Wall clock time and date at job start Wed Apr 1 2020 04:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32133 * 119.89936 * 2 1 4 4 C 1.32087 * 120.06941 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.06091 * 180.02562 * 4 3 2 6 6 C 1.39436 * 119.87227 * 359.97438 * 4 3 2 7 7 C 1.48155 * 120.09494 * 180.02562 * 6 4 3 8 8 O 1.21513 * 120.00025 * 354.21567 * 7 6 4 9 9 N 1.34778 * 119.99713 * 174.22229 * 7 6 4 10 10 C 1.46497 * 119.99545 * 180.02562 * 9 7 6 11 11 C 1.53587 * 112.24232 * 298.97950 * 10 9 7 12 12 C 1.54226 * 106.71366 * 238.81484 * 11 10 9 13 13 C 1.54825 * 104.12327 * 335.10440 * 12 11 10 14 14 C 1.54779 * 103.24163 * 37.76335 * 13 12 11 15 15 H 1.08995 * 112.62011 * 85.35896 * 14 13 12 16 16 N 1.46980 * 108.68711 * 209.82575 * 14 13 12 17 17 C 1.36939 * 125.57796 * 294.15112 * 16 14 13 18 18 H 1.08000 * 120.00216 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00198 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99627 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00167 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47315 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47211 * 120.00259 * 21 19 17 24 24 H 1.48500 * 109.47255 * 240.00221 * 21 19 17 25 25 C 1.47369 * 108.84348 * 114.13394 * 16 14 13 26 26 C 1.54920 * 112.33541 * 62.35450 * 10 9 7 27 27 N 1.32996 * 119.80807 * 0.28297 * 6 4 3 28 28 C 1.31800 * 119.92485 * 359.44035 * 27 6 4 29 29 C 1.50703 * 119.93777 * 180.25993 * 28 27 6 30 30 H 1.09007 * 109.46940 * 90.00745 * 1 2 3 31 31 H 1.09005 * 109.47372 * 210.00152 * 1 2 3 32 32 H 1.09000 * 109.47460 * 330.00418 * 1 2 3 33 33 H 1.09003 * 109.47087 * 263.26419 * 5 4 3 34 34 H 1.08994 * 109.47354 * 23.26400 * 5 4 3 35 35 H 1.09000 * 109.47202 * 143.26530 * 5 4 3 36 36 H 0.96996 * 120.00313 * 359.97438 * 9 7 6 37 37 H 1.08993 * 110.01585 * 358.14184 * 11 10 9 38 38 H 1.08997 * 110.01672 * 119.49101 * 11 10 9 39 39 H 1.08996 * 110.49190 * 93.74323 * 12 11 10 40 40 H 1.09005 * 110.49038 * 216.40508 * 12 11 10 41 41 H 1.08994 * 110.63504 * 279.33157 * 13 12 11 42 42 H 1.09003 * 110.81972 * 156.27432 * 13 12 11 43 43 H 0.97003 * 119.99486 * 180.02562 * 20 19 17 44 44 H 1.08997 * 110.36802 * 94.13794 * 25 16 14 45 45 H 1.08997 * 110.37302 * 216.35546 * 25 16 14 46 46 H 1.09001 * 110.96776 * 204.88586 * 26 10 9 47 47 H 1.08997 * 110.96279 * 328.64426 * 26 10 9 48 48 H 1.09006 * 109.46827 * 270.30073 * 29 28 27 49 49 H 1.08998 * 109.47230 * 30.29494 * 29 28 27 50 50 H 1.08998 * 109.47262 * 150.30450 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2375 2.4559 0.0011 6 6 4.1846 -0.0577 0.0016 7 6 5.6661 -0.0590 0.0027 8 8 6.2748 0.9874 -0.1033 9 7 6.3388 -1.2209 0.1213 10 6 7.8038 -1.2221 0.1230 11 6 8.3871 -0.6629 -1.1831 12 6 9.2627 -1.7775 -1.7909 13 6 9.6696 -2.6441 -0.5741 14 6 8.3939 -2.6457 0.3024 15 1 7.6849 -3.4199 0.0094 16 7 8.7911 -2.7738 1.7117 17 6 9.3926 -3.8681 2.2737 18 1 9.6133 -4.7340 1.6671 19 6 9.7187 -3.8646 3.6230 20 7 9.4492 -2.8095 4.3623 21 14 10.5398 -5.3571 4.3893 22 1 10.7336 -6.4024 3.3525 23 1 11.8585 -4.9643 4.9481 24 1 9.6807 -5.8910 5.4766 25 6 8.4365 -1.5316 2.4210 26 6 8.3918 -0.4331 1.3195 27 7 3.5166 -1.2077 -0.0036 28 6 2.1987 -1.2026 0.0014 29 6 1.4415 -2.5056 0.0015 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 4.5235 2.7111 -1.0193 34 1 3.6000 3.2413 0.4069 35 1 5.1324 2.3604 0.6161 36 1 5.8530 -2.0561 0.2062 37 1 7.5820 -0.4042 -1.8706 38 1 8.9955 0.2169 -0.9734 39 1 8.6880 -2.3678 -2.5045 40 1 10.1449 -1.3517 -2.2692 41 1 10.5031 -2.1886 -0.0396 42 1 9.9224 -3.6572 -0.8872 43 1 9.6774 -2.8070 5.3051 44 1 7.4568 -1.6284 2.8888 45 1 9.1918 -1.2934 3.1698 46 1 9.3947 -0.0710 1.0929 47 1 7.7364 0.3902 1.6035 48 1 1.2597 -2.8202 -1.0263 49 1 2.0281 -3.2667 0.5160 50 1 0.4890 -2.3723 0.5145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991749957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:42 Heat of formation + Delta-G solvation = 17.646313 kcal Electronic energy + Delta-G solvation = -31391.842375 eV Core-core repulsion = 27418.790937 eV Total energy + Delta-G solvation = -3973.051438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.63804 -41.44662 -39.54114 -36.31743 -35.98453 -35.36030 -34.69679 -33.31097 -31.58508 -31.16305 -29.85927 -28.43465 -27.91606 -26.84779 -25.75160 -24.63692 -23.51160 -22.58212 -21.65821 -21.18996 -20.27711 -19.37808 -18.88375 -18.49342 -17.08417 -17.01000 -16.84228 -16.25735 -16.06996 -15.99423 -15.57615 -15.09036 -14.92238 -14.59600 -14.49212 -14.39001 -14.03493 -13.93140 -13.78755 -13.70543 -13.52309 -13.33757 -13.20410 -13.12361 -12.95450 -12.86158 -12.77700 -12.66704 -12.49073 -12.28564 -11.99696 -11.92081 -11.87343 -11.71622 -11.56304 -11.50026 -11.25458 -11.00636 -10.74105 -10.16836 -10.13936 -9.83998 -8.87643 -7.74379 -5.19499 -0.73046 -0.10091 1.47481 1.48000 1.58297 1.59064 1.92658 2.50083 2.56422 2.80156 2.90120 3.23249 3.33964 3.36288 3.58601 3.62783 3.81401 3.91840 3.94875 3.99354 4.16087 4.35211 4.38519 4.45936 4.53779 4.56665 4.63545 4.66062 4.70073 4.74949 4.78565 4.79622 4.85315 4.88078 4.94232 4.98292 5.06458 5.07988 5.15138 5.21423 5.26370 5.31292 5.46083 5.47819 5.50903 5.63625 5.64580 5.81842 6.06086 6.30137 6.38484 6.62884 7.06641 7.11330 7.79303 8.43560 9.27239 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.003248 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.678367 B = 8618.040763 C = 9514.355959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.109 3.891 3 N -0.458 5.458 4 C 0.125 3.875 5 C -0.097 4.097 6 C 0.000 4.000 7 C 0.574 3.426 8 O -0.536 6.536 9 N -0.684 5.684 10 C 0.168 3.832 11 C -0.104 4.104 12 C -0.109 4.109 13 C -0.122 4.122 14 C 0.153 3.847 15 H 0.051 0.949 16 N -0.611 5.611 17 C -0.223 4.223 18 H 0.086 0.914 19 C -0.070 4.070 20 N -0.952 5.952 21 Si 0.978 3.022 22 H -0.264 1.264 23 H -0.294 1.294 24 H -0.297 1.297 25 C 0.163 3.837 26 C -0.128 4.128 27 N -0.425 5.425 28 C 0.063 3.937 29 C -0.100 4.100 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.409 0.591 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.244 0.756 44 H -0.026 1.026 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.074 0.926 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.402 4.472 -13.755 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.034 4.034 3 N -0.174 5.174 4 C -0.013 4.013 5 C -0.154 4.154 6 C -0.140 4.140 7 C 0.359 3.641 8 O -0.414 6.414 9 N -0.333 5.333 10 C 0.081 3.919 11 C -0.143 4.143 12 C -0.147 4.147 13 C -0.162 4.162 14 C 0.047 3.953 15 H 0.069 0.931 16 N -0.335 5.335 17 C -0.352 4.352 18 H 0.103 0.897 19 C -0.262 4.262 20 N -0.602 5.602 21 Si 0.807 3.193 22 H -0.188 1.188 23 H -0.222 1.222 24 H -0.224 1.224 25 C 0.038 3.962 26 C -0.168 4.168 27 N -0.143 5.143 28 C -0.082 4.082 29 C -0.158 4.158 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.245 0.755 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.054 0.946 44 H -0.008 1.008 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.120 0.880 49 H 0.093 0.907 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.794 5.147 -13.642 22.240 hybrid contribution 0.417 -1.019 1.173 1.609 sum -16.376 4.129 -12.469 20.993 Atomic orbital electron populations 1.21040 0.83941 1.05743 1.05373 1.23207 1.00677 0.88169 0.91389 1.68393 1.07294 1.29937 1.11806 1.22492 0.90382 0.96740 0.91712 1.20955 0.99502 0.90480 1.04507 1.21835 0.95162 0.91025 1.05952 1.17760 0.85468 0.84030 0.76845 1.90703 1.68900 1.31043 1.50715 1.45736 1.06426 1.09341 1.71818 1.21611 0.78346 0.95898 0.96023 1.22222 0.99153 0.98633 0.94276 1.22316 0.99649 0.96016 0.96761 1.22785 0.97430 1.00012 0.95960 1.22050 0.94933 0.92964 0.85394 0.93122 1.44707 1.69536 1.14501 1.04731 1.19451 1.29758 0.93429 0.92564 0.89656 1.25607 1.02998 1.00635 0.96981 1.70072 1.54364 1.29818 1.05945 0.85000 0.77192 0.78952 0.78147 1.18783 1.22154 1.22402 1.21753 0.96592 0.84339 0.93528 1.23273 1.00107 0.97381 0.96020 1.68150 1.10119 1.28473 1.07524 1.22856 0.89395 0.98924 0.97040 1.20949 0.99867 0.89872 1.05077 0.87510 0.86869 0.89741 0.89132 0.89842 0.89032 0.75522 0.91706 0.91092 0.90360 0.89903 0.92803 0.91524 0.94624 1.00815 0.90769 0.90916 0.91682 0.87994 0.90747 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.78 71.24 0.70 -0.28 16 2 C 0.11 2.18 6.79 42.63 0.29 2.46 16 3 N -0.46 -11.61 10.34 -170.48 -1.76 -13.37 16 4 C 0.13 3.57 6.82 42.81 0.29 3.86 16 5 C -0.10 -2.48 8.88 71.24 0.63 -1.85 16 6 C 0.00 -0.01 6.75 41.89 0.28 0.27 16 7 C 0.57 19.57 6.91 86.88 0.60 20.17 16 8 O -0.54 -19.19 11.16 -3.76 -0.04 -19.23 16 9 N -0.68 -23.76 5.22 -418.31 -2.18 -25.94 16 10 C 0.17 6.13 0.74 5.19 0.00 6.14 16 11 C -0.10 -3.22 5.26 31.21 0.16 -3.06 16 12 C -0.11 -2.98 6.84 31.63 0.22 -2.77 16 13 C -0.12 -4.26 6.22 31.82 0.20 -4.06 16 14 C 0.15 6.17 3.67 46.24 0.17 6.34 16 15 H 0.05 2.02 7.96 -2.39 -0.02 2.00 16 16 N -0.61 -30.99 3.03 -662.16 -2.01 -32.99 16 17 C -0.22 -12.24 10.01 84.03 0.84 -11.40 16 18 H 0.09 4.45 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 20 N -0.95 -57.57 10.07 21.65 0.22 -57.35 16 21 Si 0.98 45.79 29.55 68.60 2.03 47.81 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 C 0.16 8.47 5.92 87.12 0.52 8.98 16 26 C -0.13 -5.42 5.81 32.16 0.19 -5.23 16 27 N -0.43 -12.03 9.65 -172.53 -1.67 -13.70 16 28 C 0.06 1.35 6.79 42.68 0.29 1.64 16 29 C -0.10 -1.23 9.78 71.24 0.70 -0.53 16 30 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.11 0.47 5.94 -2.38 -0.01 0.45 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.68 5.84 -2.39 -0.01 2.67 16 36 H 0.41 13.97 7.85 -92.71 -0.73 13.24 16 37 H 0.06 1.96 7.49 -2.39 -0.02 1.94 16 38 H 0.07 2.23 7.36 -2.39 -0.02 2.21 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.05 2.12 8.09 -2.39 -0.02 2.10 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 44 H -0.03 -1.49 8.14 -2.39 -0.02 -1.51 16 45 H 0.07 4.38 5.82 -2.39 -0.01 4.37 16 46 H 0.07 3.00 7.61 -2.39 -0.02 2.98 16 47 H 0.06 2.77 6.65 -2.39 -0.02 2.75 16 48 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.11 0.66 5.94 -2.39 -0.01 0.65 16 Total: -1.00 -70.91 386.95 1.37 -69.54 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.24 Total: 28.06 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 6.54 Total: 17.16 kcal Atomic # 7 Polarization: -135.95 SS G_CDS: -7.40 Total: -143.36 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.04 Total: -19.23 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -70.91 1.37 -69.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991749957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.189 kcal (2) G-P(sol) polarization free energy of solvation -70.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds