Wall clock time and date at job start Wed Apr 1 2020 04:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32138 * 119.89864 * 2 1 4 4 C 1.32080 * 120.06699 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.06053 * 179.97438 * 4 3 2 6 6 C 1.39440 * 119.87459 * 0.02562 * 4 3 2 7 7 C 1.48149 * 120.09638 * 180.02562 * 6 4 3 8 8 O 1.21519 * 120.00171 * 5.77900 * 7 6 4 9 9 N 1.34777 * 119.99746 * 185.78164 * 7 6 4 10 10 C 1.46506 * 119.99858 * 180.02562 * 9 7 6 11 11 C 1.51222 * 111.07404 * 78.35825 * 10 9 7 12 12 C 1.56593 * 104.17218 * 84.76188 * 11 10 9 13 13 C 1.56281 * 106.06886 * 6.57376 * 12 11 10 14 14 C 1.50510 * 101.75713 * 24.68212 * 13 12 11 15 15 H 1.09000 * 107.74437 * 66.77261 * 14 13 12 16 16 N 1.42702 * 128.16896 * 198.66415 * 14 13 12 17 17 C 1.36939 * 127.10605 * 331.70517 * 16 14 13 18 18 H 1.07997 * 119.99807 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99805 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00546 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99470 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47031 * 90.00378 * 21 19 17 23 23 H 1.48499 * 109.46652 * 209.99972 * 21 19 17 24 24 H 1.48494 * 109.47429 * 330.00104 * 21 19 17 25 25 C 1.49297 * 105.79141 * 151.73746 * 16 14 13 26 26 C 1.52142 * 111.09179 * 298.98489 * 10 9 7 27 27 N 1.33000 * 119.80779 * 359.74569 * 6 4 3 28 28 C 1.31809 * 119.92357 * 0.52479 * 27 6 4 29 29 C 1.50694 * 119.93443 * 179.72997 * 28 27 6 30 30 H 1.09000 * 109.47214 * 269.97556 * 1 2 3 31 31 H 1.08999 * 109.47135 * 29.97411 * 1 2 3 32 32 H 1.08997 * 109.46750 * 149.97480 * 1 2 3 33 33 H 1.08997 * 109.46974 * 96.71930 * 5 4 3 34 34 H 1.09001 * 109.47126 * 216.71482 * 5 4 3 35 35 H 1.09002 * 109.47311 * 336.71253 * 5 4 3 36 36 H 0.97000 * 120.00559 * 359.97438 * 9 7 6 37 37 H 1.09003 * 110.41374 * 202.67094 * 11 10 9 38 38 H 1.08994 * 110.41300 * 325.11567 * 11 10 9 39 39 H 1.08998 * 109.73415 * 247.60328 * 12 11 10 40 40 H 1.08999 * 110.50693 * 125.95571 * 12 11 10 41 41 H 1.08995 * 110.97091 * 266.56157 * 13 12 11 42 42 H 1.09004 * 110.96718 * 142.79949 * 13 12 11 43 43 H 0.96998 * 120.00610 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.04755 * 232.08190 * 25 16 14 45 45 H 1.08992 * 110.04886 * 110.60893 * 25 16 14 46 46 H 1.09000 * 111.14674 * 43.90976 * 26 10 9 47 47 H 1.08996 * 111.15096 * 168.13789 * 26 10 9 48 48 H 1.09000 * 109.47128 * 269.72624 * 29 28 27 49 49 H 1.08994 * 109.47664 * 29.72390 * 29 28 27 50 50 H 1.08998 * 109.47347 * 149.72874 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2376 2.4559 -0.0001 6 6 4.1846 -0.0577 0.0005 7 6 5.6661 -0.0591 0.0017 8 8 6.2746 0.9873 0.1086 9 7 6.3390 -1.2209 -0.1159 10 6 7.8040 -1.2224 -0.1142 11 6 8.3463 -1.0798 1.2902 12 6 8.3527 -2.5426 1.8491 13 6 7.9641 -3.4657 0.6494 14 6 8.3803 -2.6279 -0.5297 15 1 9.4670 -2.5452 -0.5113 16 7 7.9667 -2.7521 -1.8897 17 6 7.5640 -3.8938 -2.5298 18 1 7.5368 -4.8317 -1.9950 19 6 7.1909 -3.8456 -3.8660 20 7 7.2236 -2.7026 -4.5176 21 14 6.6423 -5.4032 -4.7392 22 1 5.1732 -5.5620 -4.5918 23 1 6.9880 -5.3105 -6.1804 24 1 7.3295 -6.5751 -4.1396 25 6 8.0643 -1.3804 -2.4710 26 6 8.3537 -0.4127 -1.2791 27 7 3.5166 -1.2077 0.0051 28 6 2.1986 -1.2026 -0.0008 29 6 1.4415 -2.5056 -0.0017 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 4.5225 2.7116 1.0205 34 1 5.1331 2.3599 -0.6140 35 1 3.6004 3.2411 -0.4071 36 1 5.8533 -2.0563 -0.2009 37 1 9.3630 -0.6875 1.2672 38 1 7.7010 -0.4314 1.8828 39 1 7.6167 -2.6347 2.6477 40 1 9.3435 -2.8054 2.2196 41 1 6.8907 -3.6546 0.6343 42 1 8.5228 -4.4011 0.6800 43 1 6.9625 -2.6688 -5.4512 44 1 7.1239 -1.1105 -2.9517 45 1 8.8794 -1.3379 -3.1934 46 1 7.8129 0.5266 -1.3950 47 1 9.4234 -0.2371 -1.1660 48 1 1.2593 -2.8192 -1.0296 49 1 2.0282 -3.2671 0.5118 50 1 0.4892 -2.3729 0.5118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991749959.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:46 Heat of formation + Delta-G solvation = 49.142266 kcal Electronic energy + Delta-G solvation = -32078.149449 eV Core-core repulsion = 28106.463778 eV Total energy + Delta-G solvation = -3971.685671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.47126 -40.30755 -38.09934 -35.07855 -34.41538 -34.29128 -32.96632 -31.68538 -30.17362 -29.92924 -28.88350 -26.94362 -26.41298 -25.55015 -24.04942 -23.62199 -22.29345 -20.90408 -20.44860 -19.61771 -18.85768 -18.10276 -17.24032 -16.47740 -15.82030 -15.68366 -15.22381 -14.74550 -14.64241 -14.43878 -14.31890 -13.92198 -13.68528 -13.49703 -13.30586 -13.15546 -12.95581 -12.72248 -12.59093 -12.32288 -12.21900 -12.17468 -12.03151 -11.95021 -11.54569 -11.39933 -11.35823 -11.00507 -10.91796 -10.83001 -10.79295 -10.47606 -10.28302 -10.00343 -9.97471 -9.71793 -9.69076 -9.33289 -8.93556 -8.86737 -8.66031 -8.41027 -6.85779 -5.74077 -3.08483 0.44277 1.04536 2.94172 3.37182 3.38552 3.42729 3.44601 3.80793 3.92070 3.99559 4.33103 4.45218 4.60398 4.63785 4.85699 5.09860 5.18089 5.20879 5.26781 5.27968 5.37052 5.44919 5.47535 5.48127 5.60708 5.68724 5.72251 5.77945 5.82282 5.84634 5.92556 5.94755 5.97975 6.13008 6.16685 6.25398 6.29818 6.35392 6.41571 6.47386 6.52443 6.69415 6.84146 6.90056 7.14708 7.22665 7.52006 7.61084 7.66767 7.78226 8.06177 8.20190 8.60646 9.13496 9.80330 10.49156 11.38220 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.004634 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.418258 B = 6040.828941 C = 7505.097767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.100 3.900 3 N -0.446 5.446 4 C 0.134 3.866 5 C -0.102 4.102 6 C 0.032 3.968 7 C 0.574 3.426 8 O -0.534 6.534 9 N -0.663 5.663 10 C 0.128 3.872 11 C -0.111 4.111 12 C -0.117 4.117 13 C -0.117 4.117 14 C 0.160 3.840 15 H 0.023 0.977 16 N -0.583 5.583 17 C -0.229 4.229 18 H 0.079 0.921 19 C -0.004 4.004 20 N -0.918 5.918 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.178 3.822 26 C -0.142 4.142 27 N -0.402 5.402 28 C 0.069 3.931 29 C -0.101 4.101 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.252 0.748 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.326 4.513 12.360 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.043 4.043 3 N -0.161 5.161 4 C -0.006 4.006 5 C -0.160 4.160 6 C -0.109 4.109 7 C 0.358 3.642 8 O -0.412 6.412 9 N -0.313 5.313 10 C 0.040 3.960 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.155 4.155 14 C 0.050 3.950 15 H 0.041 0.959 16 N -0.306 5.306 17 C -0.357 4.357 18 H 0.097 0.903 19 C -0.200 4.200 20 N -0.565 5.565 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.055 3.945 26 C -0.181 4.181 27 N -0.119 5.119 28 C -0.074 4.074 29 C -0.159 4.159 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.248 0.752 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.868 5.148 12.170 15.913 hybrid contribution -0.591 -1.296 -0.706 1.590 sum -9.459 3.851 11.463 15.353 Atomic orbital electron populations 1.20775 0.87620 1.04197 1.03487 1.22365 0.98411 0.89012 0.94477 1.68269 1.07962 1.28813 1.11086 1.22323 0.89663 0.96741 0.91895 1.21025 1.00119 0.90452 1.04380 1.22128 0.96247 0.89951 1.02592 1.17503 0.84528 0.84582 0.77634 1.90676 1.68251 1.30961 1.51316 1.45550 1.06740 1.08942 1.70031 1.21656 0.79028 1.01499 0.93816 1.22047 1.01057 0.96432 0.95460 1.22966 1.00830 0.94232 0.97454 1.21867 1.01250 0.98036 0.94392 1.20811 0.96328 0.91151 0.86711 0.95948 1.43652 1.77354 1.05366 1.04204 1.18998 1.37609 0.86072 0.93034 0.90325 1.24779 1.01612 0.96940 0.96706 1.69916 1.53452 1.23362 1.09774 0.86181 0.78399 0.82483 0.79065 1.21692 1.21730 1.20663 1.22004 1.00839 0.80789 0.90890 1.22842 0.99869 0.99516 0.95853 1.68209 1.08450 1.28691 1.06515 1.22111 0.90175 0.96820 0.98312 1.20734 0.99008 0.92345 1.03799 0.89795 0.90004 0.89781 0.89794 0.87218 0.91356 0.75178 0.90989 0.91549 0.92322 0.91814 0.91612 0.91642 0.93748 0.91910 0.94666 0.90440 0.91580 0.89724 0.89884 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.37 36.01 0.34 -0.50 16 2 C 0.10 1.28 6.79 -82.28 -0.56 0.72 16 3 N -0.45 -6.62 10.34 -5.24 -0.05 -6.67 16 4 C 0.13 2.13 6.82 -82.04 -0.56 1.57 16 5 C -0.10 -1.43 8.88 36.01 0.32 -1.11 16 6 C 0.03 0.56 6.75 -82.84 -0.56 0.00 16 7 C 0.57 10.57 7.14 -12.19 -0.09 10.48 16 8 O -0.53 -10.05 11.45 5.35 0.06 -9.98 16 9 N -0.66 -12.41 4.47 -47.41 -0.21 -12.63 16 10 C 0.13 2.35 0.42 -130.70 -0.06 2.30 16 11 C -0.11 -1.72 6.24 -25.69 -0.16 -1.88 16 12 C -0.12 -1.64 6.95 -23.03 -0.16 -1.80 16 13 C -0.12 -1.96 6.46 -26.21 -0.17 -2.13 16 14 C 0.16 3.22 2.65 -68.73 -0.18 3.04 16 15 H 0.02 0.48 7.98 -51.93 -0.41 0.06 16 16 N -0.58 -14.28 3.16 -162.69 -0.51 -14.79 16 17 C -0.23 -6.14 10.29 -15.06 -0.15 -6.30 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 20 N -0.92 -26.74 10.55 55.49 0.59 -26.15 16 21 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.18 4.35 5.33 -0.76 0.00 4.34 16 26 C -0.14 -2.84 6.10 -25.43 -0.16 -3.00 16 27 N -0.40 -6.67 9.65 -5.89 -0.06 -6.73 16 28 C 0.07 0.95 6.79 -82.43 -0.56 0.39 16 29 C -0.10 -0.99 9.37 36.00 0.34 -0.65 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.52 6.69 -51.93 -0.35 0.18 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.11 1.70 5.85 -51.93 -0.30 1.40 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.41 8.06 6.92 -40.82 -0.28 7.78 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.05 7.73 -51.93 -0.40 0.65 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.14 7.17 -51.93 -0.37 0.76 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.06 1.73 7.05 -51.93 -0.37 1.36 16 45 H 0.04 0.93 7.98 -51.93 -0.41 0.52 16 46 H 0.08 1.59 6.27 -51.93 -0.33 1.26 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.53 6.70 -51.93 -0.35 0.18 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -31.23 388.38 -9.60 -40.83 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.77 Total: 8.20 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -2.47 Total: 5.27 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -0.25 Total: -66.97 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.06 Total: -9.98 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.23 -9.60 -40.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991749959.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.970 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds