 * 4 3 2 6 6 C 1.39436 * 119.87227 * 359.97438 * 4 3 2 7 7 C 1.48155 * 120.09494 * 180.02562 * 6 4 3 8 8 O 1.21513 * 120.00025 * 354.21567 * 7 6 4 9 9 N 1.34778 * 119.99713 * 174.22229 * 7 6 4 10 10 C 1.46497 * 119.99545 * 180.02562 * 9 7 6 11 11 C 1.53587 * 112.24232 * 298.97950 * 10 9 7 12 12 C 1.54226 * 106.71366 * 238.81484 * 11 10 9 13 13 C 1.54825 * 104.12327 * 335.10440 * 12 11 10 14 14 C 1.54779 * 103.24163 * 37.76335 * 13 12 11 15 15 H 1.08995 * 112.62011 * 85.35896 * 14 13 12 16 16 N 1.46980 * 108.68711 * 209.82575 * 14 13 12 17 17 C 1.36939 * 125.57796 * 294.15112 * 16 14 13 18 18 H 1.08000 * 120.00216 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00198 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99627 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00167 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47315 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47211 * 120.00259 * 21 19 17 24 24 H 1.48500 * 109.47255 * 240.00221 * 21 19 17 25 25 C 1.47369 * 108.84348 * 114.13394 * 16 14 13 26 26 C 1.54920 * 112.33541 * 62.35450 * 10 9 7 27 27 N 1.32996 * 119.80807 * 0.28297 * 6 4 3 28 28 C 1.31800 * 119.92485 * 359.44035 * 27 6 4 29 29 C 1.50703 * 119.93777 * 180.25993 * 28 27 6 30 30 H 1.09007 * 109.46940 * 90.00745 * 1 2 3 31 31 H 1.09005 * 109.47372 * 210.00152 * 1 2 3 32 32 H 1.09000 * 109.47460 * 330.00418 * 1 2 3 33 33 H 1.09003 * 109.47087 * 263.26419 * 5 4 3 34 34 H 1.08994 * 109.47354 * 23.26400 * 5 4 3 35 35 H 1.09000 * 109.47202 * 143.26530 * 5 4 3 36 36 H 0.96996 * 120.00313 * 359.97438 * 9 7 6 37 37 H 1.08993 * 110.01585 * 358.14184 * 11 10 9 38 38 H 1.08997 * 110.01672 * 119.49101 * 11 10 9 39 39 H 1.08996 * 110.49190 * 93.74323 * 12 11 10 40 40 H 1.09005 * 110.49038 * 216.40508 * 12 11 10 41 41 H 1.08994 * 110.63504 * 279.33157 * 13 12 11 42 42 H 1.09003 * 110.81972 * 156.27432 * 13 12 11 43 43 H 0.97003 * 119.99486 * 180.02562 * 20 19 17 44 44 H 1.08997 * 110.36802 * 94.13794 * 25 16 14 45 45 H 1.08997 * 110.37302 * 216.35546 * 25 16 14 46 46 H 1.09001 * 110.96776 * 204.88586 * 26 10 9 47 47 H 1.08997 * 110.96279 * 328.64426 * 26 10 9 48 48 H 1.09006 * 109.46827 * 270.30073 * 29 28 27 49 49 H 1.08998 * 109.47230 * 30.29494 * 29 28 27 50 50 H 1.08998 * 109.47262 * 150.30450 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2375 2.4559 0.0011 6 6 4.1846 -0.0577 0.0016 7 6 5.6661 -0.0590 0.0027 8 8 6.2748 0.9874 -0.1033 9 7 6.3388 -1.2209 0.1213 10 6 7.8038 -1.2221 0.1230 11 6 8.3871 -0.6629 -1.1831 12 6 9.2627 -1.7775 -1.7909 13 6 9.6696 -2.6441 -0.5741 14 6 8.3939 -2.6457 0.3024 15 1 7.6849 -3.4199 0.0094 16 7 8.7911 -2.7738 1.7117 17 6 9.3926 -3.8681 2.2737 18 1 9.6133 -4.7340 1.6671 19 6 9.7187 -3.8646 3.6230 20 7 9.4492 -2.8095 4.3623 21 14 10.5398 -5.3571 4.3893 22 1 10.7336 -6.4024 3.3525 23 1 11.8585 -4.9643 4.9481 24 1 9.6807 -5.8910 5.4766 25 6 8.4365 -1.5316 2.4210 26 6 8.3918 -0.4331 1.3195 27 7 3.5166 -1.2077 -0.0036 28 6 2.1987 -1.2026 0.0014 29 6 1.4415 -2.5056 0.0015 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 4.5235 2.7111 -1.0193 34 1 3.6000 3.2413 0.4069 35 1 5.1324 2.3604 0.6161 36 1 5.8530 -2.0561 0.2062 37 1 7.5820 -0.4042 -1.8706 38 1 8.9955 0.2169 -0.9734 39 1 8.6880 -2.3678 -2.5045 40 1 10.1449 -1.3517 -2.2692 41 1 10.5031 -2.1886 -0.0396 42 1 9.9224 -3.6572 -0.8872 43 1 9.6774 -2.8070 5.3051 44 1 7.4568 -1.6284 2.8888 45 1 9.1918 -1.2934 3.1698 46 1 9.3947 -0.0710 1.0929 47 1 7.7364 0.3902 1.6035 48 1 1.2597 -2.8202 -1.0263 49 1 2.0281 -3.2667 0.5160 50 1 0.4890 -2.3723 0.5145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991749957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:43 Heat of formation + Delta-G solvation = 37.630697 kcal Electronic energy + Delta-G solvation = -31390.975787 eV Core-core repulsion = 27418.790937 eV Total energy + Delta-G solvation = -3972.184850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.62510 -40.03183 -38.12447 -35.26526 -34.47512 -34.23150 -33.36975 -31.41537 -30.32132 -29.89172 -29.00970 -26.75963 -26.65572 -25.59501 -23.86320 -23.75831 -22.39458 -21.23239 -20.00276 -19.79510 -18.85949 -18.26697 -17.26909 -16.94822 -15.98271 -15.60385 -15.35361 -14.95179 -14.86866 -14.61130 -14.05005 -13.77762 -13.59979 -13.48703 -13.39525 -13.26327 -13.05831 -12.85605 -12.78887 -12.39106 -12.32838 -12.17331 -12.07649 -11.81359 -11.73713 -11.61078 -11.17589 -10.97279 -10.94580 -10.84602 -10.66193 -10.52289 -10.15174 -10.05192 -9.96085 -9.83068 -9.66877 -9.55690 -9.10445 -9.06526 -8.65178 -8.51695 -6.84640 -5.64124 -3.07176 0.27358 0.86961 2.75649 3.17405 3.39303 3.44853 3.47330 3.61885 3.76204 3.79873 4.17457 4.43845 4.48153 4.71664 4.82371 4.97588 5.02358 5.11639 5.16393 5.19011 5.30967 5.32927 5.43937 5.52380 5.55174 5.64949 5.66316 5.70384 5.80140 5.83218 5.86620 5.99200 6.03269 6.09342 6.14645 6.22380 6.35625 6.40444 6.42775 6.54637 6.59992 6.76638 6.78672 6.97642 7.02189 7.13085 7.49347 7.55443 7.65475 7.81179 7.88925 8.36799 8.38894 9.22110 9.83003 10.47176 11.38531 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.003248 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.678367 B = 8618.040763 C = 9514.355959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.103 3.897 3 N -0.444 5.444 4 C 0.137 3.863 5 C -0.104 4.104 6 C 0.029 3.971 7 C 0.574 3.426 8 O -0.522 6.522 9 N -0.681 5.681 10 C 0.158 3.842 11 C -0.111 4.111 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.162 3.838 15 H 0.047 0.953 16 N -0.595 5.595 17 C -0.218 4.218 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.153 3.847 26 C -0.142 4.142 27 N -0.405 5.405 28 C 0.068 3.932 29 C -0.102 4.102 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.408 0.592 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.251 0.749 44 H 0.007 0.993 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.462 5.362 -11.531 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.040 4.040 3 N -0.160 5.160 4 C -0.003 4.003 5 C -0.162 4.162 6 C -0.113 4.113 7 C 0.358 3.642 8 O -0.399 6.399 9 N -0.330 5.330 10 C 0.072 3.928 11 C -0.150 4.150 12 C -0.163 4.163 13 C -0.168 4.168 14 C 0.054 3.946 15 H 0.065 0.935 16 N -0.319 5.319 17 C -0.347 4.347 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.568 5.568 21 Si 0.744 3.256 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.219 1.219 25 C 0.028 3.972 26 C -0.182 4.182 27 N -0.122 5.122 28 C -0.076 4.076 29 C -0.160 4.160 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.244 0.756 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.025 0.975 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.871 6.026 -11.370 19.666 hybrid contribution 0.001 -1.273 0.477 1.360 sum -14.870 4.753 -10.893 19.036 Atomic orbital electron populations 1.20829 0.87511 1.04271 1.03682 1.22389 0.98510 0.88978 0.94107 1.68299 1.07921 1.28799 1.10990 1.22356 0.89672 0.96754 0.91527 1.21050 1.00125 0.90434 1.04551 1.22097 0.96090 0.90050 1.03060 1.17507 0.84561 0.84561 0.77584 1.90720 1.68219 1.30790 1.50189 1.45778 1.07008 1.08960 1.71214 1.21759 0.77504 0.97575 0.95919 1.22282 0.98890 0.98259 0.95533 1.22373 0.98866 0.97083 0.97944 1.22935 0.99592 0.98976 0.95295 1.21800 0.93588 0.91768 0.87460 0.93517 1.44515 1.69633 1.15031 1.02753 1.19081 1.30630 0.92695 0.92270 0.90430 1.24783 1.01646 0.97941 0.96273 1.69814 1.52870 1.27938 1.06229 0.86021 0.78773 0.81744 0.79089 1.20551 1.21798 1.21870 1.22102 0.99687 0.82536 0.92856 1.23469 0.99710 0.98682 0.96291 1.68174 1.08550 1.28712 1.06795 1.22105 0.90103 0.96908 0.98452 1.20776 0.99315 0.92334 1.03580 0.89636 0.89601 0.89959 0.89619 0.91199 0.87184 0.75577 0.92358 0.90974 0.92376 0.92169 0.90644 0.92304 0.93832 0.97497 0.87353 0.91226 0.91370 0.89898 0.89774 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 9.78 36.01 0.35 -0.35 16 2 C 0.10 1.14 6.79 -82.28 -0.56 0.58 16 3 N -0.44 -5.88 10.34 -5.24 -0.05 -5.93 16 4 C 0.14 1.95 6.82 -82.04 -0.56 1.39 16 5 C -0.10 -1.31 8.88 36.01 0.32 -1.00 16 6 C 0.03 0.44 6.75 -82.84 -0.56 -0.12 16 7 C 0.57 9.58 6.91 -12.19 -0.08 9.50 16 8 O -0.52 -9.16 11.16 5.35 0.06 -9.10 16 9 N -0.68 -11.63 5.22 -46.18 -0.24 -11.87 16 10 C 0.16 2.89 0.74 -129.37 -0.10 2.79 16 11 C -0.11 -1.80 5.26 -25.78 -0.14 -1.93 16 12 C -0.12 -1.87 6.84 -25.13 -0.17 -2.04 16 13 C -0.13 -2.31 6.22 -24.83 -0.15 -2.46 16 14 C 0.16 3.26 3.67 -65.60 -0.24 3.02 16 15 H 0.05 0.94 7.96 -51.93 -0.41 0.53 16 16 N -0.60 -14.70 3.03 -160.65 -0.49 -15.18 16 17 C -0.22 -5.90 10.01 -15.06 -0.15 -6.05 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -26.65 10.07 55.49 0.56 -26.09 16 21 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.15 3.76 5.92 -2.17 -0.01 3.74 16 26 C -0.14 -2.90 5.81 -24.32 -0.14 -3.04 16 27 N -0.41 -5.79 9.65 -5.88 -0.06 -5.85 16 28 C 0.07 0.78 6.79 -82.42 -0.56 0.23 16 29 C -0.10 -0.78 9.78 36.01 0.35 -0.43 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.39 5.94 -51.93 -0.31 0.08 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.11 1.55 5.84 -51.93 -0.30 1.24 16 36 H 0.41 6.83 7.85 -40.82 -0.32 6.51 16 37 H 0.06 0.93 7.49 -51.93 -0.39 0.54 16 38 H 0.07 1.18 7.36 -51.93 -0.38 0.80 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 45 H 0.11 3.00 5.82 -51.93 -0.30 2.70 16 46 H 0.07 1.40 7.61 -51.93 -0.40 1.00 16 47 H 0.07 1.39 6.65 -51.93 -0.35 1.04 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 0.42 5.94 -51.93 -0.31 0.12 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -31.12 386.95 -9.57 -40.69 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.66 Total: 7.20 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -2.50 Total: 3.43 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.28 Total: -64.92 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.06 Total: -9.10 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.12 -9.57 -40.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991749957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.322 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds